morexGenes - Barley RNA-seq Database

Contig contig_37643

Source Contig contig_37643

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_37643 (6385 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location

Predicted Genes from contig_37643

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_52594	1	290 bp	MLOC_52594.1	Available	Available	None
MLOC_52595	1	2253 bp	MLOC_52595.1	Available	Available	LOC_Os03g06070.1, FRAME:-3, EVALUE:6e-53, 13103.m00662 protein la domain containing protein, putative, expressed

CDS Structure of MLOC_52594

CDS Structure of MLOC_52595

Contig Sequence (6385 bp)

>contig_37643 6385 assembly3_WGSMorex_rbca.fasta
GTTCCATTGCAATGATGCCCTCGAAGTTGAGCTGCATGGAATCAAAGAAGGGCTCCAGCT
AGCTACGGAGCATTCTCAAGCTACACTTATCCTTCAATCCGACTGTGCAGAGGCAATCAA
GATGATTGTCAATGATTCCCCCAACAGATCAGCTTATGGACACTTGGTGGCGGATATCAG
GGAGTATATGAACATTAGGGCTTTTGTTCCTCTCAAAATTCTCAGAGAACAGAATAGGGT
TGCACATTGTNNNNNGAACTTTGGTAGATGTGGTGATAGCACAGCCTACTGGTTGGGGCG
TCCACCTCCATGTATCCGTAATTTAGTCGCTGATGATTGTAACACTATCAATATGGAATA
AAAATCCCTATGTTGTCTCGCAAAAAAAAAAAGATCCTAATGTTGGTCTCAGTTCTCAAA
CTACTGTTGCGCTGCTCGCTGAAATGCACTTTGAGCACATTTCTTTTATCACCATTGTGT
TGTCAACTAGAGCTATCTATCTTCTGCTGATCTTTCTTATGATCTCTATGGCATATGCTT
GTCTAGGTATGACGGGATGGCCTATGGCAGTAAGTTATTCTCTTCACTGGAGGAGAGGCA
CTTCGCCGCATTTAGCAAGCTGATCATCATCGTCCTCAATCCCTTGTCATACATAGCTGC
CAGTCATCGTTTGAAAGCCGTATCACTGTGGTATTGTACTCCATATTATTGTAGATCATT
GCAGTATTGTACGTCTGCTAAACAATGTTTCTTGGTTCATGAAAACTTTCGCGCTGAGAA
TTATTCCAAGTTTCTGATCGACACGCTAAAATTGTTGTGCTCGTGTTGTGAAATGATGAC
TCGCAAATCTCAACCATAGGTCCATCGGCTTATTGCTAAGAACCACACGGCTTAGTTGCT
CAGAAATGGAAGTACGCAAACGAAAGTGCTACCGTGAACCCAAGCTCACATGAAATTGAG
TTAACAGTAAATTCCAACAAAAAGATATTATTTTTTTAAGATGTGTTTTTTTTTACAAGA
AACATTGATGCTTTTTTTTACACGCTTGCAAATTTGGAGCAGATTTATTTTGCCCACACC
CCTAAAAATCTACACGTGTATGGAGAAAACATCAATGCTTCTTGCCAAACAAAATAGAAT
GTTTTGTGCGTCCGGACTTATGTGAGCTCGAGCTCACAAACTCCATGTCCAATCCGCAAA
CAGTTAGAGCAACTTCAACGGATCGATCCAAACAGGCAGCGATTTTGTCCGTTTTTCGTT
CGTTTGGGTCGTTTGGCCTGTCTGTATCCCTTTTTTTAAATGGATCAATACATACACTCA
ATGGAAAGCAAATGAACAGATGACAATAGAATAATACTCCCTCCGTTCAGAAATACTTGT
CCTAAAAATGCATGTATCTAGACATATTTTAGTTATAGATACATTTATTTTATTCATTTC
TAGGACAAATATTTCCGGACGGAGGGAGTAGAAGAAAGATGAATGAGAGTAGATCGACGA
ATTAAATAAACAAACAGAAATGGGTGGATGGCTGTGTAACAAATGGGTCAGACCAGCCAC
ACGCGGACATCGAAAGGGCGCGCCTCCGCTTCGCGTTCGTACCGATCCATTTTAGTCCGA
AATTTGGCGTTCGTGCCGATCTATTTTAGTCTGAAATTTGAGCTAGAAATGGATCAACGC
