Map Locations of contig_37283 (9679 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_37283

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_52098 1 207 bp AK360487 Available Available None
MLOC_52097 2 2289 bp MLOC_52097.1 Available Available LOC_Os04g57940.1, FRAME:+3, EVALUE:7e-142, 13104.m06079 protein pentatricopeptide, putative, expressed





CDS Structure of MLOC_52098






CDS Structure of MLOC_52097






Contig Sequence (9679 bp)

>contig_37283 9679 assembly3_WGSMorex_rbca.fasta
GCGCGCACGCGCACGCGCGGCAGCTCCACGCCCTCGCCGTCCGGCTCGGCTTCGAGTCCA
ACGTCTTCCTGTTGAATGCATTCCTCGCTGCCATGGTCCGGCACGAGCGGCAACGGCACG
CGGTGCGGCTGTTCGAGTGGGCCTCCTGTCACCGCGACGTCGTCTCGTGGAACACGCTGC
TCGCCGGGCTCGCGCGCCGCTCGCGCACGCGCTTGTGGATTCTCTGGCGGAGGATGGCCC
GGGAGTGCGCCGGGGCCGACGGGTTCTCGTTCAGCACCGTGCTCTCGGGGCTGACGGCGG
ACGCCGACATGGTGAGCGGCTTGCAGGTCCACGGGCAGCTTGTCAAGAGCGGCTTGGGTG
ACGACGTCTGCGTGGGCAACTCCCTGGTGGAGATGTACGTGAAGAGCGGCGCTCTGGAGT
CCGGCACCAGAGCGTTCGACGAGATGCCCCGGAGAGACGTCGTGTCGTGGACGGAGATGG
CCGCCGGTTGGCTGCACTGCGGCGAGCCTGTCAAGGCCATCGGAGTCCTCGGCCCCATGA
TGATCGAAGGAATTAGGCCGAACAACTACACATTGGCGACGGCAGCCAACGCATGCGCGA
CACTCACCGGTCCGGGCGAAGGGCGCAAGGTCCATGGGTACGCCATCAGACTAGGAGAGG
GCTCCGACATCGGCGTGAACAACGCGCTCATCGACATGTACTCCAAGTGCGGCCTGGTGG
ACACCGCGCACAGGGTATTCCAGTCGATGCGGCAGCGAGCCGTCATATCCTGGACAGCGA
TGATCATGGGGTTCGCGCGGAACGGGCAGGCTCGGGATGCAGTGAAGGTGTTCGACGACA
TGCTTCTCGAAGGCGTCAAGCCGAACCAAGTCACATTCCTCTGTGTTCTCCATGCCTGCA
GCCAAGGCGGGTTCGTGGAGGAAGCCTGGATATACTTCAGAGCCATGGCAGACAAGTTCA
GCGTCGAGCCCGGCGAGGACCACTACGCCTGCATGGTCGATCTCCTCGGGAAAGCAGGCC
ATATAGAGGACGCCGAGGAGCTGATATCGCGGATGCCGTTCCGCCCCGGGGTTCTGGTCT
GGCAGGGGCTGCTCGGTGCTTGTCAGCTCCATGGCAATGAGGCCGCAGCGAAGCGAGCTG
CGGAGCGCGCCCTCGCGCTCGAGAAGGAAGATCCGTCGATGTACCTGCTGCTGTCGAGGA
CCCTCGCTGGTCGGCAGGACTGGGACGGCGCCGGAAGGTCGAGAGGGCTCATGGGAGACA
GGGAAGTCATGAAGCTGCCTGGGTCTACCTGGCTGCAGTCCATGCCTGAGGGTGCCCAGG
CTTGCACTGCGTGAACCATGATTCAAAATGCGCATTTTTCCTGATGGAAACACTTGGATC
ATTTTCTGGACTGAAAGGCTTCAGGCTACAGAGGAAAGCTGGTGTTTCAGTTATCTTAGT
GAATGCCATTTTGGCTTGGATGGAAGTGAATTGACAGTTTTCCTGAATGGACTTCTGCAT
GATCCAACTGGTAAGAGTCTAATGTGACCAACGACCATCCATTCTGCACAGGACAAAACA
