morexGenes - Barley RNA-seq Database

Contig contig_37930
Source Contig contig_37930
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_37930 (5766 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_37930

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_52948	1	965 bp	MLOC_52948.1	Available	Available	LOC_Os12g01360.1, FRAME:-2, EVALUE:1e-12, 13112.m00045 protein expressed protein
CDS Structure of MLOC_52948

Contig Sequence (5766 bp)

>contig_37930 5766 assembly3_WGSMorex_rbca.fasta
GGGGGGGAGCGTGGCGAGGGAGACGGCGAAGCAGAGCTCGAGCGCCTTGAGCTGCACGCG
CGGGGAGTAGGCGGCGCTGCGGGCCCGCGCGAGCGCGTCGCGCAGGAGCGGCGGGGCCTG
CTGCGCCAGCAGCGCGGCGACGAGGTGCAGCGACGTGGTCTGCGCGTGCACCCTGCGGCG
CGCGGAGACGACCGCGGCGTCGAGCGCCGTCACGGCCGCCGGCGACAGGCACTGCCTCGC
CGCGGGCACCGGCGTGGGCATCTCTTCTCTCCGCTGGAGGGACCTGACCTGGCCTGTCTG
CGGTTACTTTTCACCAGGCATGGGGCGGAAATGTAAAACCAACTCCACACAGAGGGGTAA
AACGAACGACACCGGATTTTCCTCTCGGTTTGCTTGCTGGCGGGGATGGAAGGGGAATGG
AAGGGGATAATAATCGGCTGGGAGGGGAGGTGGATTGGATTGCTTGCTTATAAACCACGA
CGATATCTTCTCCCGTCTCCTTTTTATGGATGGCCCCGCCCGCCCATCGGAGTGGGGAAA
TTTGGTAGAGCATATATGCAGCGCCCCTCGCACCACAACCACACTGTGCAGATTGAGATT
CCTCCCCCCTTTTAGCCATGGCTCCGCTCCGCTCCGCTCACTCTGCTCTGTCGTGTACTC
CTCCTTCTCCTGCCTCCCTACCTGCTACTACATGATTGTTCCCTTCTATTTTACCGCACA
GTGTGACGTGAGATCGCGCGTACTACTCCCCTCCAGGCCTAGATACCCAAGGCAATGAGA
TCTACAGTATACTACTAGTAGCATGCATGCACACTGCTGTGGCTCTCTCTTGGTTGCCTG
CTAGTCATCAAGTGCTCAAGCGGCCTTCCAATAATTTTTCCACAACCAATTATTGCCTAC
CGATGCGGTCCAACCGCATGTTTGTAACAGGAATTTCAGCCTCTTCTAATTCTGGAATTC
ACCTTGAGCGGGGAAAAAAACGATTTCCTCTTCTTCTTCTTCTTCTTTGCGTGGCTTGAA
AAACAAACGGCATCTTTAGCTCGATGTAGACGTCTATTCTTCTGTTTATTGTTAGGCTTA
CATCACATTCGTCCGATTTTGTTGTCGACCCGTGTCGTCCAAGACCCGCCGAAAAAGATT
TTATGTGTCTTCAAATTGATGTACTCCTCGTTTTCAGCCACGCATGCGTTCTTCGGTTTT
GATATGTTCCTCATATGAGTGGGCTGAGGAATGTGAATTGTGTGCGTGCGCGCGCGAGAG
AGAGTAGAGATGGATCTGGAGAGAATCCATCATAAATGTAGCATTTGTGTTTGTAGTGGG
CTCTGGCCCTATCTATTAGTGACAAGTGGTGTGTGTGATGATGTTTAGATAACTTACCGA
GAGACTTAGGATCTGATACGGGGTGCTGCGATCCATATCGACGTGGACATAGCTTACACA
AGAAATTAATCAAAGTGATGCTTTATGAAACATTTGTTTACGAAAGATGTAAATTATCAA
TTACACCGGTGAAACTATTTGATGCTCTGTCATGAATTTCAAGTGACATGATTGATCGTA
GGAAAAACATACATACACTAGCACACAAAATGCTATTGATGGTGTGTCAAAAATCATCTT
