morexGenes - Barley RNA-seq Database

Contig contig_37847
Source Contig contig_37847
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_37847 (9722 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_37847

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_52847	5	3981 bp	MLOC_52847.1	Available	Available	LOC_Os07g45330.1, FRAME:+1, EVALUE:2e-138, 13107.m04774 protein expressed protein
MLOC_52848	3	1957 bp	None	Available	Available	LOC_Os07g45320.1, FRAME:-2, EVALUE:2e-19, 13107.m04773 protein COX VIIa, putative, expressed
MLOC_52846	5	2318 bp	AK249425.1	Available	Available	None
CDS Structure of MLOC_52847

CDS Structure of MLOC_52848

CDS Structure of MLOC_52846

Contig Sequence (9722 bp)

>contig_37847 9722 assembly3_WGSMorex_rbca.fasta
TCCCAAACAAGGTGGGGTAGGCTAGATGTGAAACCCATAAGATCTCGCGACCAACTCATG
GATAGCAAGCTTCCACACACCCCTGCCCATGCCTAGTTCTTTGGTGATACTCCAATCCTT
CAAATCTCTCTTTTTGTAATATAAACACAATTTTTTTTGCCAGAAGTACTATAGCTTACT
CGTGCTATCATAAGTTTATTAGATAAGTTCAAATTAGCAATTTTCACAATTCAACAAAAT
TAAATTGATTTCCTAATTTTTTTGGGAATGCACCACAATGAAGACAACTGAAATTAGCAA
GTACTATCAGCTAGCAGCATGGGAACTACTAACTAATGGTCAAAGTACAGCATTTACTTC
ATATATGGTCAAGAGTTAGACCTTTCCTATCAGCATGCTTTACATGTGATATACTTTCTA
TGGAAATTATCATTTGGTATGCTTGGTTAAATGGGTAAAAAGGAGGATATGTTTTAACAT
TTCTTCTCTCTCTTCAACAGCTGCTATCTTGGACACTGCAAGTAAAGTCCTGCCACTTGT
AGTGGCAGTTTCTGGGCGAGTTAGTTCAGATACGCCACTTATATGCCAACAAAGTGGTAT
GAGAGGTGTGATAGTCGAGGAAACGGTAGCTACTGATTCTTTGTTTTCGTTATTAGTTGA
TGGGCTTGTTGTTAGTAATTGTGGCACTGTGCTAACTTTTTGTTCTTTGTAGGCAGAGCA
ACACTTCCTGAAGCACAATGATGCTGGATCCTGGATTCAAGATTCTGCTGTGATGCTTTC
TGTTAGCAAAGAGGTTCCATGGTACCTGGTAATGTGTTTCTAGTTCTCTTTTTGTTGCTC
TGTCAATACATGTAGTTTAATTTAGCCTTAGTTTGATTATTGCTATTATGTATCCAAACA
TGGAATTATCTAGAAGTTTATTTCTGCAAGGCTTGGGTCCCTCTGTTTGTACTTCTGGAG
TCCAGACTACCTTCTCTGTTTGTATACCAGATTTATATGAAAGAGGAGCATATGCATCCC
TAGCTGCTAAGATAGTGCTATAGGTGAGAAAATGTGTTAGAATTAATGGCCAGCATTGTG
CGCATGGTTGCTAACTCAAGTATATATGGCACAAAGCTAAGCTTGCTGATGATGTTAAAT
CATCTATTGTTCATGGAGGATACGAAACAGTAAAATATTTGGTATCAATTAGCACCTATA
TGTGGTGCTATGTGCTATGGATAGCTTATGGCGACAGTAGTTAATGTATTGATGATATAC
CTATACTTGTTTAACAAAAACAATATGCATAAGCTTAAGCCAGGTGAAGTTGTTATATGA
