morexGenes - Barley RNA-seq Database

Contig contig_37675
Source Contig contig_37675
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_37675 (7802 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_37675

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_52640	1	742 bp	MLOC_52640.1	Available	Available	LOC_Os06g49070.1, FRAME:+2, EVALUE:6e-25, 13106.m05233 protein expressed protein
MLOC_52639	5	3512 bp	MLOC_52639.2	Available	Available	LOC_Os06g49060.1, FRAME:+1, EVALUE:0.0, 13106.m05232 protein ternary complex factor MIP1, putative, expressed
CDS Structure of MLOC_52640

CDS Structure of MLOC_52639

Contig Sequence (7802 bp)

>contig_37675 7802 assembly3_WGSMorex_rbca.fasta
CAATACAATCAAGGAGGACGTAGGGTGTTACCTCCATAGGAGGGCCCGAACCTGGATAAA
CCGCTGTCTCCCCCTTCTTCCTACAACCCATCGATCCAAGGTCCACCGTTCTGGACCCCG
TACCAGAGATCTACCGGTTTTGACACCGACACCATGGCTCTCGAAAACAAAAAAGGATGT
TTCTTGTTTTTTTCCTTCGCGAGAAACACGGGTTTGCTTCCGCGAGAGCCATGACCGTGC
CCTTCGAAATGGGAAAATCATATATTTTTTCTTTTATGAGAGGTACGGTTTTGCTTGCAC
GAGAGGCATGACCGTGCCATTCGAAACAACAAAAATTTATTTTTTCCTTTTTTTTCCTTT
CACGAGATGTACGATTTTGCTTCCGCAAGAGACGCGGTTTTGCTTCCACGAAAGGCACAA
CCTCTCGGAAACCAAAAATAAAACGGGTTTTCTCTTTTTTTTTAGAGGCATGATTTTTTC
GCCCCTGTTTTTTATTTAAATGCCCGTCAAAATCTATCAACATGGTATTTAGTTTTAAAG
ATCTCGACGCAAAGAATCCAACGGTAAAAACGGTTTGAGATTTAGACACATGGTTTAAAA
AATAAAACATTTTTAAAATACGGATATAGAAAAAAAAATCAGGTTACGACAAATGACATA
CATATAATGCGTCACCTGTTGCAACATGAGAAGATGAAAGCGATCTTTGAAAAGGAATAT
TTTTCAATTAGTGATTTGGGGCTATGGACGGGTTTGGAAACGTGCAAGTCGTAACGGACC
TGAGCCAACAACTTGTAGCGAGTTACCTTGTCTTTTGTTGATACAAATTGTGGCTAACCT
TGTTGGGTAGGGAAGGCCTGCTGCTGGACTCGTTGGTACCTTTATCCTTGTTGAAGCCCA
GGCCAGAACGGTATAGTGGGATTGCGAGAGAAAGTGGCGCGCTTTCGACATTGCTGCACT
TTACTCCCGGTAGTAGGGCTTACCGGATTATTGTTAACTCATGGGGCGGGGCGGGGCGGG
GCGGGGCGGTCGTCTTCATTGACCATTCATTGGTTGTGCTTTCTTGGCAAGCATCACGCA
CAGCCACGGCCTCAGCCCCACATGTTGTCTTTACTGCGGGGTCAGTGTAAACTGTCACCA
TCCATCCCTCCAGTCGGTCGCATTGAATTGAACCACCCTCCATCACCAGCAGCGCGATTG
AATGAAGCGAAACAACCGAGCTGGGGCGGCATTGACGACACATGCCAGAACCTCAGCGGG
GCCGTGGCGTATGTAGTACAGGAGGATGAGCAGTAGGATAGCTGTGGGTGCATCTGGCCA
CCGGTTTGCAGTATTCATTGCCATGGCTCCGTGGATTGCAAGCGCCCTTTGTGTCACCGC
CGGCAGCAGCGTTGTCCTCCAGGATTTTCTTTTTGGCCTTTCACGTTTGTTTTGTTGATG
