| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
 |
 |
 |
Predicted Genes from contig_37332
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_52168 |
3 |
3980 bp |
MLOC_52168.2 |
Available |
Available |
LOC_Os06g11370.1, FRAME:-2, EVALUE:5e-116, 13106.m01231 protein mediator of RNA polymerase II transcription subunit 6, putative, expressed |
CDS Structure of MLOC_52168
Contig Sequence (5971 bp)
>contig_37332 5971 assembly3_WGSMorex_rbca.fasta
CCCTAGGACTATAACCCCATCAAGGTGCCTTAGGACCAGCTGATGTCTATCAAGCCGTTT
TCAAGAGTGACCGATGGTTCTACTGTTCCCCTGGGGCGAGTCCGCCTACCTGTGACCTTC
GGCACGTGCAACAACTATCACACCGAGTTCATTGACTTCAACATAGCGCACATCGGCCTA
CCGTACAACGCAGCCCTGGGATAGCCGGGACTGGCCAAGTTCATGGCGGTACCGCACCAT
GGTTATAACGTCCACGAGACGCCTGGTTGCAGCGGCATCATCACCATCGCCTGCGACGAA
AAGGATGCGGCCCGTTCCCTGGAGCGTGCCTACAAAGCGGTTGCGACCGAGCATTCGGAT
GGCGAGGGAGATGTTAGGCCTCGCGAGGCAGCGCCCCCAAGGAAGAAGCAGTTGTTGTCC
GCCCCAGGCCCCGCCAAGGCGAGGAATGTGTCGTCCGATCGAAAGTAAATCTGTGCCTCC
ACGCAAAACAAATATGTGTCTATCATGGAAGAGAAAAAACACATTTTTTTCTTTTTCATG
AGGCACAGTCGTGCCTCTTGCGAAACCAAGTCTATGACTCAATGAGAACAAATATCTTTC
TTCCACAAAAGAAATAAAACATCTTTTTCCCTTTTTCGAGAGGCGTGATTGTATCTCTAG
TGGAGTCGAAGCAAATGTCTCTCACTATAGAAAAAAAATACATATCTTTTGAATGTCTTC
TGCGAAAGTAAGTCTGTGCCTTCATAAAAAGCAAATATGTGTCTCATGCAAAAAAAAAAC
ACTTTTACACGCAAAAAGGGATTGAAAAGGCTGGACAAAGCAAAAAACCAGGAAAAAACA
TCTAAAACCCAAAAAACTTATATAAATAATAATAATAATAATAATAATAATAATAATAAA
TTACAAGGAAGCGTCCAACATATAACACATGACGACGGCTGAGAGATTGCCAAGTGGCAC
ATGACAACACTCTCAGCGTGTGTCAAGTAGAGCATGGTTAATAATACAACCAACAATCGG
TTATAAGGAGTTGTCATGTCATATAGAGTCAATCTAATAGCCGGCATATACAATAGTAAA
TTTTAAATGTGTATTATTTTAGTAATAGTTGACCCAACTTACAATCTCACAAAGCGTTTT
GGGTTTCTTGTTGCAGATACGAAGAGTCAGCTTCTCTTTTCTCTCCTCCTCTCTCTCCTC
CAACTAAGCAAGAATATAATATTCTAATCCTTATAGCCTGTTTATGTCACCTTATTGTAC
TTGCTCGTAGAGCGCTACCCCTCAGTTAGTTGCTCATACCACGAATCCTAGAGTTGCCGT
ATATAGCATGATGTCAGCGGCTGCTCTGACCGGTGGAACCAGAAAATCTATAACGAAGTT
GGACACTAGACAAACTTCCGTTTCATGTGAGGAGGCTGTCTGCTGAATGGGCAGAATTTT
GCAAGCCGAAACGAACGGTCCAAGCTGCGCAAACAGAGAGGTGCAGGTGTCCGTCCACCG
GTGGGAGTGATTAAAGTGAACACGAACGCGGCGTTTTTCCAGCAATGTCGACGTAGTTTT
TGCTGCGGCAGGATCGATCCCAGAAGCTGCGGACGCCCTGCATGCTGATGAAACAATTGC
CCTCCGTCACTCCGCGAAGCTTGACATTAGAAGCCTGGTACTCAAATAGGACCTCGCCAA
