morexGenes - Barley RNA-seq Database

Contig contig_37438
Source Contig contig_37438
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_37438 (7801 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_37438

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_52316	1	3615 bp	MLOC_52316.1	Available	Available	LOC_Os08g04190.1, FRAME:+3, EVALUE:0.0, 13108.m00392 protein homeobox and START domains containing protein, putative, expressed
CDS Structure of MLOC_52316

Contig Sequence (7801 bp)

>contig_37438 7801 assembly3_WGSMorex_rbca.fasta
GTCAGACTTATACCCACGACATGTACTATACGTAATAGCGTCGAATAGATATACGAAAAG
TTATTGTTTCGACCAAGCGTGGAGAAACAGAGGTCATTTCTTTTTAGATTCATGACGATT
TGTGTAATGGTTCCTTCATTGCTATATGAAACTCCTAAAACCTCCAAAACCACTCGTTTC
CAAAAAAAATATCACAGCACTTGGCGGATGCTGACGCGTGGTTGCCTTTTAGTGCCGGTT
TGTGTTACCAACCGGGGCTAAAGGTCTTTCTGCCTTGTCGCCCCACAGCGGCAACGTGGA
GCTCCTTTAGTCCCGGTTCGTAACGCAACCAATATTAAAAGTTGAGGCCTTTTGTCCCGA
TTGATTAGTCCGGGTTACAGAACCGGGACTAAAGGTCCTTAAGAGCCGAGACCAAAGCTC
TATTTTGTACTAGTGATACTCTCAGTATGATTGCTTGACTCGTTTTATAATTGCTATAGC
AATCATGATTTATCTACTAGTTTTGTTAGCAAAATTATATGATAAATCGCTCATATTTCC
AACAAAGTTGAGAAGTGGTTGAAACCACACATCACTAACTTACTCACTGCCAATCATTTC
GAGTGAGTTGTACGTTCAGAAAAAAAATTGTTTTTTCTTTCGAAGATCAGACGATGGACT
GACATCATATGTTTACTGCCGGAAGGAAAAAAAATATTTAGACAAGTTTTATAGCAATGA
ATATTGCGATGTATATAATGGTAGTGTCATTGCCCATTGCCACGGTTGGTGAGGCATGGT
CAACAAGTCATGCATTTCGTTGCAAAAAAAAAAAAAAAACACAAGTCATGCATTCAACCG
AATTAACCAAGCGAAAATGATCTATTCAGCAAATAAGAACTTCATTTGTTTTCCCTCCTT
GATCTTCACAGCAGGAGTAGTGTATATACCTTCATCGATCAGTCTTCACAGCCCAATTAA
CCGGCCGGTATACTGCATTTTCCTCAGGCCCATAAAATACTTCATGGTCGATGGTGTGCA
TGCATGCATGTGCATGTGTAGTTCATGTACGCAATAACTTCTGGACCTAGACCGCCTCGC
TCGGCCCAGCGTGTATAGTACTCGCCTTCCCAAGAATTTACGCGTAGAAAGTGGAAACAT
ACGTACGCGCCTCCTGCATCCGAAGTTAATTACAAACTGATTTGGCGCTGTAAAGAAGAA
GAAGAAGAAAGCAAAAGCATGATGCCATTTTAACGGAGGTAAAACATGATGGATGGATCG
ATGGATGCACACAAATCCGAGTACATACGTACTACGTGCGTACGTATACACATGATCTGT
ACCACCGCATCGCTCCCGCCACAGTCTCCCGCTACAGTCGAGTTTCTCTCTCTAACCCCG
CAGGGCCGGGGTAGAGAGGAGAGGAGTGAGAGGCATGCTGCGCAATAACTCCACGCCATG
GCCGCAATGAATGCCATTGCACCCTCCTCTCGCTAGCTACTCTCCGCAATAACTCCGCCC
CATTCAATACGCGCACCCTCCACCCCTCCCTCTCCGGCCCCTTCCCCTCCGTCTCCATCC