GGGCCAGGGCCAGGGCCAGGGCCGGGCAGGCGACGGTTCGAGTTTTGAAGTTTTGAACTG
CTAGGGCGAGGAGGAGGAAGAGTATGTGGATCTGCGTTGGGGTGGTGACAGACAGGTCGG
TCAGAGAGCGAGGGGACGGACGGACGGATCGGGATCATCGGTGCGCGCTCCGCATCGTTG
CTCCGTGGGCGTGGGGCGGCGTGCGGACACGAACGTAGATGTAGTAGTAGCATTTTTGGG
ACACGAAAGCTGGGCGCGACCACCGCTCCACTAGCCGCGGATACGGTAAACAATGCGCCC
CCCGTAAAAGAACAAAAGCGTACATGGCAAGGGAACAAGCGCGCCGGACAAAAGCCATCG
CGTCGCCTTGGGCTCGCCCTCGAGTGTCCCGGCGCCTCGGCTGGCGCAGAGAAGAGAAGA
AGAGACGCGGCGCGGCACGGCAGGCACGCACGTAGGCCAGGTCCGCGGATCACGCCGCCT
GCCTGCCTGCTATGCTAGCTCCCACTCCCAGGCGAGGTTTGGTCTGGCAGTCGAGTCGGG
GCCAGCACCCAGCAGCGAGGTGGCTTGCTCGCTCCTCTTGTCGCGCCTCCGCATCGGGTC
GCGAGTTGGCCACCCACCACTCCTCCACGCGGACGGCACCTCCCTCCCTCCTACTAGCAA
CACGTCCTACTAGTAGACAGGAGCATTTCAAATTTTGAAGTTTGCACGTCTACCCTTCTC
CTTCTCCTTGCCTCCTTCACAGTCGCAGTCGCGGCGGTCTCCTCGTCCCCCGGCTCCGCC
CCACCAAATACGCGGAACCAACACAAGCGCGCGCCCGCCCGCCCGCACGCTTCGTCCCCT
CGCCATTAACTACCAAATCGTTCCCGTGGACTCATAGGTACGCCTCTTCAGTCGATCGTC
CTTGGCCAAGAACCGAGTCCCCGACGGAGTCGGAGCAGGAAGCCATGCCGTTGCCGCGGG
GCAAGCACAGGAGGAAGGGCTTCAGGTCGCACCTCGAGCAGGAGGTGCTGAGGCTGCAGG
AGGTGCTGCGGGAGGAGACGGCGCTGCACGCCATCCTCGACAACGCGCTCGACCACGCCG
CCGTCACCCTCGCCGACATGTCATACCTCCCCACCCACGTAAGCGCGCCGCCGCCGCCCA
TTTTCTGGCCAACAAGTTAGTTCAGTATGCATGAACGCGTTTGCCTGCTGTTGTGCCTTC
AGGCCCAGGAGCTGCTCTCCAGCATCTCCGCCATGGAGGCCGCCGTCTCCAAGCTGGAGG
AGGAGATGGTCGCCCTGCACTTCCAGCTCATCCAGGAGCGCAACGAGCGCCGCATCGTCG
AGTACCGCGCCAACGCCAGCCACAACCAGCATCGCCCCCTCTGCTCCCACTCCCACCGCT
CCGCCGCCAAACCCGAGCCCGAGCCTGAATCCATCCATGGCGCTCTGCAGCAGGACACGG
CGGCGAGCGACGCCAGCAAACCCAGCAGAGGGGAGAAGGCCCACCCCAGCGCCGCGGCCC
CGAAGCTGCTGCAGCGACAGTTCTCAACCAAGGCCCTCGGCGGCGGCGCGGACCCGAACC
GCCTGTCGGAGGACATCGTGCGGTGCATGAGGAACATCTTCATCTCGCTCTCCGACTCCT
GCCGGGAGGCCTCCAGGGCGACCAACCACTCCGCCGCCGCGGAGGGCCAGCGCGCCGGCC
CGTCGCCGAGCGGGATCGCCGCCTTCTGGTCGCTGTCCGAGCCGTCCTCCATCTCCTCCT
GGGTGCAGAGCCCCCAGGTGGACCTCAACCACAACAACAACCTGCTGGCCTCCGAGACCG
TCTTCGACCCCTACAAGGCCCGGGAGAAGCTCAGCTGGGCCGACATCGGGGGCTACGGCG
CCGCCTCGGAGGTCTCCTGGATGTCCGCCGGGAAGAAGCAGCTCGAGTATGCCGCGGAGT
CGCTACGGAAGTTCAGGTATGCTGTCAACCAATCCTTGCTACTAGTAGTATATTCCGAAG
TCTACTGGCTATGAATGAGTAGGTAGTTACTAATCAGTGACAATGTACCAAACAAGTCAA
CAGCACACCTTGTCTAGCCCAGGAAATTGCAACTTTAGTTCCAAGTTTGAATACCAGAAA
