morexGenes - Barley RNA-seq Database

Contig contig_37489
Source Contig contig_37489
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_37489 (10442 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_37489

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_52380	3	1520 bp	MLOC_52380.1	Available	Available	LOC_Os05g43690.1, FRAME:+1, EVALUE:8e-40, 13105.m04605 protein glucan endo-1,3-beta-glucosidase-like protein 3 precursor, putative, expressed
MLOC_52381	1	1345 bp	MLOC_52381.1	Available	Available	None
CDS Structure of MLOC_52380

CDS Structure of MLOC_52381

Contig Sequence (10442 bp)

>contig_37489 10442 assembly3_WGSMorex_rbca.fasta
CTCCTATTTGCCGCAGTATGCTCCTGAGTGCGACTTTTTTTTTTGACAGTTTGTTGCTTT
TATTTTCGGTTTTATACGTTTATTTGGTTTGCCGTTTCCCTTTTTTTTTGCTTTCTTTAC
TTCAGTCTTTTCTGGCTTTCATTTGTATTCTTGTGTTCAATATATACCTAAAAATTATAT
ACATTGTACATTTTTTGTACACATTAAGGAAACATTTTTTACTACATGTTTAAAATTATA
TATATAAATAAATAAACTTTTATGAAGTATAAATTCTGATGCCTAATTTTTCATAGAAAT
TGTACATTTTTCGTCTACTTCTAAATTTATTTATATACCTATTAACAATTTGAAATACAT
GATTAATATCTTTTCAAATAACCCCTCTTTCCAATAATATAAGACGTTCCAACATCCAAT
ATGTGGGTATATGGAATGTAATAATGTCTTATATTTTGGGATGGAGGTAGTGCTTATTTT
CAACTCTCTTTATTCTAATATACATATTTGAAACAATTTTGTTATGATATGAAACATTTG
TTTTAAACTATGCAAACATTTTCCTACATTGGATACACATTTTTTTAATATCACAAGCAT
TCTGATCAAAACATGTTCAGGTTTTTAAATTGTGCTCCCTCTGTCTGAAAATAAGTGTCT
CAACTTTATACTAGCTCTAGTACAAAATTGTATTAAGCTTGAGAGACTTAATTTGGGACA
GAGAGAGTATAACATTTGTAATCTGGTATTTGCATTTTATGAAATAAATGAACATTTTTG
TAATATCACATAACATACATGTATTTAGTACTCTCTCCATTAACAAATATAATATGTTTC
CAATATTTCAATATGGACGACATACGGGCTGGAATGAGTGTACAAACATATTAAAATGCG
TCTAGTGTTCATCTAAAAACATATAATATTGAAATGGAGGAAGCGTTTTGTAAAGAAAAT
GGAGAGAAAAAACACATGCAACTCAGCATGACGAGGCCACATAGGTATTAGGTCGGCCTA
GTGCCCCTGCCTGCAAATGACCTTCACATAGGAATTGCTGTAGGCGACACATATCTACAC
ACACGACACAAGTGTCGGCCAGCCATGCGCTATTGGGCTTTTGCATTGTTTTGGACCTAT
TTTTAGTTGTTCAGTAAAATGGGGCGATGGGTTATGACGTACCGCTCCCGAGCCTTACCT
