morexGenes - Barley RNA-seq Database

Contig contig_37730
Source Contig contig_37730
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_37730 (9513 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_37730

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_52707	1	1152 bp	MLOC_52707.1	Available	Available	LOC_Os09g35690.1, FRAME:+1, EVALUE:7e-103, 13109.m03494 protein zinc RING finger protein, putative, expressed
MLOC_52708	2	1711 bp	MLOC_52708.1	Available	Available	LOC_Os09g35680.1, FRAME:-2, EVALUE:3e-156, 13109.m03493 protein OsFBX339 - F-box domain containing protein, expressed
CDS Structure of MLOC_52707

CDS Structure of MLOC_52708

Contig Sequence (9513 bp)

>contig_37730 9513 assembly3_WGSMorex_rbca.fasta
ATGCATAGATGTATCAACTATATGCCTAGTATGTGTTAGATTAGTTCATGATCAGTATAT
CATTAGTCTAGTCAATGTCATGTTAGTTATTATTTCGTGGATTAATATATTCGGAAAATT
ACCTATTTACTCAACAGATGCCAATTAAAAGTCACGAGGCAAACTATAGTCGTATCGAGT
GTACTACTGCCGTGTGGTTACACCAAAGATCCCATGTATCAAGGAATTGTTGCCATTCTT
ATGTAACCCTATAATTTTAAAATAAAACTCCTTTCACCCAGGAAAAAGAAGTACAAGTGT
CAAGTTCACGAGCGTTACAGCCAGGATCAAAACCTGGGAAACTGTTCAGCCATTCACCAG
ATACCATTCCGTCCCCCCGACGAACCCGGGAAAAAAAGATCTGACGAAATCCGAAGCAGA
TTAATTCGACAGTACGGAATTCAGGCGGACATGGCATTGCAATTTCACTCATTTTCTTGT
CCCACATCTTCTGAATTATGGAAACAAAAAACACAATCAACAAGATTTGGGCAACTGCAA
CTGTGATCGAACGGAAACAAAATCAAAAGATTGGGTTGCCGAGCCAAGAGCGAGGGACAC
AAAGGAATGAAGGAATGCAAATCAGAACGGACCAAAAAAAGAAGAGAAAGGAAGGCGCAT
ACTACTACATACCAGTAGGTAGTCTCCATCAGTTGGACTTTGGGAGCACCCGCGACCACG
TCGGTAGCATAAAGCCTTTCTCCAGTGGCACAATAGCGCACGTCTGGCTCGGCTGAGAGG
GACAGAGATAGACAGAGAGGAGGCGGGGGCGGAGGCGGCGCCGTCACTCTCTGCTCTTCC
GCTCGTCTCACAAGGCGGCAGGCAAGGTATGCATCGACTCCTCGATCGCCGAGAATCGTC
CGGTGAATCGTGTTCTTGATCCGGGTCGATCGCCTCTCTCTCTCTCTCTTTCACCGTCCC
TTTCCTCCCCTTCTCCGCCAAGTTTAGGATTGCCCGGATATGCTCTGGATTCTGCCCCCT
TTTTCCCCTCTTGTTCTTGGAGCGGCGTGTCTAGCGTGTCGTCTGCTCGGAACTGAGCCG
GGAAATGTATTCCATGGTATGCTAAAGCGGTCGCTGATCGATAGATAAAATAGTTGTTAT
TCGGCGATAATAAGAAGAATATCAAGGTTGGATTTTATTGTTGTTCTTCTTCTTCTTTAG
ATATTCGAGCTCTTTTAGGTGTTAGAAAAAGTCATGGCTGCTCTTTTCAAGAGTTGAATT
AAGCTGTATTTATTTGGAGAGTGTGTGTTTCTACTTCTTCCCGGAGCACAGTAATTTGCA
