morexGenes - Barley RNA-seq Database

Contig contig_37766
Source Contig contig_37766
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_37766 (7074 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_37766

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_52752	6	1735 bp	AK373691	Available	Available	None
MLOC_52751	1	898 bp	MLOC_52751.1	Available	Available	LOC_Os01g56235.1, FRAME:+3, EVALUE:6e-115, 13101.m05947 protein expressed protein
CDS Structure of MLOC_52752

CDS Structure of MLOC_52751

Contig Sequence (7074 bp)

>contig_37766 7074 assembly3_WGSMorex_rbca.fasta
GGCCGCGCGCGCCTCCCGCCTCGAGCACGAGGCCGCGCGCCTCCGCCAGAAGCTGGCCGA
CAAGGACCGCCTCGCCGCCGAGCTCGCCGACAGGGCCGACGCGCTCGACCAGGCCCTCCG
CGACGCCGACGCCCGCCTCCGCACCGTTCTCCAAGACAACGTACGTAAACCTCGGTCGCC
TCGCCGCTAATTCGGTTTCGCTGGTGCTGAGGTTTTTTGTCCTTGCTCTTGTTGTTGCCT
GCCGCCAAGGCTAAGCTGGTGAAGGAGAGGGACTCGCTCGTCCAGACGTCCAGGAAGCTG
GCCAGGGACCTCGCCAAGGTGACGCCATCTGTGATCTGCGGTCGCACGGCTCTTCTCCTC
GCAGCATTCATTAGTAACTTTTCTGGTGGCTTTCCACTTGCAGCTGGAGACATTCAAGAG
GCACCTGATGCAGTCACTAGGCGATGATAATTCTTCAGTAAGCTCCTCTCTCTGATCCTC
TGTATGCATAATGCATTGCTAATACGAGTATTACTCATGAATCATCACGTGTCTCGTGCT
CTGCAGAGCCAGGAAACAGTGGACATCAGAACCTGCGAGCAATCGGTCGCCAAAGCAAGT
TCCTGGAGAGGTATATATACATATACATGATCGCTGCCCTTCCTCTTGGACAATTTTCAT
CCCTAGCTAGCAGCTCATTGTGTTTCATTCCATCTGTGCTAATAATTCTTCTGGCGGCAT
CCCCGAAGACGCATCGGCGAGCAATAATCCTGCTGCTCCTGCATCATCCACCACCCGAGC
CGCCGACGGATCATCCGAAGCCGAAAGCGTAAACCAGGAAGGTATGCAACGATCAACAAC
ATTTCTACTAATATACGTACCTATCTGTAGCACAACGACAGAGTTCTCAACAGCCCTACG
GTGCTTCTTTCCCGTGCACGTTGACAGTGGCAAGGCCGTTCGAGCAGAAACTCACCATCA
CGCACATGACTCCGCGCCTCATCGCCGACCCTGCGCCGAAGCAGAGGTCCTCCTCCGCCG
CCTCCGCCAGGAGATACTCCACTGCCGTGTCCCCGAAGCTGACGTCCCGCGCCTCCTCCC
CTAGACGGTACTCCACGGCCGTGTCGCCGAAGCTGTCCTCCGGCAGCAGCGGCGCCGGCA
CCGCCACTTCCCCGCGGCTCGAAGGCCACATGGCCATGTCGGCGTGGCTCCCGTCGAGCA
AGATGTCCTCTGCGGCCAACTCGCCCCCTCGTGGGCACTCAGTCTCAGGTAGAGGTAGAA
CGAAGGTTCTCGATCCCATCTTTGTTCCACACAAGAGTTCGTCGGCATTCATGTGGAGAT