TGTGGCGTATCGCTTTCATGCCAACGGTATATGGCACACCGATAAAATACACTGATGGCG
TTTGGACCCCCCACGTCATCACTAACAAATATGCTGGTGGCGTGTCACGTGAAGGCATAT
ACTCATGGCATGTGATGACAAGACACACCACCAGTAATATTCATCAATAGTGGCAATGTC
ATGATAGGAACACACCACTAATTTGAATTGTACACATAAAAAATGCACGACAACATTTTA
CTACCCAAATGATAACATTTTTAATTTAACAGCAATAGTAATAGCATATCATATTCAATT
TTGTCATTACTAAATAGAGCCAAGTGATATCATCTAAGTTCAACAAATCACCTAATTGAC
ATAGTATGGCTAGTAGCTAGCATATAACATGTTAAATGAAAGTTCAACGAAATACCAAGA
TATTATGACTGAATAGTTGCTTACTAACTAGATTCTTCGGTGCGACTCAAGGTCGTAGTC
CAGAGAGTCGGAACCAGAGGTGCCAACAAGATTGCAATACATCATGATCTCCTCACACTT
ATGATCGAGGTAGAACGTGGCTCTCTCTCACAAGCTTTCATATTGTAGTCTCGTGCAAGT
GTTATTCAACCAGGGAACCGAGATAGGTTCAGTGGACGAGACAATTGAAATCCTAGCTTT
ACATCAATCCCAACGTCGAACTTCTCTAGGAAGTCACGTCTTGCCTCACAAGGGGTGACC
AGAGCAAAATTAAAAGAAAACAACATGGTGAGACTGAGTCACAACATGCCACTAGCAATC
AGACTACTGATGGCTATGTTTCATCAGACTAGTCCATCACCCTTCGATTGAATTGTTTTG
AACCGTCTGATTGTGCCAGGGAAGCCTGAATGCATCAACATATTCCCAAAACAAAAACTG
CTTCCCACAAATTACGGTAATAACTCTATTTTCTGGGTTTTTTGGTAAGCCGTGATTTGC
TTCGACCAAATAAATATAGAAATTAATTCTTCCCAGAAATTACGTTACATACTCTATTTT
TGTTTTTCGTTTTCTTTTTTGGTAAGTTGTGATTTTTTCCAGCAAACTAATACAAAAATC
AATGCTTAGCAAAAATTAGAGATTTGCTTCCAACACACAAGGTAAAGGAAAATAAATGTT
TCTATAGATGCTTTATATGTAGCGCATGGATGGCATGGAAAGTCCTATATTGTTGATGGA
AGCACCGTGCAATATGCTATGGAAATAAAATATTTGATAGTGTGATTGATTTATCTGTTT
CAGCGAAGCATTATCCAAAGTTGCGCTACAATTTTTTAGATGCTTTGGAGACATTTTTTT
GTGTAACAAAAACTATATTCATGTTCGATGGAAACATTTGCTTGGCAATAAAACTTCTGT
GGATCAATGACATGAATATACACGAATGCAAATTCATTTGATACGAAAACTTTACAAGTC
TTTTTTATAACAACACAAATATTACTTCTACATGGATGCTTCAGTGTATTTTTTGTTTTG
TTTGTGATGCAGTAGAAATATACTTCAAAAAACCAGATAATTTCTTCCATTGTATCACGG
TTCCAAGGATGTTTGTTTCCATGCAGACTTATTTACCATTGAAACACATCATTGGTTTAA
AACGAAGTGAACTATTGCTTCCATAGAAACTAGAATGTGCATCGAAAAAATTTCAGAATG
TGCTTCCATAAAACATAATGTGGCATCTAGGCACAGTTCAAACACCGTCAGCTAGACACA
AACCATGCTTCTTTTCAATGTTAGCCGTGCTTGTTGTGATGGTAATAGTTGCTCCCAATG
TTGGCCATACAACCATGCTTCCTTGCAATGTTGGTCATGCTTCTTTGCGATGGCAATCGT
GCTTCATTACTATGGTGGACGTGTCTTCTTGTGTCACCACATTGTTAATTAGCTGCATCA
AGAAGGTTTGGTATGGATGGAGTGGCGATGCAGCTGCACCATTAGCAAACGACCTTTTGA
CAACAAACTCGGTCAGCTGAATATATCAAATTAAACCAAGGTAAACTAAGGATGTGAGGT
