morexGenes - Barley RNA-seq Database

Contig contig_37727
Source Contig contig_37727
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_37727 (6423 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_37727

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_52704	1	860 bp	MLOC_52704.1	Available	Available	LOC_Os02g36850.1, FRAME:+3, EVALUE:5e-78, 13102.m04026 protein oxygen evolving enhancer protein 3, identical, putative, expressed
CDS Structure of MLOC_52704

Contig Sequence (6423 bp)

>contig_37727 6423 assembly3_WGSMorex_rbca.fasta
AAGATAAAAAGATACATAAAACATCCGAAGATGACAAGATAATAGCATGAAACNNNNNNN
NNNNNNNNNTACGTTTGAGACGTATCAGGGCGCAATGATGAACCTGGGGTGCTCCCCATT
GCACGAATCTACAACGAGCTTGAGGGAAATGATTTTGGGGTGGAGTAAGACAGTAGCCCT
CGACGTTGGAGACAAGTTCATGTGCTACTGAGGGTGTCCCAGACTAGGGGTAATAGCCCG
TTTGGTTTGGCTTCCACAGGCCGAGTTAGGACCCACTTAACCAACCGCCTAGAGTGCAAC
TGAAGTTGTGGGCCTCGTCGTGAGCAAGATAGAAGCCACCGAAGACTTGACTATACTTCA
AGGAGAGTTCTGGCATCTCGTATGTTTATCCTTAGTTGGTAACCTACCTTACATAAATCT
AGATATCCTTGGTGTCTATATAAACCAAAAGTTTAGGTCCATAGAGACACATTTACACAC
GTTAGGGTTTAAAGCGTACTCATACGATCTCGAGGTAGATCTCCTTTTACTCAATAGCCC
TCACGTTAATATAATCAGAGTAGGACGTAGGGTTTTACCTCCTCGAAAAGTTGTGAACTT
GAATAAACTACGTCTCCCTTGTCTCTTGTTATTCATTGACCCTAGATCCACAGCTTACAT
CCCATACCCAAGATCACCCGGGTTTAGCACCGACACACGCACCACCACCCACCGCGCGAG
GAGTAGTTTTCTTAGGTACTTAACCCGGTGGACTGATGTGAGCAATTAGCATGATGTAAG
TTGCGCGTGGAGCCTCATTGCAACGCGGGTTTGTACCCATACGTTACGGTGAAGGGGCTC
TTTTCATATTTTTTTCATCTAATATATTGTACGCATACTCGTGCTTATTCTGAAAAAAGT
TAGACTAATAGGTAAAATTATGAAAACATGATAAAATTGTAAAAACATATAGGCGAGTGC
CCCTGCCAATTTTCTTTATCCTGGTCGCCCAATATCTCCGGTGATTCTCAAACCACAAGA
AATGCACGCATCTCTGGCCATCATCTCAACTTCTCTCACTCAACGGTCCTAAAGAATTTC
TCAAAAAAAAAAAAAAAACGGTCCTAAAGAAAACAAAGTAGATATTATCCTTACCACTCG
ACTCACACGGCCACACCCTTTCCTCCAACCTCAAGAAAATAATATCCTGGGCCTGGACAC
CAACAGAACCTCACCCTCGTTCAGACATACTCCACTCTATTACTGAGCTTCGCCGTCAAT
GGCCACCCTTGTCAAGCACCTCATCCTGTGCTCCAGCACTACCACATCGTCCTCTGCTAC
TCCGTCCCCGTCGAACCGTCGCCCGCCGTCATCGCCCGACGGTGCCGACAAGCGAGCCCA
CCTGACGCAGTCCTCCACGCGCCGGCTCGCAGTCGCCGCGTCAACGGCAATGGTCGCAAC
GGCCGCACTTTCCGCCCGGCGACCCGCCGCGCCGCCCCCAGCCATGGCGGCGGAGGCGGC
CGCTGTGCGGCTACCGGTGCCCCCGGGAACAGTGCCGAGGTGGGGCACGAGGTCGTACGT
CAGAGAGAGGTTCTTCGAGCCCGGGCTGACCACGGAGGAGGCCGCGGCGCGCATCCGTCA
AACGGCGGAGGGGATGCGGACGCTTCGGCCAATGCTGGAGACCATGTCGTGGAAGTACGT
ACTGTTCTACGTGCGGCTCAAGTCCAAGTACCTCGACCTCGACCTCACCACCGCCATGGC
CGGTGTCCCCGAGCCGCGCCGCCCCGAGTACGTCCTCGTCGCTAACGAGCTCGTCGACAA