ATCCTCCTCTTCCCCCCTTCCTCTCTTCCCCTTCCTCCCCGATCCATTCCAGCGCCGCCT
CCCGGCCGCCAGAGCTTCGCCGGCCTGCTCGCTCGCTTGCTGTAGTGAATCGATCGACGA
AACGCGTAGCTACCTGCTGCTTTGCTCCGTGGCGGCCGCAGAGGTATTACATAGATCTGA
GCTCGGGTATCGCTCGACGGATCGACGAAGTGCGTAGCTAGCTAGGTAGCTTCGATCCAC
TAGCTGCTGCATGCGAGTCGCAGGAGCCGTTGCATGGTGCGGGTGGGTTCCTGCCTAGGG
TTTCCGAATCGCTGAAGGAGATCAGAAGTAGCATGCCCGGTGGGATGATGATCCCAGGAC
GCAACATGATCGGCCGGAGTAACGGCGCCGGCGTCGCCTACGCCTCCTCCTCCTCCTCCG
CGCTCTCCCTCGGCCAGGTCACTACATATTCTGCTGCACCTCTCTCTCTCTCTATATATA
TATCAAGTTCTTTCCATTTTAGATAATATGGAAGAGTTTTATCATTTCCTTTCCTTGTCG
CTGCACCGCATCGAGTATCGCCAGGCCGGACGGCCTCTCCGCATTGTTCTTGTGCATGTT
CATGCACAATTAAATCTGTACTTAATCACTTCATCGCACTTGCTATAGCTAGTATTTTCG
AGGGGTACAAAATAGCTTAGTCAATTAATTCTGTGCATATACATGCATATTACATGCATG
CCTGTGTTCATCAAGTGTGATGGGCCGCGCTGGGGAGTGTATCTGCTCTTCAGAAAAGAA
GGCATGTGCAAACATTTAAGTTCTCGCAGAATTAAATACCAAAAGCCAAAACGGGATTCA
TGTCACTCATATCTCAAGGCTTAATTTGTTGCTTTCATATCTAACCGAAGAAATGAAACG
AAAGATACATGTATGCACGCCTATGGTTGGTGCCTGCACTTGGATGTGGATACACAAGCA
TTAACTTGCTCCTTTATTTCTCAAGCTGGGTTGGGTTGTAGGGCTGCTATACCTCCATTC
CCAGCCCACTCTATATGTTTTTCAGTAGTTATTGCTTTCCAAAATGTACCAAATTTCCCA
ACAGTGTTTCCTAGTCAGTACTCACTGGTACTCCATGTGCAATTAATATTTTGTTTCTAT
CATCTCCTCTAACTCGCTTGTGAACTCTTGCATTTCAAACAAGGTTTCCCCAATTTTATG
TACACTTTAAATCAGTGTAGCAATTCCCAAGCCTCTAATTAATTTTTTTTGCGGAATAAG
CCTCTAACTTTTCTTGTACCTCCCGAAAATGTTATCTGGGTCAGTGCTCAATGGTGCTCC
ATGGGCAATTTATACCGTATCTTGAATTTTTTGATTTCCTCATTTCATGTACACTTCAAA
TCAGAAGCAATTCTCAAGCCTTTATTAATTCAGTACCCAGGTTTCTGTTCAAAAAATACT
GTAAAATGGCAGGTCAATATGAAGATGCAATGAATGTAGACTAGCTAGCTGCAGCATTTT
AATTTCTCCAATTGCCTGCCACATTTAAATCATTGAATTATTTACTTTTATACACTTCAT
TTACTTAATAACAAAAAATTGCTTTGATGCAATGTAGAACTTGATGGATGGGATGCACCA
CCACCAGCTCCCAGCAATGCTGCAGCACCAGATGGTTGATCACCATCTTCTTCTTCCCCA
GCATCATCACCATCCTCACCAGCAGGCAGCCACGAGCGACAGCGATGCCCGGGGCCCCCA
CGGAGGGGGCAACAACAACAGTAGCAACAACAATGAAGAGCTCGAGATGAGCAAGTCGGG
TACCGGCAGCGATAACAACCTCGACGGCGAAGGCGGTGGGGGCGGCGGGGAGGACGACGA
GCAAGAGGACCCGGCCGGGCAGCATCCCAGGAAGAAGAAGCGTTACCACCGTCACACCCA
GCACCAGATCCAGGAGCTTGAGGCCTTCTTCAAGGAGTGCCCCCACCCCGACGACAAGCA
GCGCAAGGAGCTTAGCCGCCAGCTCTCCCTCGAGCCCCTCCAGGTCAAGTTCTGGTTCCA
GAACAAGCGCACCCAGATCAAGGTAGGTGACCATCCATGGCGATCCTCCATGCATGAATC