CATGGACAGGGTTCTTAGCATTTTCGTGATGCTTTGGGCTTGATTTAAAATTCACTAATC
AGAACTGATGGATGCTTATTTAGAATGCAGGTTGCTTATTGAGCAGCTGGCAGAAGTAAA
CCCTGTTCATCTGAATGACGATGCGAGATTGGCGTTTTGGATCAATCTGTACAACGCCTT
GTTGATGCACGTACGGTGAATTGACAGACTCGCTTTAGTTGTGTGGCCTTTCTGGTTATG
GCGATAGGCTTGATTGATGGTTTGACGCGAGACTTTGATGGTGCTTTATTCCTTTATTTA
CAGGCTTATCTTGCCTACGGTGTTCCACGAAGTGACATGAAACTGTTTTCACTAATGCAA
AAGGTTTGCTCGAAAACTTCTAGATTCTTGTTCATCAAAACTACTATCCATCCAACTATT
TCCACTCTTCCATTCTTTGTGATGCTTTATTTCTAACATTGTTGCAATCATATTATTCTA
CTAGGCTGCGTATACAATTGGAGGGAATTCGTTCAGTGCGGCATTCATCGAGTATATTAT
TTTGAAGATGAAACCGCCGAATCACAGGCCACAGATGGTATGTGAGCTGCAGTGCATCTT
GACGACAAATCTGCTTGTTTGTTCATGAATGCAAACTGATGATAGTTTCTCCTGTGTTTT
GCTGAAGGCTCTGCTTCTCGCCCTTCAGAAGATAAAGGCACCTGAGGACCAGAAAAAGTT
CTGCATTTCGACGCCGGAACCACTTCTGACATTTGCCCTCAGCTGTGGGATGTATTCTTC
GCCTGCAGTAAGTTTGGATCACTCATTTTATGGCTTTTGATATGAAATGCAGCACTACCA
TTTTGCAACGCTTTTGTAATTATAACTGACGATTGTTTATCACTGCAGGTGAAGATATAC
ACATCCAGCAACGTAAGGGAAGAGCTTCAGGATGCGCAGCGTGATTTCATCCGAGCATCG
GTGGGAGTAAGCCGCAAGGGGAAGCTTCTGATCCCCAAAATGCTGCACTGTTTCGCGCGA
GGGTTCGTCGACGACAACAGCTTCCCTATCTGGATATCGCATTTTCTGCCTCAGCAGCAG
GCCACATTCGTCGAGCACTGTGTGTCTCAGAGGCGGCAAAGTCTCCTCGGCACCCGGACT
TTCGGCATCATCCCGTTCGACTCCCGGTTCCGATACCTCTTCCTGCCTGACATGGGATCA
TTGAACTGAGTGGTAAGATAAGATAATGTCCAACATTTAAAATTTGCATTCTGACTACTT
GTGCAACGGCATGTGTATTTCCATGTACTGAATATCCGTGTGTTGTAACAGTCGAATCAT
CAGGTCAGAGGTGCAAGGAAGCCCTATATCGTCGGTGCCGAACCGAGCTGTTTCGGCGTG
TGCTCGACCAGGTCTCGGATCACACAGGTGCACATCCAGTGACCATCGGGTCTGCTACGA
CACTGAACCAGTGCGCAACGGCCGGCTGGATTAAAAGACCGGTGTCCTCCTCCGATGTCA
GATAAATCTTGAGCACGTCAGCTGGATTAATTGGCTAGTTTGCCTCGACTTCTTGTCGAA
TTCAGCGCAAAATGTTGTACTCCCTCTGTACCATAATACTTGTTGTTGGAGAGAACTAGT
CTAGTTTTCCCCAACAACAAGTATTTAGGAACGGAGGGAGTATATGATAGTGGTTGATGT
CTAACTAGCTAGCAAATAAAATGAAGGCGATCGTTATGAAGGTGTTGTATGTCTACTGAC
GACATGTATGTGGCAAAATGTATTGTGTGCCTGCAGCTCTGATCTGCGGTACTTATGATA
TACTAGTACAATTTATAAGCAAGAAAGAAAACCTAGATTGTGTCAACACTGGACCAGAGC
TGAATTCGACAGGAATCCTCAACTTGTCGTGGAATCCATTGAAAGATGCTGTATATGAGG
CAGAATAATATATAATTCAATTTATCGCTTGAAGGCATTCATTCATGTTGTATCTCTGTT
GCTCATGGTCCTGACGATTCAAAAAAATGTACTGTATTGTATTGCTCTGCCTGCTGTGTC
ATGCACAGCTATAAGCAAGTGGTAGAAGTTAAAGAAATTCCATTACGATGCATGCTCCCT
CCCTACGATGACCTCTTCACCGCATGATCGCCGGTGGTTTTCTTTCGGAATTTCCGCTGT