CAGCCCAGCCATGACCTCGGCCGTGTCGGCGTCTTGGTACAACCTTATTTAGCATGTGGC
ATGGCAGATGACGTGGGAGCTGTCCATTTGGGGCGGGGAGTTCTAGTTTAACTTTTTCCT
TTTGTATTTTTTTACATTTTTTTCCTTAACCTCTTCTACCCCTAATGCTTTTCAGGATTT
TATAAAAGATTCGGATTTCAAATATATAAATGAATTGGAAAGGTTTTCTGGATTTTAACA
TTTTTCATAAATTTAGAACATTCTATCAATTTCCAATAAATGTTCATAAAACTGAAAAAA
TACGTTCCTGGATTTGGATTTTTTTTCACAATGTTAAAACAGGTTTTAAATTTCATTAAA
AATTCATGTATTTAATAAATCATGAATAGAACACAAATATTCAGAATTATAAAAGTTGTT
AAGGAATATAAAATATTTCTCAGTTTAAAAAATGTATTAGAAATTAAAATATTTTTCGTG
TGGTATAAAAATTGACGACTTTCAACATAAGAATCAATTTTGGACAAAACACTAAGGATT
TTGTGGAATGTCCAAATAGCTAGGCTGTGTAGTTCAAAATTTTCACCACTTGCAATTGCT
CTATGATTAAGTCCAACTTATCATCGTACTTCATATGTTGGGTCGAATATTTGTGACTAC
TAGTAGTTAGAGTAACTCCAACCGGCGGACCCAAACGGATGCGCGTATTGTGTGCATTTT
GTTCGTTTGGGTCGGCATATCAGCCCGGTTTTTTATTTTGGTCAGTCGTATGCCCAACGC
GTCGACCCATCTTTCGTCCGCATATAATAGTCTTTTCATAAGAAGCGGCCCGCAGTCATG
CAAGCCAAAGAGTTCACGCTGGTGAGTTTTCAACGGCCATCAAACATTTGCCAGCCTTTA
AAAAAAGTGCGCAGTTCACACTGGGCGCACCTGTCAGTGGCCGACACACATGCCAACACA
CGAAATGGGACTGGTTCTACCACGCCATCTCGGCCGTGGTCATACCCGCACACTTTGTAG
GCATACAAAAAACATGACGCTCTCTGTCATGCATCACTCTTCATCGAGGTTGAGCATGTC
GTCCTGCGTCTTCTCGAACCAAGACCACTTCATTGGAGAGATCGTGCTCAAGTCCACCTT
CATGATCTCGATCCTTCGTCATGCAAGCTAGCCGGACTTCTCTTCCTCTAATAGCGGTTG
TGGTGGCCTCGATCTCAAGCATCTTCGCTTGCTTCCCCGCCTCCAACTCAAGCTTCTTCT
TCTGGATCTCCATGAAGGCCTTGATTTACTCGTTCTTGTCTTGTCGGCGCTTCTCCTGTC
TTGAATCCTTGTTGGCGATCATGCCTTGCAAAGTAGATTGCAAGGCAAGGGACGCCGTCT
CGCGCTTGTCCTCTTTTTTGGAGTTGGTCTTTCTCCGTGGCCGCGGCTTCTCCCCCTCAC
CATGCTCTTCAACGACTTCTTTTCCTCAACGCGTCCCGAGGGCGGCATATTGCGCCCTAA
ACTTCTCCTCCCCTTTGATGATCGCCCAACAATGGATGAGGTTGAAGGACTTTCCCTCAT
GTTGGGCCTTGAATGCTTCCAAAGCTTGAAAGGCCTACAAAATGGACAAACAACCACCTG
GACAAGCAAGCGAATCCAAAAGTTGGGGACGAAGGGGCGACGAGCCGGTGTTGGCCGCGG
CCACTGCGGCAGCGGCGATCCCGTGATGGCGTGGGTTTAACCCTAGCATCGCCACGGTCT
TCCTCATGGCCTCGCGGACGAGCTGGTTGGTCTTCGCGACCTCGACCTCTTGCTTTGCGA
CGGTGGCGAGGGTGGCCGCGGTCACGACGTCCATCCTAGCTTCCTGCGCGCTGGCTTCTT