ACATAAATGAAGTGACTGCTCGTAAAAGAAAAGATAAGTTGTAATTTTAAATTCACTATT
TGTTAATTTAACTTGAAATATCTTATGATTTTGTAATGCCTTGCAAGTTCAGTTCTTTTC
TAACACCTAATTCATCACCAGGATGATGGCACTGGGCGTGTCTACGTTGTTGGCGCTCGT
TCTGCTGCCGGGCTAATTTTAACTGTTGCCAGTGAGGTTTTTGAGGAGTCGGGGCGAACC
CTTGTACGTGGAACTCTAGATTATTTACAAGGATTGAAGGTTTGTCTAATCACATTTTGA
GCAAGACCAGTGCTTATAGGATTGCTATTCATAATTTAGCATTAATCTTTGTAGATGCTC
GGAGTAAAGCGAACTGAAAGGGTTCTTCCAACTGGAACTTCATTAACTGTTGTTGGTGAG
GTAATACCTGTAGATTTCATTGGGTTTCAAGGCACTGCGAATTTTTGTTGACACGGCTAA
AATTTGTAATCCCTTACTTTTGTTCTGCATTCTTATGTTATATGACCAGGCCATTAAAGA
TGATGTTGGAACTATTCGGATACAGCGACCACACAAAGGACCATTTTATGCATCTCCAAA
AAGCATCGATCAACTTATCTTGAATCTCGGAAAATGGGCCAAGTAGGGAGATTATGTACT
AGAACATTCTAACTCTTTGTTAAGGGACCTTGCTGATAATGGTGTGTCTTTTTACAACAG
GTTATACCAACTTGCCTCCATGGGCTTTGCAGCTTTTGGTGTCTTTCTTCTTGCTAAGCG
TGCACTTGATCATTTTCTACAAAGAAAGCGCCAGCGTGAATTTCACAAGAAGTATGGACA
AACAATAGGTTCTTTTATTTAGAATAACAAAGGGGGCATGTTCTTTGGAAAGCAATTTCG
GTCTTTTTGTTTTCAATTGTTCAGGAGGGTCGTTCATCTGTGTTTGCCATCATCAGAATT
ATGTCCCTTTTTAAATCTTGATCACTGAGTAGTATGTTAATCTCCCTATGCTTTTTCAAT
TGCAAAAACTGCATTGTCAACCTGCAGCTAATATATTTATCTAAAGGTCACATGCAGTTA
AAAAAAAAGGTGCACTGAAGACACTGTATGTGTAATGTTTTACTCGTGGAACTATTTTTT
GTTTTCAATCAGTACCACAAATTAGCAATCATGCATGGGGCTGACTACCAATATACTTTA
GCAAGCACCAAACATTTTCTTAGTTTGGAGTTTCGGAACATTGGTGTTACGTAAACTTAT
GTATTCATTTTGTCCATACAGGGCTCGTGCTGCTGCAGCACAAAGGCAGGCTAGGGAAGC
TGAAGGTGATTTTCTTATAGAGTAATTAGGCTGTCTTGTGAGTACTAGTTCCTGTCTTTT
GATATATTTAACTACTATATGAAGGGGGCAATGGTACATCAGACGGAGAGCCTAAGAAGG
ATCAAATGGTATTGGAAATATGTGTCATATGCCTTGAACAGGAGTATAATGCAGTTTTTG
TGCCGTAAGTACCTTATTTTACACTCCACATTTCATCATACTACCTCTGTTTCTAAACGT
AAGGCGTTTTGGCAGTTCAAATTTTGAACTGCCAAAACATATTACATTTAGGAACAGAGG
ATGTATAATTTTATGTTAATAATGAAGCTGTTTTTTTTTACATCTTCATTGTGGATAATC
CTGAGCATATGTAGTAAACATTTGTACTGTTTACTGTTTCATTTGGTCGAGAACTGAGCC
TGAGCCACTTGGCGAGGTACCTTGTGGGCACGAGTGCAGCCTTCTATCTGTGTTTATTTG
CCCCTGACATCGTTGACTTTATTTACATTTTTAGCTCTGCTTATTATGAAGATGTTTACC
ACCTGAATTATATTATCAACACCAATGCTCGTTGATAAGCACATCTTTCCCTGCTACCTC
TGCACTTTTATATTGTCCCCACCAAAATTTTCAATCATACATTACAGGTGTGGCCACATG
TGTTGCTGTATGAACTGCTCTTCTCACGTTACAAACTGTCCACTTTGCCGACGAAGAATC
GACCAAGCTGTCAGAACATTCCGTCACTGATGGCGGCACTATATGATGCAAAATCATGCG