ACTATCAATTGGCCATTGGTTAAAATTGAAATAAGTGTACATCCTCATGAATAGATCTTC
ATATATGCTGATTTTTTTTCCATACAATGAAATCCATACATAGTCCTGATCATGTAGGCA
ATTAGTAATTACAGACTAGAGCTCATGGAGGGGGGAAACTCTTCAATATCCAAGCTGTGC
AGCTCAAGCGAATGCCATTTGGCATCCTCTGAAGTGTGAACCATTACAAGAATCTGTCCT
GCAGACCGCAGGCGATGATATCAAGCGACATTTGAGGTCTCCAGGAGAGGCTCGATGTAA
TCCTTGAACTTGGCCTTATTTATCGCGCCTTCTCTTCGGCTCCCTGGCACCTCCTCCCCG
TCCTTGAAGAGGATCAACGCCGGGAGACCGTAAACCTTGTACTTCTCGATAATCTGAGGA
TTCGCGTCATGGTCGATCTTGACAATCTTTAATCTCCCCTCATATTCCTGTTTCATGAAA
AAATGACCCGACTATCAGGGCTTGTGATTCAGATTAAAAACAGGTTTCCCTCCAAAATTC
CTTAGACCACAGAGAGCATTAAAATGTACCCTTAATTTGCTTTCGCTTTTATTCAGAAAA
AGATGAGTGCTTATATGTAATATGACTAATGGAATTTTCATATAGAATTCATCTGTTCTA
TGGTAGCTAAAAATACCAATGGAAGATGCAAGCTACATCTGCCCATTGTCCACCAATCTT
CCATATAAATCTAGGATGGGATGAACCGAATACCTAAGGCTATGGCTAGTTTTATGCAAT
CTAACATAGTGTTGCTGGTATCATCACAACCATGGCCTGTCATACACCGCTCCCTGTGAT
TCCTTATAATGTCTTGGATTTTGCCATTGCTTTTAGCAGCATTTTGGGCTTTTGTTCACT
TGTTATAGACTCACCTGAAGGCAGCTTTACTGTTGTAAGATGCACAAGCTCAAACGGGTT
TGCTGTCAACTGCTGAATTTCTCTTTCTTTTGCTAAAAACATGTAGTTCATACTTTCACA
AACGCTGTGACGGGTCATGTTGCTGGTAACTGTTGAGTTTCCCCTTCTCTTAGGGTACGG
CCATGGAGTTTATGCGTTCACTGTTCGCAGACCTTGCCAGCAACTTACGGGCTACGGCTA
TCATTCATCGACATTATCGCTGCTGCCTAATTCCACCGCAGTTGCTAATTCATATGCCAT
GCATAACACAGCGAAACTGGACTCTGGGTTCTGCTGGTTTCGTGTTTTTCCAATTCTATT
TTCTACACTAGGCGGAACACGACGAAGCATCAGGGGCATTTTTGCAACCTGACCAATCAT
CTACGGCCTCTGTGATTACTTACAGCGATTGGGACTTTGTCATAGCTCTTAGCAAGAATT
TTGGGCATTTGTTCTACTTGTTACAGCCTCACTTGAAGCTTTATTTGCTGTTGTAAGATG
TAGAGCTCAAACCGCAAATGCAGGGCTTGCAGGGAAATGATGAATCCCCCTTTCTTTTAC
CAACAACATGGGGTTCATACATCCACAAACGCCGTGGCAGGTCAGGTTGCTGGTAAGTGC
CGAGTTTCCCCTTCTTTGCTAAGTGTCTGACGGACCTTGCCAAGGATTTGCGGACATTAG
TTCCTACGCCACTCATAATCTAACTCATCGAAACTGGACTTGCGTGCTCTGTGTGTGTGG
TTTGGTTTGGTGTTGCGCGGGCAATTCTCAACGGGACGAACACGACGAGGCACCAGGGGC
GTGTTCTATCAAGCAGGAGAGCCGTGCGTACCTCGGAGGCCCAGTCGACGACGGGCGAGA
CGAGGCGGCAGGGCCCGCACCAGTCGGCGACGAAGTCGACGAGCACGGGAAGGTCCGACT
GCATGACCTCGGCCTCGAACTCGCCCTCCCCGACGAGCTTCACCGCCCCGCGGCACCTCA
CGCGCGCGCGCGCCAGGGCGGGCGCGCGGCAGAGGAGGGCCGAGGACGGCCCCGCCGTCC
GAGGGAGCGCGACGGCGAAAGGGAGCCGGCGGGAGTAGGAGGAGAAGGAGAGGGGGTGAG