TGTTCTTCATTTTCTGCGCGCTCTGTTTTTTTTTTTTTCAGGGCGCACGACGAGGATAGA
TGGCAAGGAGTTCTTCCGTCAAGCAAGGTACCACTCGCTACCTCTCGTTTTGTTTTGACA
GAAAAAACATGGCATGGCATCAACTTATTTGATATTTCCCTCCTTGTTTTCTTCATCCTC
AGGAGCCGTCTGTCCTACGAACAGTTTGCTGCTTTCCTCGCCAACATCAAGGAGCTCAAC
GCTCACCGGCAATCCCAAGAGGTAACTGGGAACGCTTTCCAGCTCGATCCGTGGTTTCTT
TCGGATTCAGATCTTGAGGTATAGTACAATATTGCTGTGGTGTTGGTGCAGGAGACGCTC
GACAAGGCGGACCAGATCTTCGGCGCAGAGAACAAGGACCTCTTCGTCTCGTTTCAGGGC
CTGCTTAGCCGTAGCCTCACGTAACACACACAAACACACACCTGTTGCCGCAATTTATAC
CACAGCAGAGTATTATTATGTGCACTTTATCACAAAAGAAAAGAATAATCACCATTTCAA
TATCACACGAAGAACTGCTCCTGTCAGATATAGATTATAGACCCTGGAGCAGGTTGTGTT
TTACGCTCCTTATTGTAATCGAGGCGATTTTGCGCGATAAATAGAAAACAGATCAAAGGG
GGTAACACATGGTAGTGATCACAAACGGTGAGCTACAGAGCTGCACACCAAGATTGAACA
GGGTTTACTTGCAATGGTAAGATAATGAGCCACTACAGTTAAGATTCAGAAAGTCGAGAA
CGAATACCGGCTTCACATTCAGAGTCGTAAGTCGCAACTGAAAACGGATGCTAGGTTTCA
ACCTTTCAAAGGTCAGTTTGATGACCAACGACTATCTCAATGTCAGTGGTCGAGGCTTAG
AAGCATTCAATGCACAAGCAGTTTGAAGCTTCCTAAGCAATATCCAGACGGGTATATATG
TACAAGACGGAGAATATCCGTGGAAAATGTGAGGCCGTGCTCAAGCATACTTCTGGATCA
TGTACATGGGGTTTTAGCTTGTGCTGCGAGTCGCACTATCTAGCTTTACTTGGGAGTATA
TGTAGTTTTATGTGACTGTATGGCAGGGTGATGGTTTGTGTAGATGGGCGGACACGAGTT
TGCATCTGCTGCTATTCTTCTCCTCTTCACTCCCTCTTGGCTAGCGTCTTTTTAAGGCCT
CTCAAGATCTTTGCAAACCATATCGTATTCATGATGAGTAGTATCGAGGGCACGCCAAAT
ATCAGAAGGCAGCTGAAGAACCGCATCTGCATCACCTGTCAATAGTTCAGATCAAATTTA
GTTTCAGAACCATCGATGTGATAGTTGTCCCATAGTTATGTGCTGGCACCCAAGTACTAG
GAATTACGTCATCATAGTGGAAGTAGATATGGTAGAACAAGTAGATGAAGAGAATTATCC
GTGCCACCTGTATTACACAAATAGTTGACTACGTTAGAGAGAAAATTGCAGAGACTTCAC
AAGCAGAATAAAGGCTTGCTGAGTTAGCCAACAGGTCGATTACAGAGAGCCAAAGCAAGA
CCAAAGTACAGCAAGCTAAAAGAAAAGATGGAAGCAGAAACAGAAACAGGAACGCACCAA
GGGCTTAGCAAGAAACAAAAACTGAGACAAAGCCAAAGAATCCAGGGAAAACCTAGTATG
GTTAAACTAAAACTACAGCAAGGCCTCGGCACAGAAACATCTGGGGGTATGATAGCATTA
ATATTTCAACTTGTGCGTTAAGTTTCTCTAGAATCACAAGACTAATTGCTAATACTGTAT
CCCAGTCCCCAAGACGAGTTAGCAAATGTCCAATGTGAATTATAAAGAACACAAACAAAA
TAAAAGACCCTGTCTATTATAAAGGTTGAGATATTCCACTAGCTGCAATTTTAAAAAGGG
