Map Locations of contig_37618 (7366 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_37618

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_52557 2 3482 bp AK369530 Available Available None





CDS Structure of MLOC_52557






Contig Sequence (7366 bp)

>contig_37618 7366 assembly3_WGSMorex_rbca.fasta
AGCCCGTCCCAACCGCAGCCGCCGTTCCCGCTCCCCATCCACCGGCCGCGCCCGCTCAGC
AGAAGCCAGCCGACGATGAGCCCGCCGTCAAGGTACGCACCATCCGTCCGTCGTCCGTCC
GCTTCTTCCTCTCCGCGGGTCGGTCGGTCGCGGTTACGCTTACGGATTTCGCGGGGTGTG
GCAGGTCGTGGTGCGGGTGCGGCCGGCGGTGAGCCTGCCGGTGGACGGCAAGGACCTCTT
CTTCGTGCGCAGGACCTCCCCCGACTCCATCGCCGTCGGCGACCGGGCCTTCGCCGTCGA
CGGCTTCCTCGACGACAGGGCCTCCCAGGTAACCTCCGCTTCCAGTTGCTCCGCCCGGCC
CGTCAGCCATCTCATACATACCGAAGCAGCTTGCTTTGCTTTGGTGGACCTTCGCCCGTA
ATCCGTGAGGCGTATTCTTATGGATGGATGATGGATGATGCTGAATTGGTGATTGGCAGG
AGGATGTGTTCCAACAGGTGGGCGTGCCCATGATCCACAGCGCCCTCGCCGGATTCAACA
CCTCCCTCGTCTGCTACGGCCAGGTACTGCGATTTCTTCTGTGCTGTCTTCTCTGTTCCT
GCTGCTGCTGCTGACGCCTTTGCTCGTGGATTCATTCATACCAGAGTGGCACAGGCAAGA
CATACACCATGTGGGGGCCCCTCGCCGCCATGTTCGACAACCGATCCGACCGGGCCGACC
GGGGAGTCGTGCCTCGTTTCTTCCGTAGCCTCTTCTCCCAAATCCAAGGCGTAAGACCCC
TTTCTTTATCTCTAGTTCCCGGCAATTTTCAGTTAAGCTGCTTCGATTCTCTTGCTGAAT
TATTACTCCTGCTGCAGAACCAAGAGAGCTCCCCGGAGAAGCACACAAGTTACCAGTGCC
GGTGCTCCTTTCTCGAGGTGCTTACTTAGAAAACCGATGAATAATGCATCTTCATATATG
GTTTACCACAACTGAAACGGTCTGAACAATTCCTCCAGGATCGAGAACTGAACCCGGAAC
TGATTTTTTTTCATTTCTTTGCTTTCTAATTTCTTGCAGGTATTTAATGAGCAGATCAAT
GACCTGCTCGATCCATCTCAACGTAATCTTCAGGTATATTCTTACTCAAGAAAGTTACAT
TGAACCGTGCACTTGTCCTGGTTTATACAGATGTCTTACCCAACTCCATCCTTTTAGATA
AGAGAGACCACTGGCAATGGTATCCATGTTGAGAACTTGACCGAGGAGTATGTATCGACA
GTCGAGGATGTAAATCAGATCTTGATGAAGGTATTGTAAGAGGCCTAACCAATACTTATA
ACTATTCAATTATGTGTATGCCTAGTTTTCAGATAAACCAATAGGATAACTGAAGCTCGT
GCCTAGTTAGTGTGACAAGGAGTAGCACACTGTGATCTTTTTCTTACAAAGAAGGTTAAA
AAAATGTCAAAATACTTGATTCGATGATTAAAAAATATATTTGATGCATAGTTTTCAGAG
AAACCAATAGGATAATAACTGAAGCTCATGTCTAGTTAGGAGGTGTTTGGTTCAGAAACT
GTAACGTAAATGGTAATGGAATCAGAATACGCCAGTAAAGGAAACCGTTTCCGGAGCAGG