ACCATTTCGTCCAGCCGACCTGACGTGCTCCCATCACTATCAAGAAGGGATGACACTCTA
GGTACAGGAATCAATCTCCTGTCTCTTGGTGATTCCTCAATGTTTGTTCAACATTCCTAC
TAGGATGGGCATCACGTACGGCAACCTGCTCATTAAGCACATAAAAGGATAATAATCAAT
CACAGCATAATCAATCACATCACATAAAAAGATATTGGGAATTGAATCAGGTTATTGTGA
TTTGCACAAAAAATTAACAAAAAATCGTAGATGACATAGAGATCCATTACACATCGGATA
TAACATAGATACACTCAAACAAGTTTCATCGAAGCAAGCATTGCAACCAAACTAACGCAA
ATCAGACAGGAGATCAAATCCGAATCAAAGATGTGATTAATCAACCCTAGTTTGGGTGAG
TACATACCAGCGGGACGAAGCCTGGGACGTTCGCATAGCTTCTTTGCCGAGCCAAAACGG
CGCACCAACGCGGTGGGAGGGATGGTGATGAGGAAAGGTCTGGCGGGGGACCGGGGCGGT
GAAGCAGGCATGGTCGACCGGAGGTGAGAGCAGGGATCGACAGAGAAGATGCAGGCGGGA
CGCTGCACCGATGATATGGAGCAGTTGTAGCCGTCGCGAGATTTTGGCACAAAGATGGCG
GTGGAGGTAGCCGCCGTGGTCACCACGAGCTCATCCATGACCGGCCTGGACGTTGTGAGG
TCGTTGGGATGGGGTAGGGTGCGAGATTTACTCGGTAGATGGATTAAATTGTGGGATTAA
TTGAGGAGATTGGAGATTTGTATAGAATATGGACTGTGGGATTAAAAGTGAATCAACGAC
GCCGGACCGGTGTGACGAAACTTCCGTATCAGACTTCTGATAACAAGTGTTTCCCTAACT
TAAAACATATCGTCCTAGTTAGGAAATCATCTGAAAAATCCATCAGGAACCTCTTGTCCT
TCTTGCATCTGCATTGGCCACACTTGGCGCACACGTGATCCATTTCATGCAATTATGTTG
ACAAATTAAACACACATCGGTCATTGTAAAAAATGATGAACCAAAGCTGCTAGTGAAACA
TGAGTAAAATAGATTTTAAAAGAAACATGAAGAAAATGCATATAGTTAGGTTCATTGCAT
AATTTAAACACTTCAATAAATAAACAATGCCACAATCATTCATAGTTCAAACATAAAATG
CATAAGTCTAAATGTCTAGTACGATCAAATAAATATAACAAGTAATTAAACTAGCTACGA
TGAACTAGTCCTCCCCATCTAGTTGAGATTACGGCCTGTCTTGTACATTATATATACATG
CCTAGTGCACCCAATCAATGCATTGAGAATCGCACAACCCAAACCTAATTCTTTACATTG
TATCACTTTCCTCCACGATCCTAACAAAGTCGTCGTCGCCGCGCCCTCCATCGCATCGCT
GTCGCATCTCGCTGCCACCGCATCCCGCCGTTGCGTGTCGCCGCCGCCTCCCTCCACCGC
TTCCGCCATACTAACCCTAATCTCACGTAGCCGCTGCTGCCTCCCTCCTTCCCCGCAGCC
GCCGTTCCCGCAACCCTCTCCCATGCCACTGCCTTCCCGCCCGCCCCGCTGTCATGGTCT
CTCAGAGTTCCTCGATCTCCTCCGGCAACAACCCGTTCGCAGGCCCGGACATCCCCCTCG
TTCGCGATCTCAACATCTTCGACCGCGTTTTGGTGACCCTTGATCAGTCCATCACATCTT
ACTCTACCTGGAAGAGGTACTTCTCCTTGGTGTTCCGTGAGTACCTGCTCCATGGTCATG
TTGATGGCACCATGGACTCTCGCCTCATGGTGAACGACGAGGGTTGTATGATCCTTTACG
ACACCATCATCCGCTGGTTCTCCTCACCATCTCCAAGGACCTCTTCCACACGGTAATGTG
CGACGAGGACGATGCTTACGTCGTCTGGACCAAGCTCAGTGACCTCTTTGTTGGAAATAT
GCCCTNNNNNNNNNNNTAAAGTAGTTATTATTATATTTTCTTGTNNNNNNNNNNNNNNNN
NNNNNNNNNNTATAATTGTATTAACCGGAAACAATATTACATGTGTGAATATATATAGAT
CATCGT