| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
 |
 |
No map location |
Predicted Genes from contig_37290
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_52112 |
2 |
1395 bp |
MLOC_52112.2 |
Available |
Available |
LOC_Os01g07880.1, FRAME:-3, EVALUE:1e-32, 13101.m00812 protein transcription factor HY5, putative, expressed |
| MLOC_52111 |
1 |
897 bp |
MLOC_52111.1 |
Available |
Available |
LOC_Os01g07870.1, FRAME:+1, EVALUE:1e-60, 13101.m00811 protein ABC transporter family protein, putative, expressed |
CDS Structure of MLOC_52112
CDS Structure of MLOC_52111
Contig Sequence (5017 bp)
>contig_37290 5017 assembly3_WGSMorex_rbca.fasta
GATACATTCATATCTAGACAAATCTAANNNNAGAATTTTGGGACGGAGGGAGTAGTCGTG
AACCTGTTGTTAAGTTGTAGTCTGAATCTGTTGCTCCATTTCAGGCCTTGGATAACTGTC
AGCTGGGAGATGAGGTCAGGAAGAAGGAGCTGAAACTTGACTCACCAGGTCTGATATGTG
AAATGTTTATTTTCAGTCATGCAGTTGAAAAGTCTGAAACTTAATTTGCTCATCTTTTGC
ACACTTCCCAATATCAGCTCTTCTCTTCCAAGATTTGAAAACTATATAACATGTGTCACT
GCTTCTGTAAACTAAAAAATCATGTTATTTTCCCTTGCAGTGATCGAGAACGGAGAGAAC
TGGAGCGTGGGCCAGCGCCAGCTTGTCTGTCTTGGAAGGGTGATCCTGAAACGGACCAAG
ATACTTGTTCTGGACGAGGCCACTGCTTCAGTGGATACCGCGACAGACAACATGATTCAG
AAAACACTACGCGAGAATTTCTCGGAGGCGACGGTCATCACGATTGCGCATCGAATCACC
TCGGTCCTTGACAGCGACATGGTCTTGCTCCTCGACAACGGTCAGCCATCAGCCCTTCAA
AACAAACCGCAATCGCGCCTTGTTAATTCTTCTAACCCCATGTGCTTGGCATATCTGTTG
GTCTGACAAACACCGTGCTAACCTATGCAGGTGTGGCCGTGGAGCGTGACACGCCAGCCA
AGCTGCTGGAGAACAAATCGTCTCTCTTCTCAAAGCTCGTAGCAGAGTACACGATGAGAG
CGACGCATACATAGCCAACGAGTAGATCCTCCAGGCATTCTTCCATGCCGTTGAGGCTTC
CTGAATGAGTCTGGCCGTCGATAATGCCGAAAAATTACTGGTAGATGTGATGTGAAGTAC
TCTCGATCTACCACGGTGTTGGTGCTACTAATACTCGCACGGTAACTTCACATGTTTTGA
AGGATAAAGCTGAAAAAGTGGTTGAAAGTTTAGTGTTTGAAGAAAGTAGTTAGTTAAGGA
TAGAAAAAACTGAACCCTGGTAGTAGCCACTTACTTTACGGCGGACCATACACGCGGAAA
AAGTTTTGGGACTTGGTAATTTGATGTGCTGTCTGATGCCCGGATAAATAAATGAAGTGG
TTCAGTTTAGCACTGTTATACCAGGGGCCCCTCCCTGACTGTTCCAGTTTGATATTGTGG
TTCTGTGTTGGGTTGGGTACAAGAATGCCAAGCATGAACAGAACAGTCGTTACGTGTTCT