GTGGGCGGTATCGGCGGTGAGTAGTGATGTAATTTGATTGCACGGAAACGGATTACAGCC
CATGTGGTCCAAACACAAGTAACGTTTTCAAGTTACGGTGTAATCAGGTTACGGGCCAAA
ATTGACGAACCAAACACCTTTTGAGTTACAGGGAATAGCGCACCGTGATTTTTCTTTTCC
AAGAAGAAAGTTCAAATTGGTGAAATAGTTGATTCAGTGATTAAAAAATATATGTGATGC
AATCTTCTAGGCACTGTAGTGAGAATTTTTTCTTTCCATCTAGATAACCTTGTAACGTTG
TTTGCACAGACTATTATGTTCACACTACAGAGATTATGTTAGAGCTACCCAAAGGCTTGT
GTTGAAAACCAGCTGCAGTTACCATGTGTTCATGTTCAGATAGAAGTTCATAATATTTGA
TTTTCACCATGCTCTCTCAGAATCATTACTATTTTGCTGCATTTGGAGTGATACATACAA
TAACCATAATGTGCGTCAGTCTACCAGTGTCCTTCGCCTGTTGCTAGTTATCTTGATACC
AAAGTTTTTCAAGCATACATTTCTTGGTTAGCATGAGTTTCTTCCTTTTGCAGGGCCTAT
CAAAAAGAAAAATTGGCGCAGATAGTATGAACTTAAAAAATTCACGTTCTCACGTGATAT
TCACTTGTGTAATTGAAGCTTGGAGCAAGGTAAACATTCTATTGTTCCCGTCATAAGACT
TTATGCAAATTTGTTTTCTTCTGTCGTGTATTTTTGTTGCTTGTTCTCCATTTTGCACTT
TAGGGTTTATTCTAATCTAATTTGGCTGCAAGTATTGTAATGATCATGTATTCCCATCAG
TGCTAGAGCACTTGAGAAATCAATATCCTGCTAGTTCATTCTACTCTAATTTGAATTGTC
TGCCAAATGATGTGGTGATTTATCTTACTTCATTTTGAATAGTCTACTGATAAGAGGATA
TAATTAGTGATTTATCTTACTTTATTCAACTAATATTGCAGGATTTGTCATCAAATGGCT
TTAGTAGTTCAAAAACTAGCAAAATTACCTTTGTTGATCTAGCTGGTGTTGATATTGATG
AAAGTGATGGTGCTGGAAAGAACATTACACGAGAAGAAAGACACGTTAAAAAGTCTCTCT
CAAGCCTCGGGTATGTTTTTTTTACCGATAAGTAAATAATTATTTTTCCTAACGGGATTG
CATGATTGATATTTTTGTTACCATACATATTTACTGATCTTTCTTGTAATAAAAACATTC
GGATTGTGTGGGTGACATTTTTGCAACTATTGACACTAACACACCATTGCCTCTTTACTA
ATTTATCTTTCCTTTAACAAGAATATAGAAAGGCAGATACCTCATGTTTACGGACTGTGA
TTTCAGGAAACTAGTCAATATTCTTTCAGAAGAACCAAAGCCCCAGGAAGATGAATTGTC
ATACAGCCAGTCCCGTTTGACACATGTGCTGAAGGATACACTAGGTGGCAATTCAAGGGC
TACATTTTTGTGCTCCATTTCTTCAGAGCACAGGTATGTTTGGTTCTGGAATTTTCATGT
GCCCCTTACATTTTCTTGAGCACTTTATCGTTAGGGGGTAAGCTACTGTTTCTTAAATTA
GCCTGTTCCTCTGAAATGCAGATATAGGTCTGAGACTTTAAGCACACTAAGGTTTGGTGA
GCGAGCAAAGCTCATGCCAAACAAGGCTGTGGTAAATGAGATATCAGAAGATGATGTTAA
TGGTCTGAGTGATCAGATCCGTCAGCTCAAGGTATTACAGGAGCACAGTAGAGATTAGAC
ACATGTGGCAACCGTTTACGGAAATTTGCTAATTGTGTTTTTATCGCCTGCAGGATGAGC
TTGTAAGAACCAAGTCTGGAGAGCACGCAACATCTGAGACTGGATACTTCAATGCACAAA