AGATGCATTTTAGCAATGGATCCGGTGATTTAATGAAGTCCGTTTCGGTGATCAGCGTTG
GAGTTGTCTTAAGTTGCTCCCAACAGATGTTGGAGGCAAACAGTTGTATGCCGAAATAGA
TGGAGGTTGGCTTTAGCAACATGCTGACACAACTGTGGAGAATTATCAGTTTATCACCGA
GAGTAAACATAATATAATCAACCAATTCAAATCAGCACAAACACTACACAAGATGAATAT
AGTCTCAACAGGTATACAGTGTATATATATATATATATATATGGTCTCAACAGGTCTGAA
TGGTACCATCCATAAAGTCTGAGATAACAGAGTATACACAGAGAACAGACTGTCCACTAG
AGCAGAAACACGACATAATAACACACATCTCCGAAAAAGCAAAAGCTCAACCATGAAAAA
TTCAGAAGTCACGCATATCACTTACTGTTCTTTTTTTAATATATATAGTTTTTAGTTTTT
AGTTTTTTTGTTTTTTTTTTGGTATGTCCATCTATATTTTCTTTTTTTTATGCTCTTTTT
TTCAAACAAACAGTATCTTCATTCCTCGTCCGAAGTACCCCTGAGTAGAAGAGTTGAGTG
TGCCGTAACCAGTGAAAACTCGGCATATCTTTGTTGTGTATCAAAAGGTATCGCTCCTGA
GTAAACTTCTCTCGGTCTGCTGCCCAAAAATGGGTCCACTGCCATTGCTGTGTAGTCCTC
TGAAGGTAGGTGCTTGATAGCCTATACTAACTGAAGTTGCTGATCTAGTAAGGAGAGCTT
CACGAGGATAGTATGTCCCCTCAAGTCCAACAGATTGAAACTGAGACGCCAATGAATCAA
TGTTGGATGTCACGGGGGAACGTGAACCAGAAAAAATTCCAGCAGAATAATTTGATCTTG
GAAGCAACCAAACCTCCCATCTTACACGCCTCCGTATTTTGTCACCCTGACAAAGCAGAA
AAAAACTGAGCCTTTCATCACCGAAAAGTGTGGTGTGACTGGTAGTGCGTCACCAACGGA
ATATTTAGATAATAAAGAGTAGTCATATTCAGGTTTTGTTTTCACCTATGATAAATACAG
AGCAAAAGGGAGCATGTGACGTTATACATGTATGACTGAGGAAAGCAGCAAGTGAATTGG
AATGTGACTGGTTCAAGCGACCTTCATTGCAAGTAGTTTTACTTCATAAGAATTGTAGCA
ATAAGCTGCCAATTGCAGTAGTGTTAGAAAGTGCAATCTGACATGCCAAATTGCGGCCTA
GAGTCATAATTTTCTTGTTAACCAAAGGAACTTTGCAAGTGAAGGTGTGGTGTTCTATTC
ATGTCAAGAAAAATAAAAAATAAAAAGACAGTCTAGTGAAATATGAGACCCTCTAGAATC
ATAAAGTGCTATAAGCAATCGCTTCAAGATCTCATTGTGTGGTTGACCATCAAGGATACT
AATAGAACTCCTCAAATAAACAAGAAGGATAATCTGGACATAAACAGGTCATGCACTCTA
ATATTCTTACCTAATTTTCTGTAACCAAAGGTGGACTTACAAGCTATGTCCCGCTGGTAG
TGCATAAAGAGTGACGTAGTAGTCCATAATAGGAGATACAAACTTTTTGAAATGAATCTA
AATCAAGTTTTTGTGAAGATTGTATTTGTGAAGATTATAGACCAAGTTTAGCATTGTTGA
TGGTAAGTTCAGAAAGAGAAGCCATTTTCTTTGGTACAAAAGCATATATCTTCAGCATGG
CAAGATACTTTATGTATAACATCAACCAAACAAGTTTAGTTTTTTTAGTAGAAGTTACAT
TATGGCACATGATGTCAGCATTTGATTACCTGTACTTCCACCACAGTAGACTGCATGACT
GTATCCAAGATAAACTGTAAGCCATTGGTCAAGTTTTTGACTTGCCCAATACGATATAGG
AGCCTTTGGACCTGTGCAAAACAATTTAGTTGAGAAATCTGTCCTTTCTTTCTAAAAGAA
AAGGCAAAATATATTTCTGAATATTCTGGGTAGAGTTGTCTCATTTCATTATGCTCAGAA
AGAAACACCGTCTTTACTAGGCAATACCCCTTTCATATAGCAACAGATGTAACATTCAAA
AACAAAAGGATATAACAACAGATGTACAAATACAATTTCTCACAGCTATCAATGCTTAAT
CATGTATAATGTAGAATAAGGGCAAACCATCATCCACACAATACACCTGGCAGCTACAAA
ACAAAATAGAGTAGCAGAAAAAAGAAATGCCCCCTTTCGAACTATAAAGCTCCAAATATT
TTAACGAACCCTTTTTAGCTCTACAATGAAAGATTGTGCAAGCCACTTTCAGACTAGTTG