TATGACCGAGGTTAGAACCATTTGTTCTGCACTTTTGCACAACAGTTTATTCGTTAATTT
TCTCGATAGATGCAGTATTTCATTCTGATGAAGTTGCCGTGCAGTTCGACCGGTTTGTGC
GGACTCCCAAGGTGTACGAGTCGTACCTCTACTATGAGAAGACCCTGAAGTCGCTGGATG
ACGTGGCAGAGTTCCTTGGATGACCTAGGAATGTATTCCCGTCTATCCCTCCGTGAAGTG
TTAATATTCACACTATAAATATGATGATATCAATTGCTATGTTGCTTCAGCAAATATGCA
TATTCTAGATGCAACTTTCGGTCCATCTTGGACGCTGACCCAAACCGAACGCTGCATCCG
TCCGAGGACGAAACGATAAGTTCATGTACATCCATACGGGAATCGCCAGTTCAACCGTAC
ATCTGGGACGGCTTGTTAACAGCGCAGTGCTCTGCTCCGACGCGCCGGCCGAAAGTTTCG
GCCGGCTGCCCGCGGGCCGCACGATCCGTCAGCTGCCGCGCGTTCACATCGTTAGGTCTA
TCCATGCAATAAATATTTTTTTAATGCAGTAAATTTTAATCATGGTGCAGCAAATTTTCA
TATGATTGCAACAAAAATATGGTTGTAACAGAAAAATATCAACGTGATCGTAGAAAAAAA
AGACGTTGATGATGCGTGGTAACAAAACAAAAAAGGGGTGTAGCAAAAGAATCCGATAAA
CTCGAGTTGCAACTCTCACAAATGTAGATGCAACTTTTTTATTGAACGGTTGCAGCAAAA
AATGATGCTGGTTGTACCAAAAATTAACACGGTTGTAGCAAAAGTAAAAAAACACCGATT
GTAATGAAAAATTCGACGAACTGGAGTTGCAACCAAACGTATATGCAACTTTTTTATTGA
ACAAATGTAGCAAATAAAAAACGCTTGTAACAAATATAAACGCTGGTTGCAACAAATTTA
GACGAAAAAAAAGTTGCATGCCTAATCAACGGTGTTAGCTGGTCGCGTGCAGCCGGCCGA
ACTGTTCGGCCGACGCACCGGCCATAAACGTTTACCTTGTTAATATATACTGGTACGTGC
CTTATAGGTCAAAGAGAGATCTCAACCAGATCAAACAATACCTGAAAGATTGAGATATTC
CTATACAATAACTATACATAGATATACAAGGAGATACTCTAACATCCACCGTCGGTTTGT
GCATCCCTAGGCAATAGGCATAAAGTGGCACCATAATCCGAGAAAAGCTGCGATGGCAAG
CCTTTTGTCATAATGTCGGCATACTGTCGAGATGATGGTACATGGAGCACCCGAACCTGA
CCAAGCGACACCTTCTCGCGAATAAAGTGAATGTCGATCTCGATGTGCTTGGTGCGGCGG
TGTTGGACGGGGTTGGAGGCCATGTAGACTGTGCTGACATTATCACAAAAAACAACCGTA
GCGGATGTCAAGGGGTGATGTAGCTCGGCAAGAAGTTGTCGGATCCAACAACACTCTGCG
ACGACATGAGCGACTGCACGATACTCTGCCTCAGCACTGGAACAGGAAACCGTGGTTTGC
CGCTTGGATGACCAAGAGACCAGGCTATCACCAAGATAGACGCAGTAACGAGACGTAGAG
CGGCGGGTGTGAGGGCACCCAGCCCAATCGGCGTCGGAGTAAGCCGTGAGAGTCATGGTC
GGTGAACAAGGAATGTGCAGGCTGAAGTGAAGGGTCCCTTTGACATAGCGCAAAATTCGC
TTTATCAAGTGGAGACGGAGCGCCCGTGGGGCATGCATGTAAAGACATGCCTGCTGCACT
AAATATACAATGTCAGTGAGCGTGAGATACTGCAAGGCGCCAGCATAACTTCGATAAGCG
GTGGCGTCAGTGAGAAGAGGAACGTCGTGAGCCGAAAGTTTGACCTTGACATCAACCGGA
GTGGCCGTGGGATGACAATCGGTCGTGCCTGCACGCTGAAGAAGATCCACGGCATGCTGT
CGCTGGGACAAAACCATGCATGTCGTTGTCCGTGTGACGGAGATGCCGAGAAAGAAAGAC
AAATCTCCGAGATCTGTCATGGCGAACTCCGAGTGCAACCGCTGAGTCATGTGCTCGAGG
AGCGCAACTGAGGAGGTAGTGATCACAATGTCATCGACGTAGAGAAGAATGTACTCGATG
GCATGTCCGTGCCGGTAGATGAAGAGAGAAACATCCGACTTCGACGCAACGAAGCCAAGG
CTATGCGCGAAGAGAGCGAACCGCTGGTACCATGCTCGGGGTGCTTGTTTGATGCCATAC