TTGCTCGAGCAAGCTTGCACACTTTGCGAGTGAGCCTCAACCGCTCTATAATTTTGCCTC
CTATAGAAGTTGAAGCGGAGGATGAAATGGATGTTGATGAAGACGATGTACATGAACTAC
GTGATCAAATTAGCAAGATTCATTCTTCATCTGAAGACACTCTGGATGACTTCATGGATG
CAGAGAGTGGAGAGGACAGTCCTCGCTTGGAGGAAAATCCAAGACCATGGGAACATGATG
ATCAGGTTGTCATAGATGACAGTGAAGGTCCACTTCAGGAAGAGCCCCAGAAAATGCACA
GCAATACAAGTGCTGATCATGACCAGGTTTCTGACAGGAAATCTGTTCTATCAATTAATG
CTTCCGAACAGCTGAGCCCAATCCAAGATGCAATGTTCTGCTCTTCTCCAAAGATTCACA
AGGCAAGAAAGAGCATTGCCTCACCAGGGTTCTCTCCAAGCAAGCTAAGTGAATCCAGCC
CAGGAGAAGCCGATTTGGAAACGTATAGGAAGAGTGCAGTGCGTTCCTCCTTACAATCGA
GCAAGCTTAGTCCCACTGACTCGTTGGCTGCAAGTCTCCAACGGGGCCTGCACATTATAG
AGTACCATCAGCAGAATCCTCCAGCCCCACGAAAATCGTTCGTTGGCCTTTCGTTTGATC
ATTTCGCACTGAACCCCCGCCAGTCAGCAAAAGCAAGTTCAGCCCTTCAGGCATTACCGG
AGGGGGACGCCAGTTCGGTTTCTACCATTTGTTCATCCTGCAAGAAAGCAATGGATACAA
ATGATGACCTTTCAGAGGACATAAACTCAGAGAAGCAGATTGTAACGGCAACTGCTGTCA
CATCCAATGACTTGGCTAATGCTTCCCTCAAGGTATGCTATTTTGTTGGCATAATTCCTA
CTTTTCTCATATCTTGGCACCTGCTTACACATTTGTACTCTTCCAGGACGGTAACATCTC
TTCGACTACTGACTCGAAGAGAGTGGCTGAGCTCGAAGCTGTATGTGAAGAACAGGCAGC
TAAGATCAAGGAACTGAGCAACTTGGTATGTTGTGCGTGTAAATTTCTTGGGTACTTGGG
ATAATTATTTCCATTCCTTGACGATTTTTCTCTGCTCAAATGCAGATTGAGCAACAAAAG
AAGGGATCAGAAGACGGTGAACAAACCGCTGAAGATAAGATTGCTGAACAATGTGAGGAT
AGCAGGACGCCACTCGATGTGTATGAGAGGGAAGCACTTGAAGGCGAAATCCAGAAGCTG
AAGGATCAAGTGCAACTTCTCACAGACGGATCAACAGCAAGCGACAGCCTTCTGGACCAG
ATAAGGAACGGCAGCACGGACCAGGAATACGAGCTGGAGAAAGAGAGGCAGAAATGGATG
GAGTCCGAGAGCAAGTGGATATCTCTCACCGAGGAGCTGAGGATGGACCTGGAGTCGAGC
CGGAAGCACGCGGAGAAGACGGAGGCGGAGCTCCACGAGGAGAAGAAATGCACGGAGGAG
CTGGACGACGCCCTCCAGCGGGCCATCTACGGCCACGCCAGGATCATCGAGCACTACGTG
GAGCTCCAGGAGCTGTACGACGACCTCCTCGAGCGGCACCGCGGCGTCATGGGTGGCATC
GCGGAGGTGAAGCGGGCGGCTGCCAGGGCTGGCAAGAAAGGCTGCGGGACGGCCTTCGCC
GCCGCCCTTGCCGCCGAGCTCTCCACGGTGAGGATCGACCGGGAGAAGGAGCGGGCGCAG
CTCAAGGAGCAGAACCGGAGGCTCCGCGTCCAGCTCCGGGACACGGCCGAGGCGGTGCAT
GCCGCCGGCGAGCTGCTCGTGAGGCTCAGAGAAGCCGAGGAGGCGTCCACTCAAGAGAAG
GTCCGGCCGGACGGTTCACAGCAGCAAGCAGAACTTAGCTACTACGTACAACCGTTTTGG