GTGTATGGTAAGTGTCACATGCTAGGGTTGGTAAGGATCTGAGGACCAAGGAGTGTAGCA
ATGGGGGTATGGCTTCAAGGAGTGAATCTAGACCCATGGCTCCGGGGATGAGAGGGAGCA
AAGGTTGGGGACAGGGATTATATTTTTACTAGTTGACAATTCTCATTGATTGCATAATAA
CATGGATAGAAAAGTCTGACTTGGTGCTGGAGAAGAGGATACCTAGTTTCCTAACAAATC
ATATTCATACATTCCCAACTAAATCAATCTCTTACCTTGCAAGACTGTAATTAGTGAAAA
GAAACACAAGATCATTCACTTGGCAATCTTATGGGGCATAACACTATCTTGCTTGCCTCG
ACTATTAAAAATAAATGCACATCCAGGACAGAATGCCGCAAAAATTCACAACATTTAAGC
AAACAAATGACTAATCCAGAAGACAAGCATAACAGACAATAAGAAGTTTTCAGGTCAACA
TGACAAGAAGATGAGAGACATGGAGATGGTATTCTGGATGCACAAGAGGAAAGGCAACCA
TTCTCAACCTTGGGAATAAAAACTAGGAATCTAAACAAACAAAATCTACTGATGTCTGCA
CCAGTTTTTGCTAGCAGTATGCGACTTCAAGTTTATTGAGTACAACATGAGAAAGCTTAA
TCACATCAAACAGTCATTGCTGACAAGAGAGGGAAAAAATGAATAATACTCCCACCGGTA
CCCTAATAGTTGTCATTTTAGATCTCTATATGCTGACAACTAATCTGCCATGCAATATTT
ATATTGTTGAACCAGTATGGGCCTGTCCATTACTACTCTAGCCCATAGGGCCCAAGCCCA
TGTGGAGGCTGACCCAGAAGAGGGCGAGCGCCGCAATACACGACAACCAGCTACAGGAAG
GCAAGCTCTCAAAATTCAGTATGGTATCAGGTCAGGGGTAGTCGCGCCGGCCGCGGACCT
GGACAACAGCGGTGCAGCTGCGCGCGGCGATGTGACTGGAGGAGGTCGACAGCCGCGGGC
GGAGCTGCTCTCTCCCTTGAAGAGCCGTGTGCTCGAGGAACAGCATGCACGTGAGCGGCG
CTGCGGCGGGTGCTCATGGCGCGGGAGCTAACCACACTGCCAGCGGAAAAGAAAGCAGTG
AGTTGTAAGTTCATCTATACTATGAAGCAGAATCCTAAGGGGAAGCTGGAACGGTATAAG
GCCAGATTGGTCGCCAAAGGATATAGTCAAACTTATTTAATATCATAAGAGCGTCCAAGT
CGTCCGCCTAGACGCCAATCTGCCCGCCTTAGACAAATCTGGACGCCTCAGGCAGGAGCA
GGGGCAGGGGCTTCAGGCGGGAAACAAGTCACTGGCAGGAACAAAAGGACGGGAACCAGA
AGCTCTCGTGTGCCAACAGTTACGAGCAGGGGGAATCAGAGAGATCGAACCAGTTTTCCC
CCACCTGGACCTTTGGTGCGGCTGGAGTTGCAGATCTAATCTGCCCCCACATCCTCTCTC
GCAGCTTGTCCCCCTCCTCTCCTGCAGCTTCACCCTCCTCTCCAGGACAACATTTGTTTT
ACCTCATCCCCCTACCAAATTCTACTTTATTCTGCTGCTTAAAACCCTCTTAAGGAATCG
CCTGTGAGAGTCTGGCTTAATAGGAATGATAGACTACTCATATCAACAAGGAATTCCTTC
TTTTCCGAGAGCCCACTCAAAAAGAACTCAAAAGTTAAGCGTGCTTGGCTTGGGGCAATT
CTAGGATGGGTGACTGACCGGGAAGTTGGTCCCAGGTGCGCACAAGTGAGGACAAAGTGC
AAAGGAAAAATTAGTGTTGATCTGTGGGGCCAGTCTAGATCCCTCCAAGCGTAACGGTAT
GTTACAATTGGTATCAAAGCCGACCCTTGCAGTTACACGGGGATGTGCGGGTCGGGTGCG
CAGGCATGTGTGCATGGCGCGTGTGGCCTGTTGTGGCACACGGCATGGCACATGTGCCGG
ACTGGACACACATACGTGTGCCAAGAGGGAATATTCTTGATGGGCTGACGAGGACATCGG
TTCCTTTGAGTGGGGTTGCATGTGAGAGCCTGGCTTAATAGGAATGATAGACGACTCGTA
TCAATAAGGAATTCCTTCTTTTCCGAGAACCCACTCGAAAAGAACTCCAAAGTTAAGCGT
GCTTGGCTTGGAGCAATTCTAGGATGGGTGACCGACCTTGTGCATGAGTGATGACAAAGT
GCACAGGAAAGACTAGTGTTGGTCTATGGGGCCAGTCTAGATCCCTCCAGGCGTAACGGC
GTGTTACACTTGCCTTATGCCTAAGCGCTTAGGCGATGAGGCGCCCACCAACGTCTTGCT
TCGCCTCAAAGAGTGGACATCTTGA