CTTGGACGACTCGATGGCGCGCTCCTCGTCGGTCAGCTCCTCTTCTTCCTCGTTTTTGTC
GGCGCTTTGTAGGGCTTGCCTCCTTTGGCGCCAATGGGGCCGGTGGTGGCGAGGAAGGAG
AGGCACGCGACGACGTCGAGGGTAGGCGCGTCGTCGTCCATGGCGTCCGTTCCTTGTCCG
TGACGACGCAAATTCGAATGAAATTTGGACTTGAAATGGATCGCAAGTGGACAAAAATAG
ACGCGCGTTTGTTTGGATCGGCGTGTTGGGCTGAATTTTGGGTGTGTGATGAACCAATCG
GACACGCGGACGAAATGAATCGGCGTTGCTCTTAATTAGTTATACTAATGCAATGCAAGT
ACTTTCGGGCCAAGTTGAGCGTTGTCGTGCTGGCACTTGGGACCCGATTATTTATTCAGT
TAATGATGGCTGAATAACAATCAGCATACCGACATTTTGTGAGCAAATAACTGTAGCGCC
TTTGTAACAAGAAGCTGTAGGCCCTACCACTGAGAAGGAACAAGACATTTTTGCTATGTA
TGCGGACCAGCGCCCACATGTGGAGGAGAGGACACACCATGAGACAAGACACATGAAGAG
AGTGAGAGCATTTGAGAAAACCCCAGAAAAGCACTCTGTCGCAGACCATGTGAACACCTC
CTACATCATACAGTGGTACAAGGAACACATAAAAAATAGGGAGAAAGCACTTCACAGAAA
GTAAATGGAGAGGGCAACAAGCACCGTTCGGCAGTTGGTTCATCCACACCGGTGGCCGCT
TCCTATATGTGCTCCTGAATATGAATACGAGTTTCTCCAAGACATTTTGCGGCATCTACC
CACGCCCGAGCGCCCACACGCACGCCGATGACACAACGGTTCTCCCATAAAAACACTCTG
TCTCAGGCCATGTGAGCCCTCGGCCCATCATACGGGGAAACAAAAGCGAGCGGGAAAGCA
AGCACTTCCCAGCAACATCGACGTCAAGCCACGCTGGACTGGTGCAGAATCCAGTAATAA
CAATAAAAAGATACTCCAGAGCAGAAAATAAACAGCAGCAAGTACCATCCGACCGTTAAT
CCACACTGCCGACTGGCCGTCACCACCCACTCTTTTTATTTTTGACAGTGGCCTGGCTCA
CCACCGCACGCTGGAGTACTGGCCTGGTTTGGTGGGAGAAATAAAGCCATCCCGGCCGAG
AGCCGCAACATGCATCGGGCTATCGCCCATGCCATGCCATGCCATGCCGCGCCAAAGCGG
GACAGCGCGCCCTGCACGCCTTTGCACGGGGCGCACAGGACACGACGATCCACCACCCAT
CCATGACTCGACTCATCACCGCCGCTTCAGGCAGCAAGGGAAAGGAAATAAAGCCGTTGG
CATGCGGACACGGACACGGCCCCGGCTCGTCACCCCGTGGCAAGGACACTGCCGCACGGT
CGCACCGCACGCCGGAGACTCCCCCAGGCGAAAAAAATGGTGGGGGACGAACGAACGGCT
CGATGCGGGCTTGCTTGTGTGGTCGGTGCTGCCGATAAAAAGGGGCCGCGCTTGGGAACT
TGACCGCACTGCACACCACCACCCCACTCCACTCTCTCCCACGCCACGCCGACTAGCTCC
CTCCCCCTCTTTGCTTGCCAGCTACTAGTGCTCTGACCTCGGCGGCGAGAGAAGAGCTCG
AGCTCCATCCCGCTGCTTGCTGCAATGGCGGCTCCTCTGGTCCTCATGCTCTTGCTCGCC
ATGTTCGCCGGCTCAGGTCAGCGGCCCCCTCCCACCCCCCAGCTCGCTCTGCCCAAACAT
ACTACTCTAGTTTTGCCTGACTAGGTTTAGGTTGGGTTGTTCATAGATCTTTTTTCTTTT