CTTGATCATGCCAGGTGAACCAACATCTTTCAAAACCACCTGATACTAAAAGTTCCGGTC
ATCGCCGTGGCTGCCAGTGTGCCGATATCTGGAATGCAGAACTGAGCTGAAGCTTGTCAT
GGGAGTTTGTTTTACAGACGGAACTTGAAGCGATGCAAAGTCATGCTTCTTCAACAGTTA
CTGATCTTGCTTGTACTTTTACAGTTGTGTACAGAGTGTTCTTGTGTAACTCCTTGTTTC
TAACAGCACTTACGGATGCTAGTGGTGGGTCAATTGATTCTACCCAAAGGAAATGCTTTG
TTGTTTGACACTGTAAAGGATAATCACATCTTCTGATATATCGGGCACCCTCTATTGATG
TTCTTGTGTGCTCTGTGCTCCGTTGATTTTGTCACATTCGAAGGTGGGACAAAGCTATAA
ACCAGACCATAAGGGCTCCTTTGATTAAGATTATTTTGGTATGAATTTTTGAGGATTAAA
ATCCTTGGGAATTATTCTTAAGGATTCCTTTGTACCATATTCCAGGAATTTCAGCATTTA
CTCAAATCTCTTTGATAGAATCCTTTGTTTTTCCTATGATGTAATCAAACAAACCAAAAT
CATTTAGGATCGAGATGTACATTACATTTCAATCCAATGTTTTTCTATTTATGTGTTTTT
TAGAATCTTGCGGATGAAAGGAAGTTTTTTTTTAAAAGGATCCCGATAACACCCAAATGT
TTGTTTTTTTAATCATGGCAAATCAAATGTTTTTAAGATAATTTTAGTGACTATAGCAAG
TTTAGTTGACACGCATGGCAAATCTGTCAGTGTATTTTTCAGCAGGAAATTGCCATCATG
TCAACTAAACCTGGCTTCCTCGCATCACTAAAATTACCATAAAAACCGTTGGATTTGCCA
TGGACAAATCCCCAAACTTTTGTCTTGCAAATGAGATGAAAAAGGATCTAGTTTATTTCC
AGAGCGGTAGGTTATGAAAGAGATACAGCGAAACACATCTCAGGAACTGCAAAACTGAGC
TTAAATCGAGGAGATGGGAAACAAATTCGAAAGAGTTGGGTATGGTTTACACTTTTAGTG
GTTTGGTGTATCAGGGATTGGGATTACCACTCCCAAACCAACCTTGGGCAGGTGGAAAGA
CCCGAGGAACCGCAATCCAAAGCGCATACCCTCGCACTGCACGTGGTGACGTGGTGGATC
AGCTACTCCCAGTCCCAGCCGCCGCTGCGCATCCGTTCCGTCCGTAACCCTAGACCGGTA
ATCCTCCCCTCCCCACCCTCGCCGCGGCCCCGGATTCCCAATCCCAATCCCATCTCCATC
TCCATCTCCCCCGGCAGCCGTCTCCCCTCGCCACCGTCTTCCTTCCTCGAGAGCGGGATG
GACCAGGCCAAGGTGGTGCGGGGCAGAGGGAGGAACAAGAGGAAGTGGACGGTGGACGAG
GACGAGGAGCTGGTGAGGGCCCTCCGCGAGGTGTCCGCCGACCCCAGGTTCAGGGCCGAC
GGTGGGGCCTTCAAGAACTGCTACACGCAGGGGATAGAGGCCCTCCTCGCGCGGCGGCTG
CCCGGCCGCGCCATCAGGGCCAGCCCCCACGTCGACTCCCGGCTCAAGGTCCTCAAGCGC
AAGTTCTGCGCCCTCAAGGACATGCTCGCCTCGCCGGGCTTCTCCTGGGACGCCTCCAGG
AATGTCCTCCGCTGCGACAAGCACCGCTACGACGACTACTGCAAAGTCAGCCGCCATGTT
TTAGCTAGTGTTGTTGGCAAATGTGTCTTTCTTGATGATGTACTACCATGAATGGACGTT
GGCTTGTTTGGTCTCTGCAGGATAATCCTAGGGCAAGGGGGATGTACGGCGTTCCGTTTC
CGCATTTCGACGCGTTCGACGCGGTGTATGGCAAGGATAGAGCGGCCAGGGAGGCGGTGG
AAGTGTCTGAGGAAGCGGCCGCCGGCATGGAGAATGGGGATATGAGCGAAGATGGAGGTG
ATGAAGAGGAGGAAGACGGTGCGTGCACCGGACCGTCTGGTTCTTGCTCCTTGGATGCTA
CATTGAGCTATAAAACAACGCAGGAGAGATGTAGGAACGGCGGTAAAAGGAAGAGGGCTG