TGGTTCGAAATGAGTTGAAAGAAGCTCATTTTTTTGGCTTGTGTTTGTTTTGCAGGAGAG
GAGTGCCGCCATGCTGCAGGAGAACCAGAAGCTGAAGAAGCAGCTGGAGAAGACGAGGAA
GAAGCACGAGGTGGAGATCGAGACGATGAAGCACTACCTGGCCGAGAGCCGGCTGCCGGA
GTCGGCCCTGGAGGGATTCTACCGCCACGAGAGCGGCGAGGATGCTCATGCCCATGCTCC
GTCCACCGCCGGCCACGACGACGATCAGTCCTGGCGAGCTGCGTTTAAGTCCGAATTCGA
ATGACTCCTTTGCCACCACCGGCGACGACGGTGACCACTCCTGACGAGCTGCTGCGTTTG
CCTCTAAATTGCTTGAATGATTGCTTGAGTAAGTCAACTGAGCCTGGTTGACAATTAGGA
AACAAGCGTTGATTCTTCGGTATTTCTTGATTTTTATACATGTCTATGATGATTCAGTGC
CCTCTGTTGGGGCAAAGCTTTGCCTTTTTTATGTATGATGATGACACTTTGTACTTTTAC
CCTGTGTGTATCATTTGATGGCTTTACTATGTCTATGGTTCATGTGTCTACGCACTACTG
GAATTTTCCTCTTTGCCGGGTGTTATGCTCTTTGCCGAGTGCATTATGTCAGACACTCGA
CAATAATATCCTTGCAGAGCATTTAACGTGAAACCCGGCAAACATGTACTTTGTCAAGTG
TCGTGAACAAAACGCTCGATAATACAACAAAACTCGTTAAACGTGACAAAAGGGCATGCG
TACTGAGTGTAGTGGACAAACCGAATGTCACACTGGACAAAAGGGCATCTTTATTGAGTG
TAGGGTAACACTCGGTAAAAAGTGGTATTCGCTAAACTGCATGATTTTTGTTGTAGATGT
TGCATACGATCTCGGATTAAGATGGTGCAGAAATCAAAGTTGTTTTTTGATGAGACAGGC
AACTAACATGTTGAGAACTTTTTCATTTTAGGTCATATTAGTTTCCCGAAAGTAATTCAA
AATTAAACTGCAAGTGTGTGATATCTCAATCATAAAAATTAGCAAAAAAAAATAGGTACA
CAAGTAGTCATTATATGGGAGAACCATTTAGATTTTTGAAAGATTCAACCCCTTGTGATG
AATAGCCATGCCGATCATTTTGACCATGTTTTGAAAAAAAAATGAAAGAAAAATGCAAGT
TTAAAATATGCAATCCTTTTGCATGGACTCCTTTTATGTGTACGAGTTGCGAGGAAAAAT
ACCAAACTTTCAAAAAAATAAACTCCTTCACAAAACGGGCTACCGTGTATGAACATTCAT
CGCTTTCAAGTTAAAGGACCAAGGTGACGGCCATATTCATTGCACAGTTTAGTATAGTAT
TCTAAAATTAGATACATAGGTGTGTCTTGATATTACAAACAACTAGTTAATTGCCCGTGC
GTTGCCACAGGAAAATACTTAGCATCATAGTATTTGTTTTATTTTCAATAATGTGCTAGC
AAATATGCCCCTATCTCACAACCACATGTCCATTAGATATGGATCATGAAGGCCAACATA
CTACAATGACAACACTTATCCGTTTGTTATACTACCAGAGATGCAAAGGTGTACAATGAT
ACTAAACCGTATGTAACAGGACATATACAAAAATTGAGAGAGGGGGTGTTAAGCTATAAC
TAAGATTACTTATTGAGGATTCTTACATCTTGCCCTGGAGACCCCCGACTAACACCAAAT
CAATTTGTCTCTCGCTCTGCTTCACCACTTCTATAGCAGTCTATAACCAGGACCACATGT
TGAGGATTATCAACCTTCTATTCCTAATGATCCCCTTTTTCACCATCACTACGAACTCCC
CGTCATTGATTCAATCATCTTAATCAAATGTATGATATATGTAGGA