morexGenes - Barley RNA-seq Database

Contig contig_37272
Source Contig contig_37272
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_37272 (8709 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_37272

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_52077	4	3975 bp	MLOC_52077.2	Available	Available	LOC_Os10g42490.2, FRAME:-1, EVALUE:0.0, 13110.m03994 protein homeobox and START domains containing protein, putative, expressed
CDS Structure of MLOC_52077

Contig Sequence (8709 bp)

>contig_37272 8709 assembly3_WGSMorex_rbca.fasta
TTGCTAAGCTAGCTAGCTTCAGGTCGATTTAGTCCCTTATATATATATGTGGGCATATAC
GTTGTAAAGAGTATCAGAATAAATAAAGAAAATAGCAAGGTACGAGACGTGCCTGTTGTA
ATACATCCGCGTGTGTGCGTGAGATCAATCTGAAAAAATGCCGGCTAGAAGTGCTCGTAT
ACGTACGTACTATTAGTTTATATCCACGTCCAGTACGTACTATTAGTTTATATCCACGTC
CACGAGCATCGATCTGGCGAGGCCAACACTCCAGCCTTTGGTGCGGTCAGTGTCAGTACT
CCGAAACCCATCTGAAGACAGCCCCCCTGCCTGATCCAGCTAGGGTAGCAAGCATCCATG
AAGCCATATTTCCATACATGGCACACACACAAGTCAAAGCATCAAACAAAACCAGTATAG
GCAGGGGTAGTATGGACAGATACTAGACAGGGAGATCTATGGTAGCATGCACCATGCAGG
CAAGGAAGGAGAGCCTTTCCTCTTCATAGCATAGTGTTATTTATGAGAGGCATCTCCCCA
CCCACCAACCATACACAGCATCTCCCTGTGTAGCGGTAGCACAGTACAGGGGAAGGGATA
AACATCTCGGCACAGCCACTGCATCGCAGCTCAAAAATTGGTCCTCCACCACCACAGTTG
TAGACTGTCAGAACATTTCGAGCCAAGGAGGGGGAGGAGGCCGAGGCCAGCAATGAAGGC
AACGGATCCGATGCAGCAACGCAATGCAGCAGAAGGGCAGGGCATTCAAAGCCTGGCGCA
GATCAGGTTCACGCAAAAAACAAAAGCCAGCATCCGCATTCACTACCATTCAACAACCAG
AGGAGAAAAGAGGGATTCAAGTACCAGGAACACGGTAGTAACAAAACATAAGCCAAATGT
TTTACAGACAAGGCGGAGAGAGGAAACAAGTCAATTCCCGAACCAAGAGACCCATCCGTT
GCAAGTGGAAAGGATCACGAATGGTTCGCTCTTGACTCCTCCTCTCTCACCTTCATCTTC
CCTTTCGCATTACAGTCTGCTTTAAACAAGTCTCGGAACAAAGTCTACGACACGCTCAAA
CTAATGAAGTACTCTCATTATTACAAAATCAAAAGAAGAAGATACCTTCACAGTCTTTGA
CTTCCTGAGCAGGGGGGAGGAGGGAGGGTAGCAGCAAGAACAGCATGACCAAAATGCCTG
GGAGCTGATTCTGTTGGTGTTGGTTGATGCAAGTGAGAGCTTGACAAGACCCTTTCTGGT
TGGAGATCGATCACGTTGCCTTCCTTCCCAAAATGATCAAAATGCCCCCAGTGGTTTACT