GAAAATATTTTCTTAATCAGTCTATAAATAGAAAGAGGAATAATACCTGGCAATCATCAG
CTTTTAATGCGATTCCGAATCCAAATTCTGAATGTTCCTTACTTCAGTTAAGACGATAGC
CAGAACAGGTTTATACATGTAGAATGTAGTGTTGCATTGATTGATCCAATTATAGTGTTC
ATTAGCTGCAAATTGCTGCAGGGAAGCGTCACAATTCAGCAATGGCAGCTCCCAATACCT
ACGCAGTCCATGTCTCCTCGGAGACCCATAAGATCGAGGCCTGGTGCGAATCGGACGAGG
CTTTGGCCAGGCAACTGCAAGAGGAGGAGGACTCGCTCGCCATTAGGGAATTCGCTGGTA
TAATATAGTGCCACTGCTCCCAATCTCCGAGCATCTTTTGCATTGTTTGAGGTGGATTCA
TTAGCTGTACTCAACTAATGCTCACGCGTGCTACATGTTGATGCCGCATTGTTTTTAGGC
AGCGTATCCTTGGAACCATCATCACCAGCTGTTGAGTACAGGCCTGCCAATAATGCAGCC
CAGGTTTGTTGCCTTTCTACTCTTTTGCTTTCTTTTGTTGGCTCATTGGGATCATCAACA
CATTCCTTAGAAAGGGATTCCAATTACCTGAACTGAAATTTGAAGGGGGTCCCAGAATGA
TGAGTTGATCACAATGTGTGTATGCAGGTGGCAACAGAGGATAATGTCGACCCGGATAAT
ATGTCATACGAGGTATGTTGTTTTGCTTTTGCGGAAGGAACATTACTTGATGGTTTATAG
AGAACAAACAGTTTTCTAAACGCATATCGTCGATGTGGTTCACTGTCTCAGGATACCTGC
TTCCATACAAAAAGTTCAGTTATACTACTTTGTTCCCGTGATTTGACAATAAAACAATTG
GACATTATAATAGACACACTTTGATTGACATATTGTATGACACAAAAATCTCATTTCTGA
ACAACTTATTTACTACTATTAATTTGGTATTGTATTGTGTAGCAACTACAAGCAATCGGT
GAAGAGGTAGGAACTCAATCCAGAGGATTATCTGATGACCTGATAAGCTACCTGGAGCCT
TTTAGGAACAAATGTAACTTCTTCTCGAGCAAAAAGAATACCGATGAGTACGTGACATTT
GTTTTACTCTGAGAGTCGGTCATCACTTTGTAACCCCAAGGCAAACATATAACTATGTGA
TGTCTCCATGCAGATGCGTGATCTGCAAATCGAACTATAAAAGCCGAGAGAAGTTGATAA
GGCTGCCCTGCAGCCATTGTTACCATGCAGGTTGCATAACTCGCTGGCTTAAGATTAACA
AGGTAAAACTCAGTTATTTTTTCTTTCACTAAAATACCGTTTGGTTTAATTTTGATATGA
TACAGTTCAAATATAAGTTTTTCGTCCTCTATGAATAGATGCTGAATGTTAATATAAACC
TGCTGTGTCGCTCAACATAAGCAAATATATTCAGATATGGAGTGTTGCTTTTTTAGTAGA
CATCGTCTGGACGCCATATCAAAATTCTCTGTTGTCTGATATCTTGCTGTACAATCCTCT
GTTGTTGTCTGATATTCAAAAGACTATCTGATTCTTTTTCTGATATGCATATTTGTTTTC
ATTCAGGCATGCCCAGTCTGCAATGAGGAGGTATTTGGTTAACTTGCGATGTTTGTGGAG
ATGGTGTGGACTCGTCGCCGCGTGATGATAATGGACAATCTTGCTCTCCTATGGCCTATT
ATGCTATATATATATAATTCTCGATGGTGTGTCGACTGTCGTGCTTTAAGAAAAAATGTA
TTTTGGATCATGCCATGTTTGATGTCCCCCAACTTAGTTTTGTCATTAAAATGATGATAA
ATATGTGCGGGCAGTGGGTTATATGGTTTGCAATTTTCCGAGAATGCAACCGAGCAGGAG
CAGTTCAGTAGGTGATCTGGTTTGTCAAGTATTGCACCCTCTTTACATCAGCCCACTGTG
TAAAGTCTGAAGCAAGATTGTAAATGTTATATATACACATATATAGGACATGCATTTTCT