TCATTTACTCACAAGGCCTGGATCTTTCTTGCTCTAGAGCACCTCTTGAATGCCCTCTGT
ACATCTCTAAACAAACTTTCCTTTGTAGTAGTAGATGTTGTTGAAATCTTGCTGTCTCTG
GACCAGGGATGCTGGATGCTGTTCTTGCTATTTGTGCCTAGTTTTCCCCCATCCTCCGTA
ACTGTAGAAGATCACAGATTTATTCCTTGTTAGATTGGAGAGCTAACCGGCGGCTTGTTG
TTTGCTTGTTGAGCAGATGCGATGTACTGCGTGTGCAAGTCGGACGCGAACCCGGTGGCG
ATGCAGAAGGCCATCGACTACGCGTGCGGCAAGGGCGCCGACTGCACCCAGATCACCTCC
AACGGGCCCTGCTTCCAGCCCATCTCCGTCGTCGCCCACTGCTCCTACGCCTGCAACAGC
TACTACCAGAAGAACGCCGGCATGGGCGCCACCTGCGACTTCATGGGCGTCGCCACCCTC
ACCGGCGCTGACCCCAGCGCCGGATCCTGCAAATACCCCGCCAGCGCAAGGTATTAAACT
CCCTCACATGTTTGCTCGTGGCTTAGAACATGCTTACTAGAACTAAATCAGTGAAACTGT
TTTAAAATTTGATTTGGGGGCATTTCCCTTTTAATAATACCCCCGATTGGAGTACTACTT
GAATCTGGGAAGTAGAGTATCTTAAGTGAGATGCAGTATGGCCTCTGACTGCCCCTGACT
GGTGTCATTTGTCATTTGGCAATACTTTACTTGGGTTATTAGTGTGCCGTAATCTAGATT
CTTTACACGGGCACATTTACCACGTACACGCATGATCCTTCCTAGTCCAGTGTTCAGAGT
TCATGGTTACCAGAGTTAACATTGGCAAAAGCTGTCCAAGTATATACGTGGAATATATGC
TGTGCCCACGAATGATAGTCGAATATTACAGTACATCTGCAGGTAAATACAGCACGTAAC
ATCTGCATCTTTAACATAATACTACTGCTTGTAGTTGTACTGAATGTCCACTCTAGTAGC
TGGATGTTCTCCTTTGGGTACCGTTCTTGAGCTCTTGGTTGCCCATGTGAAGCAAAAGGT
GTCTGAATCGGATATCTCTAGTCCCGACCTTAAAGGAAGACCCATCTTTTGCCGATTGCC
ACCCGTTCAAAGTGCCATTGAACTTGGGCAAGCGCGTCATCATCATTGCAGCTTGCATTA
TATATGCAATATGTACTAGATAGATTCGAAGCAACTTTCTCGCTTTCTTGAAGATTTCTG
ACGCTGTGTCTGTGCGCTCCGTGTAAATCTTTTTTCTTGGTGCAGCGGCGTGGGCACTGG
AGCAGGCACCGGCGGCATGGGCACCGGCGCTGGAGCAGGAACTGGCGGCATGGGAACCGG
CACAGGAACCAGCACCGGAACGGGCACGGGCGTCAGCACCGGCACCGGCGGCATGGGGAG
CATGACCCCGCCGGGCGCGACCAGCACCGGGATGCCGGGAAGCCCCTTCGGCGGCGGCGC
GTACGGCCCGTCGGGCATGAGCCCGGACTACAGCGCGGCCGTCGTCGGTCGCCGCGTGGC
CGCCGCGGGGCTCCTCGTGGCGGCAGCCGCGCCGCTCCTCCTCCACTTCGTCTGATCGGG
CGGCCGCTGGTTGGCCGGCGGAAAGGCGCGTCGGCAATGCCCGCCGCTTTTGCGTCCCGT
CGGCTCGCCTTTCCGGCGTGTTTTGATGGTCCGTTGGATCGGGAGTACTGCTAGTAGGTG
CTAGGGTTTGTCCATGGGTGGTACTGTTAAACTGACATTGTTGTATCCGCGCGCCCCCCA