CGAGGGTATTTTTGCCATTTTGAGAGGAGCATGGCGGGAAGAGAGGGGTTTTGTTGTTAG
TCTTGGGCTCTTGTCAAATCCTCCCTTGCACCTGAGCTGCTAACAGGGATGCTTGAGGTG
TCAGCAGGTGGCAAAAGAATTGGCCTTTGGTCTGCGGCATGCATGCGCTCCCCTCCACTC
CCATCCATCATCTCTTGCTACTGGTCGGAACATGCAGGCGCCGGCTCAGTCCGGCTACCT
CCGGCACCCTTGAGTGCTGTTGTAATCTGGTGGATGGTGTTGCAGATGTGGCTGTTGATC
GCGGTGACGCTTGAGAGGTTGAGCTTGGCTGAAGGCACGGCGCTGGCGAGCACCTGCATG
CCGACGGTGAGGAGGCAGCCAGTGGCGGGCTCATCTGCATTGCCGGGACTACTTTCGCCG
TTGCCAGTGGTGTCTGAGCTGGTGGCTCCAGGTGAAGGGCTGGTGGCTGGGAAGATGGCA
AAACCCATGGGAAGTAGAGGAATGTAGGAAGGATCCTCCCCGCTCATTGTCACCTGGATG
GCATCCACATCCACGGTTGCAAACACCACCAGGCTTCCACCATCAGGGTGGATGCTGCTC
TCCTGCAGCAGGAGCTCCACATTCTGTGATGAGTTGCTTGCAGACTGTCATTGAAAGTCA
CAGAAATATCAGCTCTCAACATTACTGATATGTCAGCATGTAATTAATGGCAAACTGGCA
ATCTAAACTCAGTTGATCTTACAAGAAGTCTTATGAAATAAAAAGAAGGGAGAGTAATTC
CCTAGCATGCATGTGCTTCCATAGTCCCATATCTACCGACCGAAGAGATGTCACTGAGAT
ATCTCAATCAGATTGCAAACATGGAAAGGCAGTGCCTAGACGGCAGCATGTATTGATTTA
GAACGACTCATTAGACATATAATGTGAACATGGAAGGACAACATGTATTTCTAAAATTGA
CTACTTTCCTTGCATCTAAAAGCTCTTGTAGCAAATTAGATGAACTGTGAACGTAATGCC
AGCACATAAACGAATCTAAAAGCTTTCTTAGCAAATTACAGTGATGCATGTGCCCAGCCT
GTGCCTAGACCGCACAAATATCATTTAATGTGGTACCATGAGCCAGCCAGTGTTGATTTA
TTGTCCTTGGTATTGGAGGAAACAGTAAGTTATTTGAACCACTACCAAAATGTTGGTACT
GGTAGTAAACAGTAAGTTATCTGAAGCACTACCAAAATGAATGTAGTTACTGCAGTAATT
CGGTAGCAATGAGATATTGAAAACTATTGCTCAATTTTTGGCATTTTTTCTGTAGAAATC
ATTAAAACAATATATGTTTTCCTCTACATTCTCTAAATTACAATCGAGCCCTGGCCAGTA
AGATTTTTAAGGTAACAAATTGTGATTATCATTATACTTGTTCGGCATAGATACAAGTAC
ACGTGAAGTTCAAGTTACCAAAGAAAAGAGTTAAACTATTGAGTGTGCCCAAAGGAGCGA
ATTTATGGCCTCTTATTGTACATAGCTTTTTTATAAAAGTACAAAGGAATTCCAGCATTC
AGAACTTGCGACGACCGAAAAGAGTACTTACATTTATGCGAAGAAGAGAAATGCAATTCC
TTGGGTGTGATCCATTTGCAATATGTGCCACCTCATGAAGTGAGCCCCCGTTTGACATAA
TCTCAAGCTGCAAAAGCATGACAGGCATCACGGTACTGATAAACCAAAGAATTTTTTAGA
AGAAGATAACCAACACTAACAATGATAACAACATTTGAGAAGATAGTACAGATATCGTTT
CTACCTGACAGCGCTGTTGCTCGTCTGCAAGAAGCTCAAACACCTGTTGATGGCTGAAAG