ACTCCCGGGCACATGTCTCTCTTTATAGTTTGAAAAGTTCAAACAGGATGTTTATTTATA
TATCTCTATTTTGCTATCCTTGCTTGTTTCAGTAGTGGACAATTGGGCATGGTTCTTTCT
CTGAATTTGCTATCCTTATTTGAGTGCTGTTGCATCAGGGGCACAGCAAAGGCCACACGA
CAATATTAATATCCTCGGATCCTGGATTAGCATTGGATCTCAGCGTCATTGGTTGCCTAA
ACAATGGCGATCGATTGCAGATGGTATTAACTAATAAGTACTCCCTCAGTTCCTAAATAT
AAGTCTTTTTGAAGATTCCACTAGGGAACTACATACGAATGTATATAGACATACTTTAGA
GGGTAGATTCACTCATTTTGCTTCGTATGTAGCCCTAGTGAAATTTTTAAAAAGACTTNT
ATTTAAGAACGGAGGAAGTAGTTAATTAATTAAGCTCCATGATCCAGTGCTGACACTGAT
CCACTCCATCCGGTGTACATAGATTCCTGTGCTGATAGATGTTCTTGTCTGCATCCCATC
TTTTAAAAAGTTTAAGTTGTTCTTTCCATGATTAATCATTCTCTGGTTAGTTGCATAAAG
TTGTAAAGTGTTGGATGTGGTGTGATGCAACCTACAGCACAAAGTCTCTTCTCGATGACC
CTACGGCTGTCACGCGTGATCTCATCTCATCCGGTGGCATCCTCAGTGTCAGCAACAGGT
GTTCAGCACCAGCACACCTATGTTCTGTGGCGAGGCTGTGTTGTCGTAAGCACACCCCAT
CCACATCCACACGCCCCCAAAGGCCTATCATGTCCCCAACAAACAATTTTTCACCCGTGT
TTTCGTTTTGTTATTCAGGACCTCTTTGCTTTGGATGAAGCTGTAGGAAAACTAGAGAAC
ATACTTCACGCGATTGCCGAGGGAATTGGATGCAGCTATTTTTACTATCGAAATTGGCAT
TATAAAACTTTAGTACTCCCTCTGATCCATAGCAATTTTCCAGTTTTCCAACACTGTCTT
GGCTTTGCTACTCATGACCTCTTTGATTTGAATGGATCTTTGCGGAATTTCGTAGAGTTT
GGAGCCTTGAAACATTTCCTGTAGTGGTGTTTTGGTTTGTTGGACCAGAAACCTCAAGGG
TTTCTCTAAGAATTAATCTCACTTTCAAAGTGTAATTCTCATTGTGTCTAATCTCATCAA
GCATAATTTAGTTTTTCATGTGATGTTTCGCTGAACATAATATTGTGTCAACTCTTCTGG
TCTACAACAATGTAAAATTCAAAAAGGCATGGTGCTTCAGTTCTGTTTTGGAAATCCTGC
AGATCAAGGAATCAAAGAGGACCTCAACGGGCAAAGAGGGAGTTGAGGTAGTAGGTTGAA
AAGAAAAAAAGAGGAAGTTGAGGGGAATTTGATTCAGCCAAGCTTTGGTACACAAGGATC
AGGTGCCATAGAACATAGCAAAAGCAAACATGTATATATGCCACTAAACTCACAATTAAC
AAGGTGTGACATGTTTGATGCTCCTATAGGGACAAGAGGAAATAAAAAATCACTCACCCC
TCCAATTATATTTACATTACAGGATCGAAAAACAGCGACAGCCGAAAGCACACTACGGCG
GAAAACAAGCGAAACCATATCATTTCTACAGATCCAGCTTAATCTCTGCTCACCAGATCT
ACTCACAACTCCTAGGTCCCTTCCGCGCAAGGCATTTGGGTTTTATAACCACTGAATCCA
TACACAGGCCTCCTTTTGTGTGTGTGCAGTCTATCTGAACCATCGCAAACTGGATATTCA
GTGGTTCGTTCGAGTTCTTCACGGCAAAATCGCCGACATGATGATAGATCCACACGCCTG
GGTCGGTAAGGTAGCACTTGGACTGGGCCTGCTGCCCGTCTGAAGTCGATAGCTGGAAGC
GCACCGGCTTTACGTCCCACCCATGGATGTGCTCGGCACTATAAACCCGACGACCGAGCC
GCTTGAAAGGCCTGCCCAGATGAATTCGGAAGAACAGGCTATATGTACCTTCTGGGAAGC
