Contig Data
morexGenes
Links



Map Locations of contig_37501 (5546 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_37501

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_52397 2 2613 bp AK250130.1 Available Available None





CDS Structure of MLOC_52397






Contig Sequence (5546 bp)

>contig_37501 5546 assembly3_WGSMorex_rbca.fasta
CTCCAATCGGTCGTCGGGGGTAAATGAGGGCGACCACTATTAGGACCCCCAAGTTCAACA
CGTGGCTGATTGATTGCGAGCTGGCCGGGAAATGTCCCGGCTCGTGGTCTCCCTGGCTCT
CATGGTGCTAGCACACGCACGGTGCCGCCTGCGGTACTAGCGGCGGACTGCTCGGTGACG
GTGATCGGGCAGTGCGGGATGGGGGCATGTGGTGCCGAGGGGTGCGGCACTGCGCCATCT
GCACCAAGTATCCTCCGTCTTCCTCCGGCCCAAAGGGAAGGAAACTGATACCGATATGAA
AGTACCCAGTGCCGAAACAGGATTCAGACATAGATGCACTGTTCTCAGCAATAAAAAGAA
AAAGATCAGTAACAAGGTCAAGGAGTCATGAATGAACTAGATCTCCCTCCGAAAAAGAAA
TAATCTGGGAAATAAAGATCTTTGACAGAGGGAGTGGTATTTTTGCACATTGACAATCAG
TTTCTGACGAAGTTGGCCACACACAAACTTCTCCGGTTCAAATACTATACACCTCCCAGT
GCCAAACCAAGCAAATCCTCACTGCAATGTGCATCTCCGTATCGTGTTCGGTTCAAATAC
CTACTAGTGGTAAAAACATCGTGTGCGTTGCAAGTTTGCAAGTGCGGCCAACATCCCCAG
CCGTGTGACATCCATTATCATCATCAACCAGAATTCAATTCCCCCCTCTCTGCCCCCCTC
CTCTCTCTCTCTCTCTGTACACGCTAGCAGCCTAAAGAACCAAGACGCGCTCCTCCCATG
GCGGCAGGCAAGCTTGCCGGCCGGAGCAGGTTGTGCTACCTTTCGGGTATGGAGTCCGGC
ACCGAGAACCTGTCGGAGCCGTCGTACTTGCTCGGCACCGGCGTGGTCCTCCTCGACTGC
CGCTTGGTCGCCACGATCACCTCCTCCGCGCCGGGGTCGTCGGCGACGTAGAACTTGTCG
ACATGGTCGCTCTTGAACACCGGGTGCAGGTACGAGTCCGCCAGGTACGACTTGAGGTCG
AAGTTGGGCTCCCTCGCGTGCTCCAGCGTGTCCTTCCTCATCGCCTCCTGCGCAAAACCA
GAAAAAACACCTTCAGGCCTTCAGCGGCGATGAGGACAAAGGAGGAATCAATCCGATGGC
AAGGAGATTGGGCGTAAATGTCTACCTGCAGCGGGTTCCTCACGAACGCAGGTTTGTACC
GGTGCGTGCAGTACTTGTGGAACCAAAAGGTTAGTATGGGAAGAACGAGAAGAACTGGCG
TCGCCTCCTCCAAACCCTTTGTGCTCAGTAGCCCAAGGAGAAGCAGCTGCGATGCAATCA
AGGCTACGATTATGCGTAGATGCACGTTGGGCCAGAACTGCGCACCACTCTCGTATCGTT
GATTGTAGACATTAATGATCTGAAACAATGTAGGATCAAGTGATAAGGAAACCAAACATT
CAGAGGTTCATCATTTCGACAACGAACATGCCAAAAATCTCAGAAAGTAGTAGGAAGAGC
TCTTTACCTGATGGCGGTAGACAACGTATCCCAACGCAAAGAACACCAGTATAAAAGGTA
GCAAGAGCGGTGTCACTGCAGCATACACAAGACCAAGCAAGAAATATAGCTGTATTCGAG