GAAGCCAGCTTGTGGAGACTGCAGTGAGGATGACACCGCTGGGCTGCCCCGGCTCAGTAT
TCTTCCTTGTTGTAATCCTGACTGTGTCCTCTGTAGAATCAGATAGTGCCGTCCAAGACT
GGCTCCCAGATGCACTTATGTTAGCACAGAAGGCGGTGATCATCCTCTGAGACAGCTTCA
TCATATTTGTCCTCGCCTCAGGGGTGCGGATAACTGGGGTTTGGAATTAGAAATCGATAT
GATTAGGCTTTTGTGAAGATAGATAAACATCCATAACACCGATGACTGAACTGATAAAAG
TGATAAGCAAAACCAGTGGAAAATATCCCAAGACAATGATTGAAATTGCAGCACTCAAGT
ATAGACAAGTAAACATTGCTTCCTGCTAATGAATGAAACACGAGCGGTTGGCTGGATCTT
TAAAAAAAAAAAACAAGTAAACAACCATGTATACACATATTGCTACGATCTGCCTTCCAT
ATAAGACGATGATGGAAGATAAAAGGACGTGCATTTTAAAGCAGCAGCTAAGCATTGGCC
CTCTGAGGCAAAATGTCGAACACTAGATAGGCGGGCAGGCAAGAACAACCACAGTACTCT
ACAAAACATGGCGATATGGATCGTTTAGCTATATCTAGTCTCAGCATCGCAATTCACAAG
CAGGCGCCGCGAGCAGGATGAGCATCAATCAGGTGAAATGTAAGCAGCATAGAGAAGGCA
TGGCGTGCGAATGCGATGCAATCAACGCGGTGCAGGGTGGCCCTTACCTCCTTGATCGGC
GATGCTGCGGGCGAGCTCGCTGGCGAGGCGCTCACACTGGCGCTGGAGGACGGAAACCCA
CCTCGTGGCACCGAAAGCGGCGCCGCCGGCGACGTGGTCCTTGAAAACCGGCTGCAGGGG
CTTCTCCTCCCCCACCACCTCCATGTGCTCCACCCACACCACCTGCGTGAATCCACGTGT
CAGAGCTAAGTCCATGCATGACATGCAACGTCACGCATGCATCACATGCACGATGCATGC
ATTGGGCCTTGGGGGCGGCGGTGCGTACCCTGGAGTAGCCATTGGGGGCGTCCTGGATGA
TGCAGCCGGAGGGCCGGCGCCGGCACCGGACCAGCGAGCTGGCCTGCTGCTGCTGCTGCT
GAAGAAGCTCCTCCTGGAAGCCGTCCGCTGGGAAGTCGACGATGGACCAGGTCCCCTCGT
CGGCGTTGTGCACGCAGTACCGGAAGAAGACCACCTCCCGCGCCGGCACCAGAGGAGACA
GGAACTGCACCTCCGCTTGCATCTGCATGCGCACGATTCATCAGCAAACCAATCAACTAT
GAAATCGATCGATGGATGCATGGATGAGCTAATCGATGTACTCCAGTAATGTCGTGGTTA
CCAGAATGAGAGATCCACTGCCGAGATGGCCAGAAGCAGCGCCGTGGTGTATGACCTGAA
TGGTCCTTGCCTTGCACACGATCGAAGGGAACAATTCCATCCACTTGTTCTGCATGGTGA
TCTCAAGTTAATCTGATGCGCAATGGAAGGAAATGAAGTGATTTTATCAAGATGGAAGTT
GATGAACTCTTCTCACCGCGTCGAGGAAGGCGTCGACCAAGGTGATGCTGTTCATGATGA
CGACGGCACAGTCGCGCGTCCCTTCAGTCCTCGCCGCGTGGGCGACGTCAGTCTGCTGCT
GCTTCCCAGAGTCGATGGGCCAGCTGAGCATCCGCGCGTGCTCCTCAGCGTCCATGACCT
CGCCGGACGAGGAACCGGCGCCGCGGCGGCGCGCCCAGAGCGGCTCGCTGGTGCGGCACA