AATCGGATCACCTGCCTCCGGACATGCTGAAGGATGTTCGTGGTCACTATCAACGCGCCA
GCCAGCACGTCGACACGATGGCGGAGGCGATGGAGCTGTTCAAGGATGTGCACAGTCACT
TCCAGAGCGTTGTTCAGCATGCCGGTGCCATGGCAGCGGCAATGGAGGCGTTCAAGGATG
CACACGGTCGGTTTCAGAGTGTTGTTCAGGATGCGAGCACGGCCGCAACAGCCATGGAAC
AGTTCAAGGATGCACATGATCAGTTTCGAAGCATCACCCAGAATGGCAGCGCAACTGAAG
CAGTTATTGAGCCTCATACTGATCTGCAAGAAAGGTCATCGCCTGAGGTGCCCCAACAGG
ATGTCAGAGTAAGAGCCATTGCTGAAATGCAAAAGCTTGGGTTTACAGGAAGCGAAGTGG
TCAACGCCGCGAGTGTTTTCGCCAAGGAACCGGACCAAATGGGCATGTTCTTGGCACTCC
CAGAAATCTACAGGAGGGAGTACATACTCAAGATGCTTAATGGTATGTTGACTGATCCTC
AAATCCTATATGAACGCGTCGTGCTTCATTGCAAGAATAGTTTCAGGCTTTCTTATTCTG
AATGTCCATTGGCATTTTGGATACAACAAGGTAGAACCTGTAGGCTGTAGCCTACATTCC
TATCAATTAGATAATTAGTATGTCGATTTTGGAGATAGATGAGCTATTAGCTTTTGTTCT
AGACTTGCATATGTATCCATGTTTCTCTATGAACATGGCATTGTACTCCCTCCGTTTCAG
TGTGGTTTTAGTTCAAATCAAAACCATGACATAATTTTGGGACGGAAGGAGTAGTAGTTT
CTACTATGAGGTTATCTTATGCTATATCAGCAAGAACACACTCTGTCTTGCATGTTGTTT
AGTGTAGATTGCAACGCTGCCCGCTTGCACGGACTAAAAGGCCTTCTGATAACTCTGTGT
GCTTGTCTAGAAGGGGTTAAATGGCATGTATCAGTTTGTCAAGACTCTCATTCTGTGCGT
AGAGTTTTTCCTGGGTTGTTTCTATTTTGAGAATTTTCTGCCAATCTTCTTCTTGTTCAA
ATGGCCTGAAATGTTATGCTTTGTCCAGTGAAGCTGATTCATGTCTCATCCCCTTCTTCA
GGCGGGCAATCTCTCCATTTTTAGCTTCAAGCGACATGGGAGGAATGAAGCTCTAGAAGT
TCTAATTCAGTCCCCTTCTTAAGGTGGGCAATCTCTCCATTTTTAGCTTAAAGCGACATG
GGAGGAGTGAAGCTCTAGAAGTTCTGATTCAGTCTAGTTGCAGCAATGGTAGTTGAGAAT
TTGGGAGTAGTACATGTGTAAATGGTTATATACCTAGCGTCCCTTGAAGTGTTCTAATGC
ACTGTGTTAACGATGCTATCATGTTACTGATTAGCCTTGGCATCCCTTTCCTTGCGCCAG
GCTCGGTGGAAGATGGTACTACCTAAGGGTAATTGGCATTCCAAACGACTCTGGCGTTAC
ATTCTGATTCCCAGGGCAAAACAACAGCAACCTAAAATTGCAGAAATGAAATGGCTTATG
ATGGAGCTCAAGGAAACTACTCTCTTTCTAAAAAGAACTCGATGTATAATCCCAATATAT
AATCCAGCTAGATAACAACAAAGCCAAACAATATATAATCCCGATGGACTCATATTAGCC
AGTATATTCAGGACCTCAAACCACGTAGGAACTTGCTGCGTACCATACAAACAAACTCAT
GAATTCACAGACAAGAAATCATGTCATGAATGCACAAACAAAACATCAGTTGAAAGGAAA
CGTAGAACATAAACAACACAATTAACAGAAAGGATAATGATGCCAATGTTATAGAATCAT
CATTGCCAGTTTAGCATCAATTTGCTGACATCAAATATCCACAAATACCAACAAAAGAGA
ACTGGAAATGAACTCAGTCTTTCTCTGACAATATTATTTGCAAACGAAGATGGCATCATA
GCTTGGGCAGTATCGCTTCCATGCCGCTTCCTGAGATACTAGCAAAACCGACAGAAATTC
ACTCCTTTTTCCCGATCCCGTTAGACATGTTGTAGATCCCACGACCCTGATTGTTAATCA