TGTGGAGCGTGTTTGTACCGGTGCGGTTCGTGGTGGTAGAGATGTGATCTAGCGGATTCT
TTTTCTTTCTCTCGTAGCGGTGGTGTTCCGAGACATATAATCATGTGTTGTCGTTCCATG
CGTCGTCTGTTTCTATGCACACTTTTGTACCGCTAGCTCATCATCATTTTTGCGAGTAGA
TAGTAGCGATGTCTTTGGCTTGGCATCGTCAGGCCGACCCACCTACCCCTTGATGCCATG
ATCTCTCTTCTGCGCTTGTGTGCATGCACGTTGTGGACTTGGGGGTTTCCGGTGCGGCGG
CACATGGAGCTTGGACGGATGTCGGGCAAGGAAAAATATCGCGGCGATCGAGGGAGGGAG
GGAGGGAGGGAGGGAGGGTCTCGTGCTCGGAGCCAGAGTCCACTTTGATCTGGGCTCTTG
TCTGGGGCGTGCTAGTACAGTGTGTATCTGGAGCGAGCGGAACACCGCCGACACCGACAC
AGGAAAGGCTCACGAGCCACGATACTGTGCCTGTGCCTGTGCCTCTGATCTCTTCGGGAG
ACGCGCGGTTTGCGACGGGACCAGCGGCGGGCGCAGGCAGGTGCGCCGACGGGATTGGGC
GCATGGTGACGGTGCACTTCGGCGCGACCTGCTGGTTTTTGTCAATGTCTTGGCCTCTTG
AGAGATGTTTTTTTTTGAGAGAAAATGAGAGAAGCAAGTGTACTCCCTCCATCGTCGGCG
AATAAGTGTGCATATAATTTTTTTAAGATAGATTATGAAGTAAAGTAAAAAAGAACTGTA
TTGGAAAGATTAAGCTATCATCTCTCTCATCCTTAATTACTTCACGTCCAATGAGCTAAG
CGCATGTAGAAAGCAAGGAAATCATGTATTAAATGTTATTGGTCTTGATTATCGTGTGAT
GAGAGAGAAGCATTTTTTCTCTACTTTATAGTGCATTGAGAAGATAGATGTACACTTTCT
GATGAATAAATTTTAAAGCTAAATGTACACTTATTCGTGAACGGAGGAAGTATGTAAGTA
CCTGACACGAACCTTAGGGCATCTTTCATGGTAACTCTCAAATTTTTTAGACGTCATCCA
ACCATAAACCGTATACATTTTAACAAACTAAAGGATCGCATACATTTAACCCGTATTTTG
ACAAACCGAACAAAATTCATGCAAATCAGACAATATTTATCAAAGTTCGCATGCATTTGA
CTCGTATTTTAATAAAGTGGAGGAAATTCATGTAAATCGAACGATATTCATCAAAGTTTG
CATTTAAGATAAATTTTTGTTTTTGTCATTCTAAATTTTGTCAATTTCCCTATGTCACTA
AAATCTGACATTTCACTTTTGTCACTTTTAGCTTTTAACAATTACCAGAATTGCCACTAG
TGGCAAAAGCAAAATAATTTTATTTTATTTTTGCCATTCTTAGCTTTTGACAATTATCAC
AATTGTCACTTTGAAAATTTTGTTTTTGCCATGAAAATGACAATTATGATAATTGTTAAA
AAATAAGAGTAGCAAAAGTGAAACGTTGAGATTTAAAGTGGCATGACGAAAATTGACAAA
ATCTAGAGTGGCAAAAATAAAATTTCCCCTACATTTAACCTGTATTTTCACAGACTGAAC
GAAATTCATGGAAATCGGACTATATTCATCAAAATTCGGATAAGAAGTAGCATAAATCAT
CCATGCATATCATGCAAATTAAGTCTAGTACAAAAGGTTTCAAATTCGACTACATTAACG
AGATGTCTAAATAGTTTTTGATCAATGAATCATGTCGATCCACACATACTGCACCTCCAC
CTTCATCCAATAGTGTGTGATTTATGGTCGTCCCTTTGTCCTGTGGTACGCCGCGACAAT