TCTTGATGAGGTGGTCGGCGGCCGTTGATGCGAGCTCCATCACCAGCTGTTTGTCCTGCT
CCTGGACGACGACGGGCGTCATTGGGCCTTGCAAGTATGACGCCGTGGCCGCAATGCCGT
GAGCGCCGCTGGCCATCTGCTGCTGCAAAGCCATGAGGTCCATGGCGCCGTGCTGCTGCT
CGACGAAGTGCCGGGAGTAGACGTTCATGTCGAGGTCCAGGGGCGGCATGAGCACCGGCG
GCGGCGCCGACATGCAGCTCAGCGCTGAAGCCGACGACATGCCGGGCTGGCGACCCCCGC
CGTACCTGCTCGCGATGCACGCCAGGCGGTCCAGCTGCAACCATGCATCCGACGCGCAAA
ACACGTACACCACCATTAGCCACTTTGATGCAGTACGTTACAGTAACACTAGCAGGCATT
AATTAGCTAGGGTTTAAGCAAGTGGCAAGAACGTACGCACCTCGTCTTTGAGGCGCGCGT
TCTCGATGCGGAGGTTCTGCTCCTCGTAGGACATGTCACCAATGACGGCGGCTTGGCCGC
AGCTGGGGCAGACGACGTTGCGGATGGCGGCCTGGAGGCGGTAGTTGTCTGTCTTGAGGG
ACTCGTTCTCGGCGCGGAGGATGACGTTGTCGGCGCGGTCCTGCTGTGCCTTCATCTGCG
TGCGCCGGTTCTGGAACCAGAACTTGACCTGCCGGGGCTTCAGCCCCAGCTCCTGGCTCA
GCTTCAGCCGCTGCTTGTCGTCCGGGTGCGGGCACTCCTTGAACAGCCTGCATGATTAGA
TAGCATCCACACGCGCGCATCAGCCGGATTACTAATTCAGGAAGATTTTCATCATTAATA
CTATACTGTGCTGTATAAGATAGAGGTTTGGTTATTGTTTCTTACGCCTCCATCTGCTGG
ATCTGGTGCGCGGTGTGGCGATGGTAGCGCTTCTTCTTGCCGTTGCCGTTGGACGCCGCC
GCGGCCGCCGACGAGGAGGGGTGGTGGCCTGCGCCGGCACCGTCCGGCTCGCTGTGCTGC
GGCTTCTGGTCCCTATCGTCGTCGACGTCGGCGAAGCTGAGCAGACCGTCGAGGTGGCCG
CTGCCGGAGCCGCCGCTGAGCTCCATTTCCATGTCTAGGTCCAACTCCTCGTCCTTGGCC
ATGTGAAGCCCACCCATGACGCCCTCCTCTTTCTGGAAAAAGCAACCCAGCACCAAAACG
GAACACATTTATTAATTATTAAATTTTCTCCGCATGCATATGTACGCAACAGGCTAAAAG
ATGAAGATGAGGATGAAGGCGAAGCACTTACGGGTATCAAGTTGGTGGAGAAGTGGTGAT
GAAACGGCATGGCTGAAGAGGAAGACATGAAGCCGGCGAGCGCGCCCGGGTTGGGCATTA
GCGGCGAGGCGAAGAGCGCGTCGGCGGAGGATCCGCCCGCGGCCATGGCCGCCATGGACG
AGAGAACCTGGCAGTCCCCAAACATGGTTCCTCTTCCTTAATTCCTCGACCGACCGACCG
ACCAAGGAGAAGGAAGGAAGAGCACCTGGCTGCAGCGACCTGCAGCGGTTCACCGTAAGA
TGGAGTAAAAACCAAGGTGAGGACGAAGCATGGTAGAGAGGGAGAGGGCGGTGGTACAGG
GCGGAGGGGGAAGAAGATTTAGGGAGGGGAGTAGTAAAGGGAAAGATTTGGAGGAGGAAG
AGGAGATGGGTGGGTGAAACCGGAGGGGCGAGGGACAAGGAGAAGTAAATGGCGGGAGTA
AATACCCTGTCGGTTGTTCTGTGCCTCGCCTGAGCGCCTGTCTCCCCTCCCCAGCCCGGC
CCCGGCAGTCCCTCGAGCTCGGAGGTCGACGGAGACGACGGCGATGATGATGAACCCGGC