TGTAAATTCTTCATTTTTGCCCCCTCTGCGTATTGCAAGTCACAGCTATATGTGAAGGCT
GTGTTTTATTTGTAAAAGAAGTACATATTCCTCACTGTGCATGTTGATGTTATCCACCAC
GCAATTGTGAATCATATAGCTCCTCAGCTGTTCTGAATTCAGTGGTGAATTCGTCAGTGA
TGGCTTGCATTTTCAGGACAGCTTTTCTTTGACTAAGCACAGTGAGCGCCTTTGGCTGAT
TCGTTTCTTTCTAACCTTTTTGTCTATGATGAAAGTTCAGCAAATAATACAAATTATGCT
GTTTCTCATCAGCTGCTGTACTCCGACTCTCTAGGCGGCCATGCCTACTTCGGCTTCAGG
AGATAAATATGAATTCGAACTGAAATCCATCTTTTGAAGCTCTTTTCCTGCGCTTTCCAA
CACAGTTTCAGCGACCAGGTTTGCGAAGAAGCCGATTGCAGTACTGGAGAAGAGAAGAGA
AGGCAGTACAATACACAACCAATGTTCACATAGATCAACCTCGCTAACACCAAGCTACAA
TGGACATGGTACACACAACAGTGACAGTGAGACATCCTTCTCAGCAAACCGTGAAAAAAA
AAGGTGCAAAAGACAATACGAGCGTCAAACTGCGGCGGCAAACAACAACAGCAGTGTTCC
TAACAATGGTCAGATGAGCAGGCGTTCGGTTCCTAGCAAGCAGCAACCATGGTCGCAGCT
CTTACTACTACTAGCTCTTGCCGAAGTGGTGGTGGTGCTTCTTGACGCCGTCTCCCCCCT
TGCCGCCGCCGCCGCTCGGCTTCTTCCCGGCGTGCGCCGTCGTGTTCTTGAGTATCTGCA
CGCAAGGAGACATGCAAAGATTCAGTCAGGATCGCCATGGCCGCTGAGAGTGAGACAATT
CTGGTGGGAGGATCTGGGCTAGGCTGGATATGGTATGGTACCTGGCGGAGCGTGTTGTTC
TCGTTCTGGAGGGTGGAGACCTTCTGCTCGAGCTCGGCATTGCGGAGCTCGAGGTCCTTG
GCCTTGACCTCCAGCTCCGTCATGTAGGCCTTCTTCCGCTCCCGGGCCTGCTGCGCCGAC
ACGCGGTTCCGCAGCAGCCGCTTCAGCCGGTTCTGCTCCTTGTCCCCGGCGGCGCGCCCG
CGCTTCTTCCCCGCCGGGGCCTGCCCTCCCCCCGCCGCCGCCAGCTGCAGCTGCTTGCCG
TCCCCCGCGCCGGACGACGCCGACCCGCCGCCGCCGCCCATCTCCGGCACCCGCCGTATC
TCCTCGTCGCTCTCCGCGCCTGCCACCACACGCACACACACAACGTAGACACGCGTCGTC
AGTCAGCGTCTCCAGCCGGATTCAGTCAGCGGAGCAAGGGAGCGGGGTGGACGGAGAGAG
GGTGGGTAGGGTACCTCCTTCCTTGAGGTTGTTGGGGCCGGAGCTGGAGGAGCGGTCGCT
GCTGGACGGCAGCGAGCTGGTGGTGCTCGTCTTGGCCTGCTGCTTATCCTGCTCCTGCTC
CTGCGCCGCCATCGCTCCTCCCCGCGTCCTCCTCAAGCTCCAAGAACAGACGCAGATCGA
GCTAGATCTCCCTGAATCTCCCGCCTCGCCACCACCTTGCTGCCGCCGCCGCCGCCGCTC
CGACGAGAAAAGAAAAACAAATCCTGACACTGCCGAGAACGAAGGAGGGAAAAAAACACA
GATGCAGATCGGACGAGAGGGAGGGAGACACGGGAAGGGAACGGGGAGGAGAGAGAAAGG
GAGGCCGGCCGCGTGCGGGGGTCAGGTCAGGTCAGAGACTGGGGAGAGAGAAAGAGGGGG
AGGGAGAAATGGCGAGGCGAGGTCGGGCGGGTCGGTGGGGGCTTTCGGATGAGACGCGAT