GCGTTTGGGCCACATATAGAGAGTAAACCAACATTAGGTGAATGAATCAATTAACAAGTT
GAGCAAGAGGAAACAAAAAACTTACGATACCTTTGCTTTGAGCTGACGAACCACGTCATA
AAACTTGATGATGCTAATTTGGATAGCGTGGCAGCGATACAACAACGACCTCGCATTGCG
TGGTTGAAGTAGAGATGGAGGTGGAGGGAAGGGGAAGAGGCGGAATGCATAGGAATGGTA
CCGGGAGGGAGGATTGGGTGGGCTAGAGTTGTCGGATAACGATGTTTCTCGTGTGCAGAC
TCCTGCAAAGCTCCCCGACATTGGTCGTCGTTTTGCGAGAGAAATCGCATCAGGACCGCG
CCGTGGACCGGTACACACCCGTGTTGGATGTCTTCAGTGATCTACATAACGCGACCAGGA
CAGATGCTGGCGGTTTACGGGGCCACCTTGGAGATGTCCTTACTACATCGGAGTCTTTCA
CAATAGACTCTATTTACCGTACACACGCATCCTGAGATACCCATCAATAATAGTAATAAG
AAACTATGGAAGTCCAAGATTTCATTTAAAAGTCAAAATCTTCCTCTGGTATCTTCGTAG
GTGTGCTTATCAAAGACAACCTCGAGCAACACAAGTGTCAAGGGAGCAAGTAGTGTTATT
TTGTACTCATAACAAGACAATAAAACAACTCTTTTTTCAATGCAAGTTTGCACGTTCCAC
GTAACTAGCCAACCAAATAGCATCAAATTTGTATCCGCTCAGGAGTGTGAGTCGATATTT
TTGGTCATCTCTTGAACGATATTCCAAATAGGTTCAAAACGTTAATAAGGATGGGAGCGT
ATGCATTAATGTGGTCGTTATGCGTGTGTAGAAATGATTTGTTTTTTGATAAAAAAATTC
TTCTCCTCTAGAGGTTATATTCCACTTTACACACTCTCTTCGTACGTGCCCTACGCTACA
ACGACCAAAGTACCAACCGTTATTTAAGGCGGCGTGTACGTGGTTGGAGCAAGTGGCTAC
AAAGGGGTTTTTCCCAATATGGGTGACAACATAACCACCAGATCGACCAATCACCACGTT
CGACATAGGCATAGTGTTGGCCTATAGAACTCTATGGTTGTCGTTCTGTCGGTTTTGTTT
CTTTTCTTTGTGTCAAACTTTCCAGAATTAGTTATGTGCATCTTAGTTATACAAAGGTTA
GGTGTTACTCATAATGCTTTGTATCCGTTTGATTCTATATTTTTTAGATAATAAAAGCAC
ACTTTATCAAATAAATATAAGCGGGCCCACGTGTCAACCCGCTTGTGTCCGTTTGAGTTT
GAGTCCAAGCGGAGAGAAAAAGCGCTAACACATTGGCGTAAGAGGAACTCCAACCGGGCG
ACCCATTTCGTTCACATGTGTCCGTTTGGGTCGGTGCGAAACAAAACTCGGCCTAGCGCG
GCTACTCAAATGGAGACATGTCCGTTTTTTGTCCCCCTATGACCCATTCCACGCTCAAAT
TTGGGTCGTGATACATATCCAACGTATCTATAATTTGTAATTGTTCCACGCTATTATATT
ACCATTTTAGAATAATTTTTAAGCATTTACTTGATGTTTTACATTATTTTTGAGTACTAA
TCTATTAACTAGTACCAAGTGCTAGTTGCGGTTTTCTGCATGTTTTTGGCCTTTCATGGA
TACTCTACCAAACGAAGTCCAAATACCCCAATTTTTTTTTATGATTGTTCTTAACAAAAA
TAATACCTGGAAGCTTCAGAGGAAGAGAGAAGGACACACGAGGTGCCACCAGGCCAACAG
GGCGTGCCTAGGGGGTGGTGGCGCCATGATGGCTTGGGGCCACTGCTACGGCAACAAAAG
AC