TCGATCTCTCCTCCCTCGCTCGCTCGCCTGCCTTTATCCTCGCTACCTAGCAGGAGAGGA
GAGGAGTGAGCGGGGTGGAGGTGGGAGGCGAGGGCACACTGTCCGCTTTGACCTAGTAGG
AAAGAACAAACGCAGTTCCGGGACGGTAGCTGGCCAGATGGCCAGTCTCACTGACGTCCC
TCCCCCACCGTTGAAACCGCGTGGGCCGGGCCCCACGTGGCGGCGACCCTGCGCGAGGGC
GCGCCTCGGGGAGACGCCCGTGACGTGAGTGACCAGCGAAACGATTCCCACGCTGGGGCG
GGGGGGCCGCGGGCCAGGAGAGGCAGAGGGCGCGGAAAAATGGAAAAAAAAAGGAAAGCC
GAATATAGGGGAATTAATGCGGGTAATTACGGGCCGGATTACAGCGGGGGGCGAGGAGTA
AATGCCTGCCTTAACTGCTGCGCACTGTAACGGACGCGCGCCCGGGCCGTGAACCCGCCC
GTCTTTTCGTCCCACCGCCTCGCCTAAGCTGAGCAGCACTGTAACGGACGGACTTAGGCT
GACCCGCCGCGCCCTCGCCGTCGTCGTCGTCGTTCTGACGGAGAGAGAGGTCAACACGCA
TCCTTCCCGCCCTCGCTTCCCGCGTGCGTTACGGATAGGGAAGGCGCGCGCTCCGGCACT
CCGGTCCGTCCGATGACGGCGGCGGTCGGCGGGGTCCGTCCATGCGCAGATTGCCGCGTT
ATTACGGCCCGACTCGGGCATGGCGCCCATGTGTCGTGTTCGCGTACTCCCGCTGCGTCC
TGCGCGCGTGCCCGGCCCGCCGTGGTCGTCGTACTACGTTACTGTAACGTGCGCGGGTGG
CGAGCAATGAAAAAGGGTTTTTTGCATGCGTTCTCGTCACAGTTAATGCTGCCCGGCGTA
CCGCCCGGGCGCTGCTGCTGCTGCCCGGCGATCGCCGAGATCTTCTCTCGACCGTGCGAT
CTGTCCAGATCGCCGTATGCTACACAGTCGTCTTCTTCCTCATGCGCGCGTATCGCCAAG
AGCCGAGGGAGGAAGACGGTTCGGTCATGTTTCTTTAGTTCTCTATAGACTAGACTAGAC
TAGACGAGACGAGATAATACGTTTTCGTTATCTTCCAATGCTGCATGCCCGCGAGAGGAG
AGGAGAGCAAGCAAGCGTGCAAGAAAGTGAAGGAATTTCCATCGATCGATGTATGTATGC
ATGGGAGATTGCAGGGAGCAGAGTAGCGGGGGAGATGTGTATGGCCGGCGGTATCGTGGG
AGCGCAGGACAAGCTGATCTCCAATGAATGCCGGCAATGTTGACACACAGTGGCGCTGGA
AATAGCTAGGCCGGCCTCGCCTCTGTTGCCCTGTTGGGGAGTACGTACACACATTCACCC
ATTATTGAACTGCAAAACACATTTACTACCACCATGTGAGACTGCCCTAGCTTGCCTAGC
TTGGACATCAACTGCCGCTGCATCCACCTTAACTACCACGCGCACAGCTCAACTTTCCCT
TCTTGCTTTCTCAGGTAACCAGGCTTATTAGCTTTGGGCTTGATACACCACATGCAGATG
CAGTTTCCTTGTTTGAGCTGCATTATAACTGTATAGTCATGTTCAGAAAAAAAAAATACT
CACAGGTGTAAGTTTCTTCCTCTCACGAGTTATGGGCGTTGTGGGACATTCTACACCCCA
GCACAATTTAAGCATCAAGAACTTCGCCAATTTTCTTACAAGTGTGACTAATCAACACAT
TGATGTTACCATTAACACGGGCAGGGATGGCGGCTCACAGGTGATTATGGTGACCGATGA
ACACTAGTTTTTGTTGGGTAACGTAGCAAAAATTTAAAATTTTCCTACGCCATACATAGA
TCTTTCTAT