GGGGCGCGAGGGTGGACGCGGTGGTGCTCGGCGCGGATGCCATGGGAGAGGGAGGAGCGC
AGCACGATGCCGATGAGGCGGAATCTTCTGGAAGGTGCCACCTGGCGATGACAGCATGGG
CGGGTTTGTGAGGCGCGCAATACAATCCAATCCAGCCCACGGCCTTGTTCGGCCTGGTCT
ATCCGCTACACGCATTTTCGTGTGGCCCATGTATAACACCGCAAGTAGGTTTTCTCGTCC
AAATATCAATCAATCAATTAAAAAAAAAAAAAGCAAAGTGGCGCCATTTTCTCCTTGGGT
GGTGTCTCCTCGTCCATCTCAGTCAGATGATAGCAAAAATTCTACACTTATACTCCCTCC
GTTCCTAAATNNNNGACCTTTTAGAGATTACACTATAGACCAGATACGGAGCAAAATGAA
TGAATCTATATCCTAAAATATGACTATATACATCCGTATATAGTTTATAGTGAAATTTCT
AAAAGGTCTTATATTTAAGAACGGAGGTAGTATACGGGATCGGCATAAAGGCTGTTTCTT
ACGGACTCCTTTACCATAAACCCCTTCCCTCCTCCCCTGATTTTCACTCCTTCCATCAAT
CTTCAATCATAATTTGACATTTCAGTCCGTATCATATATCCTGTAACAACTGTAGCTAAG
TTTAGCATTGCCACTTCAGGCAAGGCAAATCATTATGAGTGAGGGTGTTCGCAGTAATAA
ATTTTGCGATTTACAGTGCCTTTCCGATTCTTCAATGCACCAGAACTGAACATGCACATG
CACGGTAGCCCCTGATAGTCGTTCCTTCTGCTCTAATGGAGATCCCTGCCATCCACCGCA
GCTCCTCCAGTGCCTGCAGCCCTGCATCCATCCATATTCACGTACTACCCACTAAACCAC
CGCCAATAACACTCACATGATGGTGCCGCCTGCTCCATTACAAACCGTGATAAAACAGCA
CCAATTCTGAAGATCTGACACTCAAACACAAAACATAGCCGAAAGATCAGTCGAGGAAAT
AAGGGAAACTGCGGCAATCCATACATAAATATCAATCTGATACATACACCGGGTGTTCGT
CTTAATAAATATCTCACTTATTAAAAGATACAGCAAATCAAACCATGAAAAGTTGGCAAC
GGAAATTTAAGAGGCAAACCATTACAAGTTTATTCTGAAACAGCACACATGAAAAGTAAG
CACACACACACGCATAATGCAATCAGATGATTCCCGACGAGCAGCCTTCTCCAAGAATCG
CACTCTCAAGTGGCTCTACTCATCTTCACCAGCACCGTTTATTTCCTGTCCATTGTGAGT
TACTGCAGGTCCGTTTGGGTGTCCAGAAAGTGCTTCTTTGATAGCAGTTGGGTCGCAGTT
ACCAATAAGCTCAAGACGTTTGAGGCGTGGAAGGCGGCTGACTCCGTGAATTGATTTCAT
CTCTCTGAAGTTCCAGACAATCTTCTCAATCTTGGGGGTCACGTGGAAGCTGATGTCTGT
AATGTCTGCTCCTTCTATGAGAATAAACTCAAGATTTTTGAATGCTCCTTCCTCAAGAGT
CAACTTGGTTTGGACATATGACTTGTGCCGGAGCCTGAGACAGCGCAACCCACTGAGCTC
GCCAAGGGGTACCATGTCTTCTTCTCCCAAATGAGTGTCACACAGAGTTAACTTTGCGAG
TTTGTGGAGCTCCCTGATCCAACGAGGCAATCCTCCCCTGATGCCACAAAGGTTTAGGCT
TTGAAGATGCTTTGGAGGTGAGAATGCTATAGGCTCTGCTGCATTAATGTCTATAATCTC
ATGGTCATCTGTTCTTTCCACACGGAGTGAGAGAGAGCGGAGGCTCTGGTTCAGCCTCTC
GATTGCCTGGAGCAAGTGCTTGAAATTCTCTCCGTTGCTCTGGAGGACAACACCTAACTT
TCTAAGCTGCAGTAGCTTCCCAATCTCAGTCAGCCGGTCTTCTTTGCCAGAAACATCAAC