ATGATACATTCCATAGTTCATACTCCATACCATAAGTCAGTGCCTCGTAATTTACTTATG
TGCATGCATCCATGTCGTGCAGACGCAGCACGAGAGGCAGGAGAACACGGCACTCAGGAC
GGAGAACGACAAGCTGAGGGCAGAGAACATGAGGTACAAGGAAGCGCTGGCCAACGCGTC
GTGCCCAAACTGCGGCGGGCCCGCGGCCATCGGGGAGATGTCCTTCGATGAGCACCATCT
GCGCATAGAGAACGCGCGCCTCCGCGACGAGATTGACAGGATCTCCGCCATCGCCGCCAA
GTACGTAGGTGGCAAGCCTGGCTCCGGGGTGGCTGTGGCCTCCGCCGCCTACCCGCCACT
GCCACCGCAGTCTTCCGGCCGCTCTGCGCTCGACCACCTAGGCATGCCCGGCATGTTTGG
CGGTGCTGAGTTCGATAAGCCGATGGTGATCGAGCTGGCCGTGGCGGCCATGGAGGAGCT
GGTCCGAATGGCGCAGCTCGGGGAGCCTCTCTGGGTGCCATCCCTCGACAGTGAGGCGCT
CAGCGAGGAGGAGTATGCTCGCGCCTTCCCACGGGGTGCACTCGGCCCCAAGTCGCCGGA
GCTCCGGTCCGAGGCGTCGAGGGAGACAGACGTTGTCATCATGAACCACGTCAGCCTCGT
TGAGATGCTCATGGACGTGCGTCAGTGGTCGGCGCTCTTCTCGAGCATCGTGTCCCGGGC
GGCCACGCTTGACGTTCTGTCCACCGGCGTCGCCGGCAATCACGACGGCGCCCTGCAGCT
CATGTCGGCTGAATTTCAGATGCCGTCGCCCCTGGTGCCAACGCGAGACACCCAGTTCCT
GCGCTACTGCAAGCAGCATCCTGGCGGTGCATGGGCCGTCGTCGATGTCTCCCTCGACGG
TCTCCGTTCCGCTGCACGGGTGGGCGGGCACTTTCGCCGCCGCGCCTCCGGCTGCCTCAT
CCAGGAGATGCCGAACGGCTACTCTAAGGTGACGTGGGTGGAGCACGTCGAGGCAGGTGA
CGATGCAATGATGCACGATCTGTACAGACCCCTGGTGAACTCTGGGCTGGCATTCGGCGC
GCGGCGGTGGACGTCGACATTGAAGCGTCAGTGCGAGCGTCTGGCGAGCGCCATGGCAAC
TGTGCCCTCCTCAGGCGGTGACGTGATTACGACGGCGGAGGGACGAAGGAGCATGCTGAA
GCTGGCGGAGAGGATGACGGCGAGCTTCTGTGGCGGGGTGACTGCGTCGACGACACACCA
GTGGACGACGCTCTCTGGTAGCGGGGCGGAGGACGTGCGTGTGATGACCCGCAAGAGCGT
CGACGACCCCGGCCGCCCACCGGGTATCATCCTCAACGCTGCCACCTCCTTCTGGCTCCC
CGTCCCTCCCTCCCGCGTCTTCGGCTTCCTGCGCGACGATTCCACCCGCAGCGAATGGGA
CATCCTCTCCAACGGCGGCGTCGTCCAGGAGATGGCCCACATCGCCAACGGCAGCCACCA
CGGCAACGCTGTCTCCCTCCTCCGCGTCAACGTGAGTACTTATATGCACATTACTCCATT
ACTCTACTTCATGTTTCAGGGCCATGGTTGACAACGACATGAACGGTGTTCCATCCATTC
CATGCAGAACGCGAACTCGAACCAGAGCAACATGCTGATCCTGCAGGAATGCTGCACGGA
CGCGACGGGGTCGTATGTGGTGTACGCGCCGGTGGACGTGGTGGCCATGAACGTGGTGCT
CAACGGCGGGGACCCGGACTACGTGGCGCTGCTGCCGTCCGGGTTCGCCATCCTTCCTGA
CGGGCCGGCCGGGTCCCCGGATGCTGGCGGGTCGCTCCTCACCGTCGCCTTCCAGATCCT
CGTCGACTCCGTGCCTACAGCCAAGCTCTCGCTGGGATCCGTCGCCACCGTCAACAGTCT
CATCGCATGCACCGTCGACCGCATCAAGGCTGCAGTTGTCGTCAGCGCCGGTGACAACGC
TGGCGTCGCCGCCCGGTGACCGCCATCCATCATCGTGGGCAATGGTAAGTAGATCAAGAA