AACGACTTGTGGAGACGGCACACATAGTCGGCATAGCGTGCGTCGATGAAACCAGGCGGC
TGCTCGCAATAGACCTCCTCATCAAGATTGCTGTTCAGAAAGGCGTTCTTGACGTCAAGC
TGGTGGATCGGCCAGGCTCGCGATACCGCAAGACTGAGAATGATGTGGATGGTAGACGGC
TTGACAACCGAGTTGAACGTCTCGTCGAAGTTGATGCATGACTGCTGAGAGTAGTCGCGG
ACCACCCACCGGGCTTTGTAACGAGCAAGGCGGCCATCGGAGTGAAATTTATGCTTAAAG
ATCCACTTTCCTGAAACAACATTAGCACGAGGTGGTCATGGAACAAGTAATGACGTGTTG
TTAGTAACAAGATCCTCGAACTCGTCGTGCATGCAACGACGCCAGTGTGGGTCATTGAGA
GCACCCTGGTATGTTTTTGGGAGAGGGGAAGGGGAGTTGGAAGGCATGAGGTTTAATCGC
TAGATGGGTTTGAAGATCCCGCGCTTGGCACTAGTGTGCATAGGGTGTGTGTTGTTAGGT
GATGGAGGCCAGTGGACAACTACGGGAGGAGACAACACACTCGAGTCAGGATACGAGGAT
AGCGTGGTGGTGGACAAGGCGGGCGACATCGTGGAAGTGGAGGGAGGAGTGGGGAGGCCC
GAGTTAGAGGGTGGAGAGGGAGACCCATCGGGGCTCCATGGGTTGGCCTGGCCAAAAGTG
CTCGGCTGGTTAGGTGGTGACCGCGAGACATGGGACGGTGGAAGAGTGCCATGCAAAGCG
GGCACATGCATAACGGGCTGGGTGGGTGCAGATTCGGCAGGTGCAAGATGCAGAAGGAAA
TCAAGGGAGGCAAGCTAGTTGGAGGGTCGATCTGGGAGTGGGAAAAGGGGAAGACTGTCT
CGTTGAAGATCACATGCCATGAAATAATGACGCGACGGGTCAATGGGTCAAGACATCGGT
ACCCTTTGTGGTTACCGGGGTAACCAAGAAAAACACACGCAAGAGAGCGAGGCGCGAGTT
TATGCTGGGCGACGACGGACTGGTTGGGATAGCAAAGGCAGCCAAACACACGGAGCATGC
TGTAGTCTGGCAGGGAGTTATGAAGACCGATGTATGGTATAGAAAACTCGATAGACTGAG
ATGGGAGAACATTGATGAGGTGAGTTGCGGTGGCGAGTGCTTTTGCCCAATATGAAGGTG
GCATGGACGACTGGAAGAGCGGAGTACGTGTGACATCATTGAGAGTGCGAATGGCACGCT
CGACCTTGCCATTCTGAGCCGAGGTATATGGGAATGAGAGGCGGAGATGGATGCCGTGAG
TGGAAAAGAACGTGGTGACTGTGGAGTTAAGGAACTCTGTCCCGTTATCGGCTTGCATGG
CCACAAGCGGACGCGAAAATTGTGTGCGGGCGTAGGCGACAATTTATGAGAAGGACGGCG
GTGTCAGATTTTCGGGAAAGAGAAAACGTCCACATGTAGTGCGAGAAATCCTCCACGATA
ACAAGATAATATTTCAGACCAGAATTGCTTAAGATTGGTGATGTCCAAAGATTACAATGT
ACTAATTAAAAGGGTACGACACTGCTCGAAGTAGACCTAGCATACGGCAAGCGCACGTGT
TTGCCAAGTTGACATGCGTGACAAACATGCGAGGCGGCTTTATTACATGGGATAAAAGTC
TGTTTATGAAGATGTGACATAGCGCCACGATCCGGATGACCTAAGCGACGATTCCAAAGC
TCGGTGGAGGTTGTGGCAATGAGTCTATGGGTGTGATGGTTGACGACAGATGACAGAAAG
ATGTAGAGGTATCCAGGGCTATTGCGGTGAAGGATCAAGACCTTGGTGCGAAGGTCCTTC
ACAGAGAAACCGAAAGGGTCAAATTCTATTGAGCATAAGTTGTCAATAGTAAACCGACAA
ACAGAGAGAAGGTTTTCGATGATATGAGAACAAGCAAGAGTTTGTTAAGAAAAAGTGTGC
GAGTGGAAGTAGAGATGGATGCATCACCAGTGTGGGAGATAGGCAATGTGGAGCCATTAC
CTATAGTGACAGTGGAGGAGGAGGTGGCAGGAAGGAGATTGTGAAGCATACCTGGATAGG
AGGCCATGTGAGAGGTAGCTCCGGTGTCCATCCCACTCACTCATGTTGGAGGCGGAGGCT
GCGTTGTTCAGGGCGCCCATGAGTGCTGAGAAATCCCAAGTTGGATGGGCGTTGGTGCCG
AAAGCCTGGCCACGAAGAGGCGCCAGGGAAGTGAAGGCCTGGGACGACGTCCACACCGGG
GGGCGCGCTCCGAGGTGGCCAGCTCCATTGCTTGTCTGCGTGACCGGGGTGTCCTGTGGC
TGG