CAATGCGTATGATAATGTGAGCCTGGGTCAGCTTTCCAGGGACATCGACTTTCTTCTGGG
CACGAGTTTTATCCAGTACATAAAGTGTCCAGTATAGCCCCAGAGCATCTAACAAAGTAA
CAAGCCTCTCATTTTCTCAGCAGCTTTGGATGTGGGTGGAGCGGCGATGACCATCATGTA
TGAGTCTATTGATGTATCAAGTGCTGTGAGCAGCGATATTTGCTGTGAGCATGATGTATC
GGGAGTTTTAAAACCACAAACTGGCCTTAAATGTCAAGGATCAAGTCGAAGTGTACATTC
AGACAATGGTCTGCACCTTCCCAGCTCAGGAATTTGCAAATCTCTACTTACGATCTGCAA
TACATGACATTATCGTGCCAGTCGGTTTACTTGATCGACGGTACAATCTCATTGAAATCT
TGGTCTTTTTGCTGGCCCTTGATCAATGATGGGGTCGATTGCAGGAGGCAATGCCTCTGA
GGCCAACAGATCGTCTGGCCCTTTCTCTTGTTCTGTTGGGACATAACCATCCGGAAAGGG
TGGAGGGGGAGGAGCAGGAGGCAGCTGCGAAGAAATGTGTCAGAAGTCTGGAGTAATTAG
CAAATGGTTGACAAGGCAGGTTGATCAACACACTTGGAGTAAGATACAGCAGCAGAACTC
GCATGCAGTTCGAAAAAACGCTGTTAGTCCATTATGCATCAGACACAACTTTCTTGGGGG
CATACACGGTGCATCAGTACATCTCATGTGCCTACGTATGTCTCCCCAACTTTCTTTTGT
GTAACGGCCACCATCATGACCAAGTAACAGGAAATAAGTTTTGCTAACTAAAAATGGTGT
TACCTTCCGTTGCAAAGACATGAGGATGTGATCAACTCGTTTCAACTCCTTTAAGTCAAT
TGTTTCCTTCTGGGCCTTTGATTCAGAAGCTGCCGCATCAGCCTCTGTTTCAGCTGTAAA
TAACAAAACAAAAATTCCAGTTATGCTACTTCTGTTTTGCAACTTGCAGTAGATAAAAAA
AATGTAACATAAGAAGAAGCAACATAGTAAGTTCTGATGTACAACAGCGGCAAGGAACCA
ATTTCCTGCAGGTGATCTTGCATGAACAACACCAAAGTGCTAACTATCATTTTACAGATT
ATCAAATTTCGAGGTAAGTAGTAGTTTAATCAACAATCTGTAATGCTAGATTTTATTTTG
TTCCAAACAGTGAGTAAGTTCACATGGACTCAAAACTTTATCTGCTACTCCCTCTGTCCG
ATGATACAAAAGCGTTTTTGACACTAGTCAAAAACGCTCTTATATTATGGGACGGAGGGA
GTAATTTCCAACCCACAAACAAAAACTGATTTCTTTGAACATTTAAGTAAGCATATTAAC
ATAGAGAAAAATAAATATAAGAAAACTGGCAACAACAAAATAATGAATTATCTCTACTAT
TAAAGAAGAGTTTGTTGGTTTCACTTCCACCCCTCCCACCGATTTTTTTTTCAAAAACAT
GCGATGACTCCCATTAAGTTTTTTCCGAACTGACTCCCAGCTCCTTTCTGGGAAAAGAAA
TACTGTGCAAAACAATCAACAGAAATAAAATAAATTGCCAATAGCAAGAAATCCCTTGCA
AGCAAATAACAAAAATCAACTCACGTAGTTGTACATACACAATCTCAATCACATCATATC
TTTCCTTACCTTTGCCGATGGATTCGATCCGCACAGCATATCTCAATCTCAACCAAATAA
AAAAATTCCTACACTGAACCACTAGAATAAAGTTGTCCCCGTTGCAACGCGTGGGTATTT
AGCTAGTATTCCATTTAATTCTTGGAGCTTTACTTTTAGAAACCCAAAAAAATGCCTACA
TATAATTTTTTACCTGACTAAACTCATAATTTTGCAAAATGTACGACTAAAAGTTGCAAA
AGACCTACACCTATGTCTCAAAATCTCGTTCACAATCATTAAAAAAAAAAAAAAAAAAGC
ATTCGGCCTCTCTGCTGCAAACACACCGGCTATAGTCGCAAATGCCATAGCATAATAAAC
GGCTATCACACGCTGATCAGTTCTCACTGCAGTTGGAGAACCATTTAATAGAAACCAAAT
TCCCCAGAATCCTGGATCCTGCTCGTACCAGGATTTCAGAAATTGGTAGGTTTTGGAGAA