CATAGTGGAATAGAGTGTATAAAGGAGTAGAAAAACCTTAGCTTGAAGCATATTCACATA
ACAAAATATATGTTTTTGATCGGGCTGTACAATTTGAAATGCTCATTCATGTATGCACAC
ATTGAAGCATACTGAAGAGTGAAGACCAATTAACTTTTGATCAGTTGCCTGAAATAAAGT
GAATCCTATAACACTACTTTGTAGAAACTTCCACTTACCAGCCATGCAGCAACCATTAAG
GTACCATTTACGATATAGGCCTTGGATCTTTTCAGTCCAGCAGTATCAAGATACCTTCGT
AACAGAAGGTAACAGGAAAGGTCAGGTCGAATGAAATAACAATAATGACCGAGAAATATT
GTGCATTCATTGAATCAAAATAAATACCAGCGGAGGTTGATTCCAGGTGTGGTTCCTTCA
GAGATGAGAACCATGTATGTATACAGCTGGCCTTCCCCAGAATACACAGAATAGACTATG
GAAACAAGTGACAGGAAATGATGAAGAACCTGCCAATGGTCAACAAATAGTGAATAATAC
ATAACAAAATGCAGCAATGATAATTGAACAAAAACAATGAAAATTAACACGTGGATCAAA
GATGCAACCCAGAGATATCATATAAGGGCACTTACATACTCCATTCCGCCTAGGGAAGGA
TAAACCCAAAATATCATAGCAATGTCAGTGATGAAGTACCCAACAGAAACCTGGACAAAT
TGAAATTATGCCGATATGAGGCAAATATAAAATTCATGATAACATAGGAATTTCTTGAAT
GGGAACAAAATAGTACTTTACCGCTAGTGTAATATCAGAGAGCTTTGAACTCCGGAAAGT
TACTGGTCCATCCAGCTTATCAGAGAATAGGTCGGAGAAGAATACTAGGTACACTGACAT
GAATGTGATGAAAATTGCATGGACAGTGGAGATGCCCCTAGAATACGTGAAAGGTTGGTC
GTGAGTTGATATGTCAATAAGCACAGCGTGAAATTGGACATAAATTTTGCAAGCAGATGG
CTTCACCTGTTGTTCCACTCAAGCTTTTGGGCTTTTGTAAGAGAAGCATAACACTTGTAG
AAGAATGAGCTGACTAAGTGTGTGATGTCATAGACCTGCAAACCAAAAGGAAATTTGTAG
CCAAGAAAGGTATAGACTACAGAGTTCTGGTACACACAGGTCAATCATAACTTGTTCCAT
GCAAGAATTTCAGGGTTAACATAAATGTATGTACATTAAAACAAGAGAAAATCATAGGTG
GTTGTATGGGTGAGTGAGTGCAAAGGTTTTTGAAAAGTCAAACACTGAAAATAATGCTAG
AATTGATGATTATCATGTGCATGCTGCCATATGTGTCACATCGCAGAATAGTTAATAACT
TGCTACGTATACATACCACTATTGCCTAAAGATTACAGATGGTACATAAGGTATGGTAAG
GGATCCTGGGCTCCTGGCGTACACAGACACACACACACAAAGGGCAAAAAAAGGAAATTG
CTGCGGTGTTAAACATATATGGTAATATACTGAAGCCAACATGTATAATACAGATTAAAA
ACATACATACATTGTGATGCAACTTCTATTTCCCATCGCAGACAAATATTGATTAAGAAA
ATGGCTAATATATTGATAGGATTAGGTTAAAAAAAATGTGACGTAGGATTAGGTTATTTT
TGCTGGCTAAACGGTAACATACTTGGTTTTGAAAATCTTGTATTGAGTATCACGAATTTT
ACTTAAGAACTTAACTGCTCATAGTAAAACAAAACCATTACGAACAAACAGTTGAATCTC
TTTCATGACTGTAATTTGAAAATTCATCACAGCTTGCATGTGAGTTTAAAACTTACATAG
CTTCAACTGATTTCAGATGCAACCACGGCTTAGGATCAGATGTGGTGGGTAGCCATCAAC