GCTCAGACCAGTAAAAACAGATACTGCCCGGATCCATTGCCTCTTCTCTGTCCTTCTCCG
TCTTGACCAAGAAAAAGTTTTTCAAGTGGTATAGTACAAATGCCCTTATTCTCAGTATTT
CAAGAGCTACACCAGTCCAACCATCGACCATTACGTATGTTATGAAAAATGTTGCCTTCA
TTGGTATGGCTACACCAATGATCCTTGGTATGCTGCAAAAGAAAAGCACATTAGACTCAC
TGGAGATAGCAATCACCGTTCGATTTAGGAATATGAAGAACAGATTTTCAGATGCATGGT
AAAATAAGTGTAGAACTGAAGATCAGTGCGCAATAACGAACACAAACGATAAGTACCAAC
AATGACCAGTATGTTAAGTAGAAAAAAAAACATCAGCAGCACCTAGCACAGGTACAGCGA
TGTTCCAGCCAAGTCCATGAGTTAGCTTTACCGCTGGGTACCACAACTGACCTAGTTCAT
TTGCCAATTTCAAGAAACTATATGTGTTGGTCTAATTTAAAGAAAGTTGAGCAGAACTCT
CATATATAGCATGCATTAAGTGTAATTGATGTTTGTTTCTAAGACATGAGTTCTCCATAA
GTCAAAGAAACTATATGTGTTGGTCTAATTTAAAGAAAGTTGAGCAGAACTCTCATATAT
ATCATGAATTAAGTGTAATTGATGTTTGTTTCTAAGACATGAATTCTCCATAATTCAAAG
AAGCTAGGCCAGGTCAAGGTTAACGAACTGTAACCAAATGCAAAACCATATTTTTTTGCC
AAAGAGGGTAACCACCATTCCATCTTGGTACCATTAAAGCCAAGGTGGACATTCTTCTTC
TAAGAATAATGTATCATGATGCACAGCCAACAAAGTTATCACTGACACTGCTAAATCTGT
TCAGGACTCCTACCGTAGTAAGGTGAAGTAAAAAATATCATCACCAGAAAATGCAACGTC
ATGCTTAGGAAAGATGAGATAAGATGCAACTGACCAAACCACACATGAGCTAAATGTTGC
AGCAAACTTATAAGTAATGTGGTATTTATACACCTTTTACTCTAAGTGCATAATTGGTAA
ATGTGTCTGTACGGGACATACTCATTAGCTGACGCATGGAGGTAGGTATTAAGCTGCTCC
AAAGCAGATCCTGTAACAATGCTCCCCAAAAATACATTGAAGAACAAGAATATAAAATAC
TTGGACGCAGTTCTTCGCTCTAGTGATGACTGTGATATCAATCCTTCAAACTGTGACATG
AACATCAGTATAGTTGGAAGCACTATGAGGAAGATCTTCAGAGCAAGTCCAGGAAGAAAC
CCTTGGATGAATGATTTAATGGTATCTCTGGAAAATAGTTGACAAGCAGAAATCAGAAGA
GACATCAATATATATGACATCTGATCAATATAAACTTTCACACTGATTCTACAGCGATGA
CGGAAAGGCTATGGAGACGCCACAAAACTGCGGAATAAAAAAGTTGTGAAAGTAGACTTA
CGCTTCAATTAAAGGTTTTAGAAATGGTAGTGCCTTCTCTATGCCTTCAAGATTTGCAAG
AGTCTGTACGAATGCTATTGGAATGACATAGAAGAAGTTGAGGAAGAAGAAGGCCACGCC
AATTATCAACCTCCTGACTGTCAGGGAGACAAAGGGAATAGATAGATTACTCCAGTAGAC
ATCACGAGGTTCTGGAGCCCATTCAGTCAGCCAAAGGGTTGGGTTGCTTGTTTGTTGTGT
CTGAGCACAAACAGCTGCACCCCACCGTGAACGAAAAGAAACAAAGGCTGCTGGCATAAT
TGACTTGGGATCCTTCATGACCTTTTTACGCTCTTCAACTTCCTGTGTATTGTCACGTGT
TAGACTATGTATTCTGACAGTTAGCTGCAAACAATAGATAACCTAACACTTAAAAAGAAC
AAAGAAAGATTAAAAATCTAGTAAAAACGACAACATGCATAGATGAATAGTACAAAGGTT