AGAACTTAACCTCACCTCTGACTTCAAACCACCAGATTTGCGAGAGATAAGCAACCGAAC
GGAACCTGCAGAAAAAGCGGCATGCTTATCAGGACTTCTCTTATCTGCCAAATGTTTGGA
ACACTCTGGCTCTATAACCATATACAGTTGACAAAGCACAACTGTACAAGCACATAAGAT
ACATTTTTTTTAGAAAAGGAGGCTTTGCCCCGGCCTCTGCATCAATAGAAGCACATAACA
TACATACTTGTACCGCATTTGGAATGGATATGTGTTGTCGAATGCCAGTAAAGCAAGCCT
TTGGCATGCTCAATTATCTCAAATGAAAGGCATGATTAACAAAGCAAACATGCTCAATTA
TCTCACATGAAAGGCATGGTTAACCTATGCAGGCATCATAAGAAACAACTACTGGTACGC
AAGGGCTTATCACGTTCCAACTGGCATACATTTCAGGGGCCACTGCAGATAATCACACCC
CTAGTTGGTGACATGCGGAAGTAGTGTGTTGTTCATAATCCCGGTTTTTTTTTTTTTTTT
GCTTTTATCAAGACAAGACAACTAACTGGTAGTTGCAGCTTGTAACACGAGTTGAACACA
GATAGAGTTGATGTAGTTTGCACCATTTGGATTTCTTTAGTGGCCATGACATACGACAAG
CGAGCTCTACAAATAGCGGGAGGTGCTGCTCAGCTTCGGCGATACGCACCCGGAGTTCAG
ATACTCACCCACAAACCAAATGCGCCTGGGCTGAAAACTGAAGTTGTTGAACACACTTCC
AAGCAACATAGTGCAAGAAAATTCACATATCATGGCACAGAGTTTCTATAAATGGGGCAA
TTATGAGCTGTCATGTTTGGTTTTGATGAAAGCACCTTGATTCATCATTTGGAATGAAGT
TCCAGTATCTCCTGTCATCAATGCCTGTTATCGAAAGCGCCCTGGAATAGATTGTCATGC
AGGTGCCTCCACCAGCCTTGTCGAGCCAGAACTCCTGCACAATGAATCAGATAATGAATT
CCATTTGCAGTAGCAGTAACAAATTAGCAACAGTAATTCAATTCAAGGAAAACAAAACAA
GATCATCTTCAAATCGGCGTATATGAAACTAATCAGACTTAAACTCAAATTCCTGCACTT
TATTAACACAAACTTCACGCCAAAATAAACTCAACTTCCTGCACCTTTACTAGCAAAATC
AAATTCCCGCAGTTTTATTAATTTGCCGGCATACTAATTTGCACAAGGTTTGTCATAAAT
TTTAGAACAAATTACGGGAAATTTTCAATATTTTTAACAGACGCAGTTTGCTTCATAGTG
GCGATGTTAACCAGAAAGATGTGACAGAGCACACACCTTGGTGCCTCCGTCGAGGGAGTT
GCGGCGGCAGAGCCGCGCGTACACCTCCTTCTTTGGGATTGCCTCCGCCTCCAACGCGGC
GGCCTCCTCGTCGCCACCGCCGGCGGCGGCGAGGAGGCGCGCGTAGTTGCGCGGCAGCTT
GGCCTCCCAGACGGCGTCCCCGGACGCGGCGCCGCGGAAGGTGCGGCTGAGCCGGGCCAT
GCCGCAGATCTCCGTCGGGTTGAGCCTGAGCATGACCTCGGCGACGCAGTTCTCCGGCAG
GTCCCCCAGCGCCGTGCCCCCGCCGCGCCTCGCCGACGAACCAACGGCGCCCATGGATGG
ATGGCTCGCTCGACCGAGAAGGAAACGGCCGCCCGCCGGGAGCTCAACAGTAGAGGGTGA
GCCGCTTGGAGAGCAGAAGCAGGGAGGCCGGCGACTTGGAGAAGAGCGGCGTGTTACGCC
TCACCGCCGAAAGGCCCATCCCTCCGGTGCCACTGTCACCTCGCCTGCCGTCGGAGAGCG
GAGACCTCCCGGCGTCGTCGTCGCGCTCGCCTGTCCCAGCAGGTTCTTGCACCGGCCGGA
TCGAACAGACTCTTGGTCCGCCCGACTGTTGCTGATCGATCGAAGAAGTTTCTGGCTTCT
GAGCTTGCTTGTTCTTGGCGTGTGCCGGGTTAGGCCGGTGCTGGGGCGGGGAGCGGAAAC