CCCCGCCGTGCACGGCACACCCATCGGACGGCGGCGGCGCGGGGAGCGTGGCGCTGCGTG
GCGCCATGAACGCGCCCGCCGCATCTGACGGTGGCCGCCTCGGGAGCGTGGCCGCGCGCC
CGTCCATCCGATCCCATTCCCCACGCCTGCCTTCCTTCCTTCCTTCCTTTTTTTCTTTTT
CCGTTCGTTCGAGACAAAACCCAACACGTGACAAATCTCGAGCCGCTTTGCTTTTTTTGC
CACAGGACCCGGCTGCGCTGCATATTCGCAGAATAACGTACGTGACGCGTGGGAGAGCAC
ACGGCTGGCGGGAATGATGCTATTTGCGTGCGTTTTGTGGACTCGGCCTAACCCGCTTTC
TCGTCACCGTGTGAATCCCGCATACGACGTGACGGAGGAAGAAAAGGAGTCGGTGTCGTT
TTTATCGCTTTTGTGAAACGCATGCATGTGGGTGTTTGATCTGTCTGAAGCGATGAAGGA
ACATTTCGAGGTTTTTGTGTTGATCCGATGTTTAAGGCCAAAATCATGAATTTAGCAAAT
ATGCTGCGAGAGATAACGATTCTTAGGGATAGGAGTGTGGCGGCAATATAATGTGTAAAT
ATGGTATTTCGCAAAAAAATGGATAAGCTGTTGGGGAACCGTCCTCACCCTGCAAGTGAT
CCTTCAGCTCGTTGAAGATGGCATCGACATCGTGACAGATGCGGTTGTAGATCACGTTGT
TCCTCGACTTTTAGATAACCCAAAAGAACGATAGCGGCGCGGATGATACCATGACGTAGC
AAAGATGACGACAATATAAGGCGAATTACTACTCTTTTCGTTCGAAATTATTTATCGCAC
AAATAAATAAAGATAAATATATCTAAAACTAAAATACATCTAAATGCATTCATTTTTATA
AAAGTATTTTTGAACGGATGAAGTACATAGTATTTATGTCAAAAAAAAATATTACACTCA
CTCCTATATCTAAATATAGTTTTAGTTCTACATACATTGATTCGCGGCGAGTAAATCGGG
AAAGAGGGAGTATAAACAGAAACATCTCATGAAACACGTGCATTGCACATACACATACAC
TTGAACGTCCAAATGAGGACACCTATTTTTCTTGATGCCCATAACAAGTATGTGAGTTAT
TATAAAAGATAAAATCTAGTGGCACGTATAACACCAATCCATTATGCATCTCTGCCGGTC
TTAATTTCCTTCTTGAGAGGCCATCTAGCTAGTCTAATCTCAAGAGTCTAAGACATGTGA
CATCCCAATGCATTTTTGAGGCATGTACTTCTCATATCGTATCACAGATAGCCAAAAGCG
TTTAGAGCAAAATGTTCTTAATCGGGAAGACCTTTGACTTAATACATGCTCCTCATGACA
ATCATAAACAATAATTAGGGTGTCCCCTCTTTTAGGCTGGTTGTAACGGTAGTATCATAT
ACTAGTATCATGCATATGATACTAGTCTATGCTACCACATCCGTAATGCATAATATCATA
TGTTAGTATCATAGGATAGTTCATTTATTGACATGCAAGACACATAGTAGCACANNNNNN
NNNNNNNNACAGTATCATGATATGATACTCAACCATCTTTTTTTTCATTTAATTTTGTGC
CACCTCATCAAAATTGTCTAGTTGACATGAATGATAATACATATGATACTTCCATTACTG
GCAACCTAATGCAAGGGAAAGGGTGTCCTCATAGATTATTCATGACAGCATGAAAAATTC
AATAATGATAAGGTTGTCCGTAATGGGAGTATCATAGNNNNNNNNNNNNNNNNNAACTAG
GCAATTTTGATGAGGTGACATAGAATTAAATGAAGAAAGAGAGGGTTGAGTATTATATCA
TGATACCGTACCATATTAAATGTTGTGCTATTATGTG