ATGGCACAGTATCTGCAGATTTGTCGCCTTATCAATTCCACGAGGCATGCACACCGTGGA
AAATGACTCTATGTCTTCGTTTGGGTGTTGGGTGCACCCAGCAAGCATGTTCTTTAGCAT
TGGAAGCACTACAGCCTTTGTAGCAAATGATGTTACAGCTGTTTCCCGAATGTCCAGTGT
TTCCAACTGTTGAAGATACTCTATCTTCTTGGGCAATTTGGTAATCTTAGTCCTCCGAAG
GTTCAGATATCTTAGCTGAAATATCTCGCAGATGTTGTCCACATGATGATCCTTCAAACC
ATCGAAGTCCTCGAGATCCAGCACTCTAAGCAACCCCAGCCCAGCAAATGAAGGCAGTGT
TTCAAGGAACTTGGTAAGGTCATCCAAGGTTTGACCATCTTCACTATTAGTTGAGTGCTT
GCGAATGTTCCAACAGGAGCTGGGGCGAGGAGATGCATGAACAGTTCCTAAGACTTGTTG
CAGTTGTCTTCTATCGTGAATGGATATCCGTCGACCGAAATCCGGTTCGAGGTCTGCATC
CACGAACTTCTCCTCCCTGGCAATGTCACTGATGAACTTTGATATTAAACCATTTACTTT
GCAGCTCTTGACCTTTCCTGCAGCACTGATGTCCCTGCGAAGAATAAATCTTTTTGCAAG
GAGCACATCGAAGCAATGCTCAGCTTCATCCTGTGCAGTTGACCCATTTCTGCCAATGAT
CAGGTTCTCAGCTGCCCATCGCCTGACTAAGCTCGTTCTTCTGATATGATCGCCATCATT
TTGGGGGAAGATAGATAGATAGATCAAACAGTTCTTGTAATGGAGAGGAAGGCTGTTGTA
CCAGAACATTAAGGTGTGCCGAATATTGTCAGGAGAGTCACTAGTTAGGTCGTTGCATAG
GCTCTGAAGCTCTTCTATGTTGCTCATAGGATTGACATAGAGAACATGTAAGAATGCCTT
GAGACACAAGAGATCGGGTACACATTTTGATAGAATGGACCAGATAACTGGCTTCAGGAT
ATCATTTTTGGGATTATTCTCAACAAGGGAAACCGCTTTGTCAAAGAAAAAATTGACAAG
AGGCTCGAGAGGCGGGAAGACTTTATTTGGAGAGAAGGAACGGGCTAGAGCATATGAGTG
GGTGATCACAAGAACCACAGAATGAGCACCAGCAGCAGTAGGAGGAAAGGTGGATATAAT
TCGGCGGCATAGTGATTCATCACGGACATCATCAAGAACAATTAAATACCTGGTTTCTTG
CCACTCTTTCAGATCCATCTGCTGAGATGAGACGGCTTTGATTATGTCCTCGAGTACCCA
TTTGGCATGGGTTTCCCCGACTCTCACCCAACATCTGAAACCGAAGTACTGCTTTATCAA
ACTGTCTTCATACACTTTCCGTGCAAGATTCAGATTGTCATCACCTGATGGCTGCTGCAC
AATGGAGATGACTCTGGGATAAGATTCTTTTTTTCTTGGCTTAGTCAAGCACAACAGTTG
CTTATCCTGTCGTGGCATCTCGTCTCTTGACCCAGTAATACACTCCAGCTGAAAACCATG
CAGTGGTATGTTGTCTTCTAGCTGAGCTGACTTCACTGACCTCGAGCGCAGCATCCATCT
CTTGGAGGACGCCGTTGCCAAGCCCGGCCTCCTCTTCATCCTCCTGCGCCTAGACCTCCC
TGAACCTGAGTCTGGCTTTTTTTTAGTCCACTTCTCCACGGGAATTTCCTGCAATGGCAT
CTCATCTTCTGGCCCAGTTAACCGCTTGGCCACCAGCATATCCAGTTGTATGTCCTCTCC
TTGCTCAATTAACCAAGATACTAGCATCTTCGTATCACCCTCCAAAATCTCAGCTGGGCA
CTCATCTTCGCCTAACAAATGTAGGCTCCTGGGGTCTTCCTTTCCGTTGGTGTCCTCCCC
AACTTCCTGAAGTTGATTTTCCCTCCTCACCTGAGTAGTAGGATCGCGGATGCCGTACCT
AACCCACCTTTCGCTCACCTCTTGAGCCCTTACTTTGAGCTCCTTGATCTTTGTGGCGAG