ATATTCATAATTAGATGTCAAGCTAAACTGAGAATTTGCATATCCTACATTAGATATTAC
AGGAACCTGCTTATATTAACATTCATATAGTACAAATGGTTGTTCAGTAGTCCACAATTT
TCACACAGTGAAGTTAAGCAAAAATGCAATAATACTAGCATCTATTTATTTCTTCCATCT
AAATACATGAATCATGTGAGCATCACTAAATTCACAGGTGACATGATCATAAATGTCAAC
AGATAAGAGGGTGAATAATACCATCTTGCACATCAGGATCCCACCAAGCATAGCAGTGTA
CGAAACATATGAATCTGCAAGAAGATACTCCTTAACCAGTAACTCTGCTTTGTACGAGTA
GGCCTTGGCCGCCATAACAGAGGTTGTGGACAGATCCATCAATTCCTATATCTTGACTCA
GCAGCCTGATGAAAGAGATAAGTCACATAACAAGTTACTTTTTGAGCCATAGAGAAGCCA
GAATTGTGAAATGACCACACTAAAATTAACAATAGTTTTTATGACATCCAGTTGACCATA
GAAGAACAACCAAGATATGAGTCATTGCGACACAGCGCTCAGAATAATCTTGCATGAAGT
ACAACACCCAACTGCCACTTAAATGCATAATCGTGAACTACACGAATCCGATCACCTAAA
GAAGCTATTCATGCCATAAAATACGACACAGAAGCCAAATAAAGAATCAATCCCTATCAT
GTGTCCCTTTCATAGTACTTATAAAACAGCAAACAGAAGCATGCACCGAAGATTTTGAGT
GTATACTCTATACTGAAAGAGTAGAAGCTGTGAATAATTCAACAACGTAGTGCCGAAGCC
AAGGAGTGGATCCTACTAATAACAATTGCTAGAGCCACAGTTCAGTTTAAGTAAGATAGT
CATTGAGGTCCCCATCATCATGGAGCCAGATATGAATCCAAAACGGCAGCAGCTAATTGC
ATGCTTTGATGGCAAATCATCAAACCCCTGATAAAATGTGGTAAAAGATCAAAATCCCCG
ACTGCCATCCCTCTAAACACTAAAAATCAGGTAGGGCAACATGGATTATATTGGAGAATG
TATCAAATGCAAAACAACTCAGAACAGCGCGTGGCACCTCTAATTACGCGCAACAACTTG
CAGGAAAATAGAAAACGATAAGTAACACGTACTAGCTATCAAAATGTGCTGAAGAAGATA
CGTACATAAACCTGACTAAATAAGGCAAGGCACAAAGCCCACGAAGGAATCAAGAAGAAT
ACAGGGGATGGGGGGTCAGGAAAGGTGCGCGACAGGGGCAACCTTTTGTGCCATCATTCA
AACCGCCAGCTCGAAAGAGAAAAAAAAAACACCCGCACGTTGCGACCAATTGGGGCACGG
AATCGATGCCCGGGCGACAATGGCACGCGCCGTCGGCCGGAAGAAACCACCACAGCGATC
AAAGGGAAACGGCCGCGAGTCCCGGACGGCACGCCGCCGCGCGCGACCGATAAACCGAAA
CCGTCGACCCAAAAATCCGAGGAAACGGCGAGAGGGAGAGAGAGAGAGAGAAGGAAAAAT
GGAAAAAAAAAAACACGAGGCGAAACCTCCCGCCGCCGCATTGCGCACGGGCGACGGGGG
CACGCGATCGATGGCCGAAGCTCCGTCGTCGGAGCCATCAAGCCCACCGAATAGCAGAGG
GCGTACAGTACACCATCTACGCGACCACGGCCGACCCTCGCCGAATCCCGGACGTGGCAT
CCCGAAGCAGGGGCCGGGACGAAAGCGAGACGCACCTCGGAACCACGTCGCCCTCCGCGA
TTTTTGCGAAGGGACACGATGGATCGACGGGGCAAATCGACAAGCGGCCGGCGGGGCGGG
GCGCGGACCACATCGTCTAATGCTTGCTCTACCAAGTTACTATGACTACACCTA