GCCATGTGAGAAATGCAGTCCCGGTGTGGCCCTGAACTTGCCCGCCGCTCCTCCCGGGCA
GGAGCAGAGTTTCGTTCGTTGGTCTCATGGCCCGTCCTCGCCGTCCTTGATGAGGTTGCA
GATGTCCGAGCACTCTGTCAGGCTGCACAGAATTAAGGCACGTGAGTACAACTGGATTAG
GTTGTTGTTGGAGTGGCGCGGCGTGGTCGATTATTTGATTTACGTACCAGTAGAGGCGGC
TGCGGAACTGCTCCTTGAAGACGACGAGGGGCCGCCGGACGTTGAGCGGCCCCTCGCCGC
CGCGGATGCAGGTGGCGACGCACTTGGAGGTGCACTGCAGCGCCTTAGCCGACTTCGGGT
GCTTGATCCTCACCTGCGCCTTGTCGTCCCCTGCAACCCCGATCACCTCCGGCATCAATT
AATAACACCTGCTCTGCGCAACCGGCGGTAGCCGTGGGTCGGTGCGTACCGGAGAGCGTG
GGCGGGATGTTGGAGAAGTTCTCCGACTGCGGCGGCGGCGTGGAGAGGATGGCGGCCGCC
AGCGCGAACGCTACCACGGCCGGCGCCTGCCCCGACATCCCCCGTGCGACACGACGGCGC
GGCTGGCTCGTCCGCAGCGTAGGCGAGGAGGACACCGGCGCCGTGGCCGGCCTTGTGTCG
CTCGTGGTCTCTGCTCGCTCTGGTTAGCCACTCAGCCTCGCTGCGCTCTGTGTGGTCAAG
GCGCGTCGCCTTTTTTTTTTGACCCTCTTATATGGCAAACGTTCGCCGGGAGACAGTTTT
AGTTATGTGGGGTTGGCCATTTCTTAAGAACAACAATGACATTTTCTGGGAATAAGAAAG
TTTTGAGAATCTGTCATTGTTAGGGCAACTCCATTTTTTACCGGCGAGAAAAAATATATT
AAACATAATTCTCTCCTTAATAATAATAATAATAATAAAGCAAATACGGTTTCTGACCGT
CCGTCGTGACATTTTTGTGAAAAGTCCCTCCGTTTTCACTTAATCAATCCACGGTCTTTT
CTTAAGTGAAGAAAACGTTTCGTTGTGCCACTTTTACAAAAAAAGGCCTCGAAGTTTCCT
GGAATCAACCCGCAGTCCGAATTTAAGTCAGGAAACAAATTGTTTTTTGCATTGTTCAGA
AAACCCCCTGATATTTGAGGTAATCAACCTGCACTCCGTATTTTAACAAAAAAACCTAAC
TTTTCAGTTAATCAATTCAAATTTAATCTAAAACAAAATTATCCATATCTTTTAAACCGT
AACTCTGATTTTAACATGCTATATATGAAATTTGATTAAAAAAATATGTACAATTTAAAT
AGGATGTTATTTTCAGCTCTTGAATACTTCTTAAATATTATTTTTGGTGCAAACTTAATC
TGTAGTGTACGGTCTTTTTTTTTCTCTTTTTCCGGCGATGATACGAATTGCGAGAAACAT
CCATTAAAATAAACCAAACTGAGAGGGGAAAAACATCGTTAACCACACATGCTCACCTTT
GAAAAACCTCATGGGGAGAAACAACATGTTTTTCATCTTATTTCGAGTGACTGTACATTC
AGACGCGTTTTTGTTGTGTGAGCACTAAAGCCATCGTCGGCACCACAAATGTGATGTCAT
GTGAAAATAAATTGGGTTTAGAGCGTGTGTTATTTTCACTTCCGTTGCAACGCACGGGCT
CTTTTGCTATAAACAATAAAAGCCGACCACGAAGGCTGGCGATAATCCACGCGTCGCATC
CGTATTACATTAATTTAAAAAAAACTAAAATTGCGTCCATGCAACCCTAGGCGGTGTCGT
CGCCGTCGTCGGGGCAGGTGAGGTCGACCAGCGTTGTCGCAGGGCCGGCCGAGGGGAACG
CCGAGTTCTAGAGTGCGGCTACTTGCGCCTCCGTTGTCTACCCCGCCGACGCGGGCTGTG
GTGGTGGTGATAGCAGCGCAGCTGCGTGAGCACACTCTTCCTCCGCCTCCCATCGCTCCT
CCTCCTCCTGCTTCTCCAGCTCCATGAGCCGTAGGCCTTCGGCGCGCTCCGCCTGCAGGT
GCACCGACCTCCAGTGCTCGAGGTAGGCCTGCTCCTCTGCGGGGTCGCGCCCAGCCAGAT
GG