CCGGTGTTGAGCCGGCAGCGACCTGACAATGGGACCAGAAACGTCAAGCCTCATGGACCA
GAAATGATTGAAGATAACGCTTCTGTCAAGTATACTGGCACCGGGACCGAGTTTGTGCAC
ATAGATGTCGACGCAATTTTGGGATTCGCGGGCGACTTCCCGAACCTGCTTCGTCCATAC
CTCCATCTGCCTGTCCGTGCAGTCGCCTTCCACGGAGTTGAGGAGGAATCCATAAACGCT
CTCCATCTCGTCCTTGATGTACTGGATGTCGCTGTGGACGCCTCTCAGCAGCCTTGCCTC
GTCTTCAATGAGCCTGGTGAGGCGTCCCAGTAGCGAGTCTACGGCGCCGTGTGCTAACCC
GATGGCCAGGTCATTCATATCTCACTCAGTACCTACGTCGAACGAACATGAGCCAGCGTG
CAAAGAGAAAGGAGAGAATCTGAACAATACGATTAACGAAAAATGTGAGGATGGAGCAGC
TCTTTACCTTTTCGCCAGATAAACTGAAGCTGCTATCAGTGATCTATATGCTACAACGAT
GATCCAAATTGCAGTGCAGACATCAAGGGAAGGGAACAAAGACGGGATGCTGGGCGAAGC
TTGTGGTTGAGCCCTGTGGTGGTATGGGTAGCCAGATTCAGGATTCCACTCGAGACATAC
TTGCATACAGGGAAGGAGAAGACTATACCGCCTATTCGGTCTTGAGCTAGATTGCAAACC
TGGTGTGTACTATGTACAAAGGATGGCTCCAAAGCATGCTACAATAAATTTCCTGGTACA
TGCCTCTTGCACTACTTTTCCCTCTAATCTGGTGTGTCATGTGTGCTCCCTGCTTTAGTG
TAAAAGCAGAGCTTGGTGATTGATTTAGTTAAGCAAAACAAAAAAGCCGCCATATCCGGT
GGTTGCCACATGCAAATTGCAGCTAGCACACATGGAAGACTGACCGCGTCAATTTTTATA
ACCTACTACTGGTGCGATAATCTGCGATTGAAAAAATGACCACGATTGAGAATGTCGAGG
AGGCGTGCACCCGACAAAGAGGCAAAAGATATCCACTTGTTAGTCGCCGCCCATTGACTG
TATCCACGCAATTGCCGAATCGAGTGAGCTACCTGTCCGATGGCAGAGTAGCGCCGAGGA
CGGCCCCGCCGTGGCGAGCCGAGGGACCGCGGCGGTGGAGAACCTGCAGGAGGAGGAGGA
GGAGAAGCGCGAGCGGAGAGGATGTGGCGGTCTGGCGGAGGGGGCGCGAGGGTGGGAGCG
GCGGTGGCGCTCGGCGCGGACGCCATGAGAGTGGGAGAGCAGCACGATGCGGATGAGGTG
GGCGGGTAGGGGAGGACAAAGAAAGAATGTTCTGGAAAGTGCCACTTGGGCCTTGGCGAT
GACAACACGGGCGGGCGGGTTTGTGTGTGTGATCGTGAGGCGCGCAATCCAGCCCACCAT
CTCCTGGCGCTTCGCTCGGCCTGGTTGGTTTACCCAATTCGCATATTTGTGTCGCCCATG
CATCTATTTATATTTACTAGTAGAAGGCCCGTGCGTTGCCACGGGCTTTTAATTTATTTT
TAGGTTACAGAGGCTAAGACAACCTTTTAAACTTAATACTTGGCCATTTACTCCATCGCT
ATGAAGCACACAAATTAATGGTAATATTTCACATAACAAATAAAAATGGCTTCACATGTT
AAACTTGTTAATTCATTGCTAGACTTGAAATGGGCACCACGGCAGTAATTCTGATACTTA
TTCCTTCCTATATTATCATTTAAGGAAAAGTTAACTAATTACCAATCATTGCAAAAGGGG
TGGCAATTGAACCCCTTTTGATAGCAGGTTTAGTTTTGAGACGAGATCATATAGTAACAG
TTTAAAAAACTAAAATTTCCTTCTCTGACAGAAATCGCCATGTCATTCTAAAGAAATTAT
CATCCCCTCTAACTGAAAATGACAATGAAATCGTTCGCAAATGCCACCTCCTCCTGGCGA
CCGTTCGTCAACAAAGCGGGTCCATAATTTATGTAGAAAACAAGTCAAATAGGCACTAAA
ATGAATACAAAAGGATGTA