TAAGAGCGCCTTAATCAAGGCTAGAAACTGAAGCTTGACTTAAGGACATAACAAAAATGG
ACTTTATTACTGAGTAAATAGAGCAGCATCTGGTTTCCTAGTAAGCTGATATTCAGAAAA
TACGAACTCCTAGCCCAGTAAAAACAGAGTAATAAGTAATCTTTGGAGAGAAAAGGTGAA
TTGGCTATTTGAAATTAGTTTAACCATGGAAATCTGTCAAGAAACCAAAAAGGAACTTGG
ATTATTTTTCTCACAGAGAAAATAAGGAATTAAATTCAGGCCCGCTGAAAAGAAAATAGA
GATGACTTTAGAGTTACCATCTTTTAGGTGGACCTGCTGATTGTGAAACTTTGCTACTAG
GTGTAAATCTCAATTTCTCGATAAAATGCATATGGCTTGTTATTTTTGTGAACCTAATGA
TGAACCAATTACTGCATTATGCTGACCAAATGTGCCACTGCTTGTTAGTTTCATTTTTCC
AGTCACGAAGAACAACTACAATGCATAAGATCAGTTGAATGTTTAATACAAGTATATATT
TCGCAGGCAATACAACAACTGTCCAAAACTACACCATGCATAAGTGATGTTTAATCAAGT
AAGAAAAAAGTAAAAGAAGAGGTAAGAAGTAGATAAGATGTGAAGACCATACCATTACCA
ATCTTCTCCAACTTTGAGCATGCCGTAGAAAATGCTTTTGAAATATGATGCATAGCCCTG
CTCTGAAATGTTACAGAAACAGACAAGGGGGGGAATTAATCAATCTAACACTCTGCAACT
CAGTGATTGGCAAAATCTCTGAAAAACTGTGCGAATGAAAAAGCTCAACAATTATATCAC
ATATTCACACTGTCATCTTTCTTAGTCAGCGACCTATAAAACCTCACTGCAGAATTTCTG
GAAAAAATAGAATAAATGGCTCGGGAGCTTTACTATGCGGGAGGCGAAAACGCTGCCAAG
CAGGGGCGCCTGGTAGATGGAGCCGTCGAGGATGTAGTAGGCGAGCAAGGGGTCGGCCTT
CTCGGAGTTGGACCTTTTCTGCTTGCGCATCACGAACAGGTGCGGCTCCATCACTTCGCT
CAGCACGTACTCCAACCCGGTCATCTTCCTGCGACCACCACAACGAACGGAGCAAAAATA
GTGAACCTCGGTTCCAGCGAATTGGGTAGCAAGAGAGGAGGAGCCGGGAGGCGCGGGGGC
TAGGGTTTCACGTGAGCTGGGACATGTCGAGGGGGTGGATTTGGCGCGAGCGGAGGGACT
CGTTGTTGCAGGTGATGTCGTAGAAGGGGGAGAGGGCGAAGTAGTCGAAGACGAGGTTGC
GGTCCAGCGGGTAGGTGTTGAGCCACAGCTGGTCGCGGAAGCAGATCCCCGTCATGTCCG
TCCCCGGCGGGGGCGGGAGCGCCGCCGGGCCGTCGGCCGGAGGCGGGGGCGGGAGCGGCG
TCGCCGCCATCGCCTGGCCACAAAATCTCCCAAGGGGGCACCGCCGAGGTGCAGCTATGC
GAAGGTGTTGCGGGATCTGGGTCGCTGGCTCGCCGCTGCTGTGTGCCGGTAGGGTCGGGG
CCTTGTGGGTCGGCTTCGGCCCACTCGCCGAGTCGCGCCGCTGCTGTGTGGGCGGAGGCT
GATGCGCGTGCCGGTGGCCGGTGGCTGGCACCGCGCCGGACGGCGGATGTTTTGACGGTG
CCCGGCGGCGGCTGCTCCGCTACTGAGCGGTGCGTCGCTGCGTGCCGTGGGCTGCTGTCG
TGCTGCGTGCTGTGTGGCGTGCTGTGAGCGGTCAGGGTGTGGGCTGGGCCTACGTATAAT
TTCTCTCTCTCTCCAGCGCTGGGCAGGCCACGGCCCAGGTTGACCCTCACATATTTTCGT
CTGTGGTTGGTTGTATATTCGACGAAATCAGGGAGCAGGAGTACTTCTTCATGAGCGTTT
CAATGGTCACTCTCAAATGATGTAATTTGAGGTGTTCTCAGCCGCCGACACGTGTTGCGT
TTTTGATTTTTTTCAAAAAAAATTCATTTTCTGCACAAGTTTTAAAAAAGAATGTTTTCT
TGGAGTTTTTTCGTTGTTTCGGGTTTCTACGTGTTGATTTTTTACACATTTGGATGAAAC
AACAAATTCGTCCAGACTCTTGGTAGAGTCT