AGAAGACATGTCAATGACTGAGCAGAAGCAATATCAAAGAGCACAAGCAACCAATGGCAT
CAGATGGGATTTTGAACTTACAATCATGAACAAGCTGGAGCCAGCAAGCGCAAGGGGAAT
GGCAACGGAGATGACCGCATCGTAACGGCCTTTAAGGTGGATATGCTTGCTCAAGTTCTG
GAAATACTGCTGCTTCTGAACAAGCTTCTCACGTGGGTAAAATGGTGCCTCTTCGTGCGC
CATCCTGCATACAAAATCTACTCTTTCATTCCTAACCCTTAAATGGAAGAGCAATTGCCA
TGGACAGTCCTAGCATAATCATTACATCATGGGAGTAACTGCTAAGATTCAGCAAAATTG
ACCAGAACTCATGAAACTGATATAATCCCTATGCGGATTTCTAACAGTTACTCGGCTACT
CTCCACAAGCAACTATCGAAATGGGGAACAAGTGCCTAATGTACAATCCACTACGTTACT
TCATCTCCCAGGCACTTTATTCCAAGGATTCTTCTTTCTGAGCAACTCAGCATATTTGAA
TTTAGCACATTAACAAAACATTTCAATGATCAGCAAATTCAGGTATCTTATACTCCCTCC
GTCCCAAAATTCTTGTCTTAAATTTGTCTAGATATAAATGTATNNNNNNNNNNNNNNNNN
NNTAGATACATTCATTTCTAGACAAACCTAAGACAAGAATTTTGGGACCGACGGAGTATC
TTCTACCAGTAACACAGAACTTTCTAGGCTATCATTGATCATGACCAGAACCTCCCTCGT
ACCATCGAATCATCAGGAACCCAATGAATTTATGTGCGTTCACGACGTTACAGCAGATCT
AATAATACACCAATGAGATTTCGATGAGCTCGCACAGCATTACTAACCTAGCAAACAACA
TAATTCCCCCAACGAAAAGGCATCTCAACCGGATAACCCAGTCTCAAACTAGGTTAAACA
AACAGCAGTAGGCCACATCGGACCGAGACCAAGGCCCGAGGAGACAAATATGTTACCCGT
CCTAAAGCGCAAGAGCATACGCATCGAAATGTCCGCCACGCGACGAAAATCTCCCAGACC
AGCGCATCGAGAGGGCTACCGGCGAGTCGCGGACCGACGGCTAGATCCACCACGCGCACG
CACGCAGGGGTCCACGAAACCGCACGGACGCACACGACGGCTCGCTCGCTCGCCTCGCGT
CGCATCGAGCGAGGAGGAAGGGGGTCTGTCGCCCCCTTCGTGCGGGATTACGAGAGATCG
TGCGCAGGTCGGGGTAGGGGGGAGGGAGGGAGATCGCCGCGTACCTGGCTGGCTGGGGCG
CGCAGGGGCCGGGAAGCGACGGGGTTGCCGGCGGCGGCGGGTGGATCTGGAGGCTGGGGA
TTTGGGGGTAGCGTCGTGACCTGGAAGGGACGAGGAAGGGAAGGGAAGAAGAGGGGGACG
AGAGGGTGAGGGGGGTTGTTGGGTCAGCTGGGCCTCTTCGTCAGCCCGTCAAAGGCCTGA
GAATTTATGGTGGGTTGTAAGGAATGGAGGGATTTCTTTTGCCTTTTAAAGAATGGAGGG
AGTTTTCTTTAAAATAAAGAATGCAGGGAGTTTTTACCTTTTTTGCTTTCTTTTCTTTCT
TTTTTCAAGAGAAAGATATTTCATTGCTTAACCTTGGGGATTACAATCGTTTTGGTACAG
CAATTCAATCTCACAACGACCAAACGTCAACCACAAATCAATGACACACTATATCAATGG
TGTATTACCTTCGTCTGGGATTTTTTGGTCCTGTGAGCTCCTGAGCCGTGTTCATAAATA
TTATCCCGTGGTGTATTTTCCAAGGCACAATCAATAACGCATGTGTCTGTTTGATTGGTC
GCAACATGCATGAGGACGGGGGAGAAGAGTATTTTTAACTCGCCGATGATGGAGGCATTC
AGGTATCGATGTGTTTCTAGATTCTTAATCATACTAGGAGGCACCTCGAAGCACCTTTGG
GATACCATAGACCAAAGTTTGGATATGAGCCAAATATCGAAAGATTCGCTTGATAGCCAC
ATAGTGACTTTCCTTAGGTGCGTATTGAAATCGTGCACAAATTCCCACGCTCAACATAAT
AT