GGGATAGCGGCCGCGCGAAGGGAGTGGAGGTTGTGGAAGACGACCGTGCGCACCCGCAAG
GGAAAGTTAGTTTTGTTCTTGGCCGTGGGGGGGAAGGGGGCGGCGCACAAGATTTCTTCT
CCCTTTTCCCCGTCTGGGTGCGGTGCGGTGCGGTGCGCTGTGGTGGGAGCCGCGTGTCGC
GAGGTGGTTTCGTGCTCGTCTGCCGCCCCTCGCCCTCGGACGCGGTGCGAGTCGCTGTCC
GGGAAGACGATGATTCACCCAGTTCACCCGCCGTCTCCTCCTCACCGTTGAAATCGACTG
ACTGCTACTGTGTGCCCGAATTGTTCTTGTCGAGCAAAGCAAAATGTCGACTTTGTTCAA
GGATTTTCTTTTTTCCTTTTTCCTTTCTGTGCAAGGAGAACTTGGGCGGTGGCCAATAGA
AATGTCTTTTTTTTTTAGAAAGAACGTTTTTATTGATTCATAATGTGGCATCGGGCGATA
CAAACATAATGAGCATACACCCGGTCTCTACATAATTAAAGACGTGTTTGATCATCTTCC
TCGTTTTTTACACTTTGCATACTTGTCTCGGTTAAACCTGGGTGAGCATGTGCCGAAAAA
ACAATGTATGTACTCCCTCCGTTTCTTTTTTAGTCCGTATATAAGATTTGATCAAAGTCA
AACTTCGTAAACTTTGACAAAATTTATTGAACAAAATATCAACATTTATAATATGAAATC
AATATTAGTAGATGCATCATGATATTAATTTTCATAGCATATAGGTTTCGTATTATAGAT
GTTGATATCTTTTGATATATATTTGGTCAAACTTTGTATCACTTGACTTTGACCAAATCT
TATATGCAGACTAAAAAGAAACGGGGGAGTGTGTTGATTGATTGCGTGCATCCCCTCTAG
CATGCATGTGCTGAAAGAGAAGGCATGTTGTTTGGTTGTGGCCTCGTTTGAGGCGAAACA
CAAGTCCGGTTGTTTGGTTACGTTCAGGACAATAAGTGTGGTAACCTCCTTCTCGATATG
GTGAGGTTATCAGGGACCAAAAAATAGAGCAACTAGAACAAACTTAGAAACACATCAAAA
TTTAACCACACACAGAACTTAGTATGATAAGTTTTAAACGATACAACAACACATAGTCTT
AAAAGAACAACCAACACGAAACTAGAAACCGTGAAAGCCTCGTCGTGCTTCTTGCACTTG
GTGACCACCTCCATGTCGTCATTGTTGAAGACGGTCACCTTCATGATGTTCGGGATGAGC
AACTTAAAAGTCAGCATGTACCCGATCCTGACATGGTGAACGGCGGCGAAGGTGTCCCAA
CCCACAAGGGGACCCTGCCGTCGACCACCTTCACCATGACCCTCCATGAGCACGCGGTGG
TTGTCTTCAAACTGACTCTGTAGGCACGGCGGGGAAGTGCTTTGTGATGTCCAGAGGCAA
AGGCAAAGCCTCCAGCCACAAAGCATAGATCACCTTGCATAAGTGGTTTGGTTTGCCTCC
TCATGGTAGTGCCCGTAGTTCCACCGCTTGGTGTTAGGGTGATCCTGCACCGACACGTCC
ACCAATGGCGGCACGGCCTCCTTGCCCTTCTCCATTGATGGCACCACCTCCTTTCCCTTG
TCTATCTGCATTATCAACAACACGTAGTTCAAATGTCAGCATTCATTCCTACCGGCCTAA
CGCTCCTATATTTACCCACACTTCTTACTAAGCACCGCATTCAAACCCTCTCTCATTTTC
ACCCCCTCTCTTCTTCAACCTTCTCCATGTCAAGCTTCTTTGTTTGGAGCTCCAGGTATA
TCTTCATTTGCTCCTCCTCTCCTTCATCACTTTCTTTTGAGTCATCTTGCCTTGCAAAGT
TTCTTGTAAGGCGAAGGATGTCGCATCACGCTTTTCGTTAATCATTGAGTTGGTCTTGCC
CCTCGGCTTTTGGGGACGTAGTAATTTCAAAAAAAATCCTNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNAAGCGTTACTAGAACGCGGTTGAAGGAG