TGCATGCATGGAGTGATCTACTACTATAAAATATTGGAAATAAAGATTGGATTCCATTTT
ACTTGGCTTTGTGCAGGAGATCAAGAGGGACCAAGAGCGGGTCCGGAGGTTTAGCAATGT
GGGAAGTCAAGAACGCACCGCAGACTCTCCTTGCCAAGTGTTGTTTGCATTGCATGCATA
ATCCCCTTTCTCTCTTCTTCCCATGCATAATCCCCTCTCTTCTTCCCATTCATAATCCAT
TCACCACCAGCACCACCACCACCACAACACCATCACAGCAAGATGAAGGGACCAACCATG
GAGGAACACAACCTAGGTCCTATGATCATGGCTGCAGATAAATGCACGCATTGACATGTC
ATAGGCTCTGAGTTGTGTTTCTTAGTTAACTAATCCCAGCTCATCTACATATTTACATGT
TTGTGTTTGCTTCATAGTAGAAGACAAGCACAAACCCTTTCTTCTTAATTAAATGATCAT
TTGCATGCCATGACACAAATTCAGAAGCAAGCAAGCAGGCAACACTTTGCAAGGGCGGTT
GGTTCGGGTATTGACTTCTCTTTTAGTTTTCTGTCTCTGGGTTGCCAGTCCCTCTCCAGA
ATGATCATCCAGGATTAATGTGCCATCAGCTAGACTTTTTAGTTTGGTTAATTACATTGC
CATGTGTTTTGTTGTGTAGTGCTCCGTCCATTTCTGCATGGAGGAGTCGTCCCTTTAAAC
TAGACTTTCGTAAGTTTGTGTATTATGTTTGGAACAGTTTAATTTGGAACTACCCTTTTG
CATCCATCCATTCCAATCGGCTGAGTTGTTTGATTTTATTTCTCTTGTTCCATTTATATT
CAGATGAAATGAAATAAGACCCCAGAGAAACTAGTATTTAATCTCTTTCTTCAGCTAACA
AGTATTTAATCTCTGCAATTAACGACATATGCCTTGAGCGATTACATTCCCTTTCGCCAA
TCATTTTGACCGGTCCAACTCAACCATAATCAGTTTAGTGGTCCAAATTGGCCATTGTGT
CGCTAGATGAATTCCTTCTGTGCGTACTTCAAGTTCAGCTTGAAGAGCTTTGTCGCATGT
ACGCAACTCTCTGCAGGCTGGAAAAAGTAATAACATTTTTTTTTTTGAAAAGGAGGAACC
ATGTCCCCGGCCTCTGCATCAATCGATGCATGCAGCCATATTATTAAGAAATTCAAAGGA
ACAACATAGGTCCAGAGAGGTTTGTAAGTGTGAAATAAAATTTGAAGATAATGAAATCTT
AAAAAATTGCCACACCCGGCGTAACTAATATCAGACTACGATGCCTATACACCTAGTCTA
TTACTAGCACGCCATCCAAATCGGTTGAAGATAACCAGTGCGGCCATTTTTCATCGGTTG
CACCCAGTATCCATAAGCTCCCTGGAGTCCACATGACTGAGTAATGACCATGTACGGATC
CAAGAGGTTGCTCTGTATATGACCTGCAAAAAGTTATGAAATCTCTTGCCATTAAAAATG
ATGTCATTCCTGGTATTCCATATAGCCCAGAATAAAACAGATATCCCAATTCTAATAAGT
TTTGCAATTTTAACGTCCACTCCATTGAGCCACGTTGTAAATATTGAGCCCATACAAGTA
GGTGGGATCACATCAAAAGCTATATGAACAGTGCGCCAAAGTAGTTTTGCCAAAGGACAT
TCCAAGATCAAGTGTCTTATTGTTTCATTTTGATCACAATAACAACAATTAGATCTACCT
CTCCAGCTACGTTTAATTAAGTTATCTTTGGTTAATACCACACCTTTGTGTAGAAACCAC
ATAATTTTTTTAATCCATAGAGGTACTTTGATATTCCAGATATGTACTGATCTGGATACT
GGTCCTATGTTGATCACATCCATGTACATGGACTTTACTGAGAATACACCAGTGACAGAT
AAAGTCCAACGAACACTATCTGGTTGATGAGATAATTGAACCTGCATATTTCTTCTAACC
AGATGCAACCATGCCTCCCAGCGTACTCCTACTAAAGCTCGCCTGAATTGCATATTAAGA
GGTATTGATTGTAAAACTGTGGACACATAGTCCTATTTACGTTGCGTAATATTATAGAGC
A