ACATGAATGCATATTTTGTAACTTACTTCCTTTCCTATCTTCTCAATCTCTGATTTGCAG
TGATCAATAGCATCCACTTCAGAACCAAAACATCCAAGAAAGCCAGTCTGTAATTTAAGT
CCAAAGATAGGCAAAGGAATTTAAAAAAAAAACAGACCCGAATACAATGAAAAAGCAATG
GGGTAACTATATTTGCAGACCAACCTTAGTTGTTGGCCTTTTGGATTTTCGCTCAAGCTT
GTTTTGGTAGTAATCAAGCCAATTCCGCATTTTCTTCTTCTTTTCAACCAGGTCAGCAAG
CTTATTTGCATTGTAAACTGTCTATAGAGCAACAAGACATAAAGATTAGTCCCCACATAA
ATCGTCTAAAAAGGGATTCAGCAAGAAAGTAAGGAATGCAATGTAAGGCTTAAACACAAA
AATTAGTTTAAGAAAAATCATAGTTACTCCCTCCGTTCCTAAATACAAGTCTTTTAAGAG
ATTCAACTATAGACTACATACGGAGCAAAANNNNNNNNNNNNNNNNNNAAAGTATGTCTA
TATACATCCGTACATAGTCTGTAGTGAAATTTCTTAAAAGACTTATANNTAGGAACGGAG
GGAGTATTATTTTTAACGAAGTAGCTAAACAACAAATTGTGAACCCAAATATCAGCATAT
GATTCATGTCGCGCCATAGCATATCAGTACCCTGGTGATTGCTTTGCACTGCACACTTCC
TTATATTTGGATTTGCAGATGATCAAACAGGAGATGTTCCAAAATTTAGTGATTACCTGA
TGTTTCAGATAATGATCAGGATGATTGACAAGGAAGAAATGTTCCACAAGCTCGCTAACT
GATTCATCAGGGTCTGGTGGTATGTTCCGTACAAGAACCTACAACAAAAATACATTGATG
ACTCAGAATCAAAACAATAACCAGAGGACCATTAATCTAGATAAGATCATTCTGCTGAGA
TCATTGCTGTATGCAGCATTCTTTTTTCTAGAAAAGGGATCTAAAATGAGCTCATGTATA
AGTTGCAGTCACAAAGGTGCTTTATACCAACAATTTGCCAGAAAAATCTGCTCCAGAATT
TGCTTTTGAATTTTAAAATAATAGGAATATTTAAATGTTTACCAAGTTACAAAATTCGAA
TTTTGAAATAATAGGAATATTTAAATGTTATCAAGTACACAATAACAAAAAAGAAAAGTC
CAGTGTGTAATCCTTAGTCCCGCAATTGTCTGCCAGTGCCTTTTGACTTATCCAAACTTA
CATACAACACCCTAAACATCCCAATCTACTAAATAGGAAGAGTATAGGCAAATGGGCATA
CATACAGTGAACTGATCCGGTCGGCGTTTCTCTGAAGCAAGAAAGCGCAACCTCATAGTC
GCGACTCTTTCATACTCATTCTTAAGTACATAGCAGGTCCAAAATGTAAATACATAGGCC
ATAACCAAGTGAGCAATAAACCTGCACAAAAACTTGAAGTGTCAGCATAATCATCAACAT
ACAAGAATGTACGAATCTCGAACAAATATGGGTCGAAGATTTATGTTGCGTAGCTGATAT
GCAAGAGCATGCTTTTGAGCAGAAGTGCAGAACAACTGCCTATAACTGAAATTGACGGGC
AGCTGCTAAATGCTAAGCCTGTATAGAGTGCCTGCACCTTACTAAAATGACACAAGAATG
GTGCATTGCTCACCCAAATAAACACTAACAATCCTGCACCTATAAGAAACTCATGTGCCT
ACGGCGCATGCAGTATGCAGATTACTAAAATGGTTGAACTTCAGTACAGTCGCCGTCCAT
AGTTTTTAAAAGAGATGTACTGAAAAGATATAACTATAACTAAAACTGATTGTCAACAAA
GCTTATAATGCATGCATATTAGCATATATACTCCCTCCGTTCCAAAATNNAAGACCTTTT
AGGTATTTCACTAGGAGACTACATAC