morexGenes - Barley RNA-seq Database

Contig contig_37224
Source Contig contig_37224
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_37224 (7288 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location
Predicted Genes from contig_37224

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_52009	5	1327 bp	AK250329.1	Available	Available	None
MLOC_52008	1	426 bp	None	Available	Available	None
CDS Structure of MLOC_52009

CDS Structure of MLOC_52008

Contig Sequence (7288 bp)

>contig_37224 7288 assembly3_WGSMorex_rbca.fasta
AAGGGGTATCCACTTACTGGTGGCAGCGGTGGGTAATTTTGCTCCAACTCCAGCTTCTAC
AATTTTATTGAGCATCTCCTAGAGAGCTTCATAAAAAACAAGAAGTTGGATCCCAAATTC
TAGTTTTTTTGTGGAGTTGTATATCACGGAGCTATCCCGTTTGGCTTATGTTTTCTAAAA
CGGAGCTGAATTTTCTGCAGTAGAGCAGTCCCAAACAGGCCCTTAATCATCCGAGCGAAT
TGCATTCCATAGGCTGTGACGACAGAGTAGCGTCCATCTGTCGTAAATTTCCATTGAATG
ACATCCTCCTGGCCCGTCTCTTGTTGTACCTCCTGAACCTTGCTCCAGAGATCAACAAAT
TGTTGTATGTGAATGACAGAGTCCTCTCTACATGTCGATGCGACGGATCCAATCATTGTT
TGCCAGTGCATGTGCCACGCATGCCTTCTTGCGCTTGGAGAGGGCGAAGATGTCCGGAGC
CATGTCCTTTGGTTTTTGCCCTTGTAACCAAGGAGCGAACCAGAAACTCGCCTTCATGCC
GTCACCTATGGTCACAGTCGTCGTAGAGTAGAACAGATCCATGTCACCATCATCGCAAGA
GATGTCAAACCAACCCAAGCTCTTTGGGGGTCCATCCACTAGAACCAAAGCCACCGGAGT
CTGAGAGCTTTGGAGAACTTATCGAGGTTGAGCCAGGCTGAGCTTTGGAGAACTTATCGA
GCTCGAGCCAGGCTGAGTGTTATCTCTGCTTCGGTTTCTTTCACACTTGTGATGACCAGA
GAGCTTACCTGCAGCCTAGTTCTCACACGGTTTGGCTGCAGGAATCCTTATATCAGATTG
CTCATGTCCGTGACAAGACATCCCGTCCGATTTCTTATATTGTGCAGAAGTGCAAGTGTG
GTACTTTAAAGTGTTGTTGTGTTGTGATATCTTCGACCAATATCTGTAGCTGTGAGGGTT
TAATACTATCCTAAGGAAAATTTCTGGCATTCTCTCTCCCGTAAAAACATATTTGATCAA
ACTCTAGACATATGTTCTCTTTGGTGGACTCTAAGTTACATGCTTTCACAATAAGTTTAC
ACTAAAAGTATGGAAGAACGTAAATACAATTAAAACGGTTGTAAATGTGAATACAACGAA
CCAAAATTCATACAACTAACAGGGCAAACCAGAAAAACAATATTCAGCATATGCATTATT
CAAAAAAAAAAAAGGAATACAACCAAACCACGCTAATTTTCAACAGATCTGAGCAAAATC
AAATAGATTCTCGCCTCAGATCCTGTGTTTGTAGATACAAACTAAGGAAGACTCCAGCAT
ACTTTGAAATCCCATAGTAAGCTTTGCATCAAGGAAGTGACAACCAATGCCAAGAGAAAA
TAACAATAATGATGTGATACATGTTTTATTATACACAACTAGCCAACTACCACTAAGATC
TGTCTCAAGCACAATCCTCTATTAACAATCTCAATCTCTATAATTGCCAGAGAAGTGCTC
TTATTTTTGTGACCAGCCACTACAAGCTTCAAAAGTCAAAAAACAACAACAACAAAAATC
TTGGGAGAAACGAGACCAAAGATATAGCCAGCTACAGCCTTATGATAGCAACCAGGTAAT
GAACTTTGCAGCTTATTCTGGCCACTCAGATTGCCGACTACTAGTTCATTCACTTGCCCA
ATAAAATGGAAGAATCAATCAGCTTTGCAATAACCTTGTATCCCTAAATTGATCAAAGAA
TAAGAGGCTGTACAATTCTAATAAGCGTAGCTGTGGGCAAAATGAATCGAAGATTCCTAT
CAAAGAACATCACCAACACGTATTCTTACAGGCAAGGGTCTAGCAATCAGACCATCCATC
ACCCAGCCACCATTTGAACCATCATGCTTGACATGTCTAAACTCCCTCTGAACATAATCC
AGTGATGCTTCAAGCCTTCCACCTGGTCTACACTCGGAGGCAACATTGAATGGTTTGAAA
CCCATATATTTCTCTAACCAGTACAGATAGTTAACATGGAATACAGATTTGAGCATGTCT
TCTGGGGAAGATCCTTCTTTAAGAACAACCTACAAATGACAGGTGATATGTTAATTAATT
ACTATAACAGAATCAAAGTTAGGAAATAGTTGCATCAAGATGAACTCACACAAAATTTCC
CCTTGTAATCAGTAAGAAGGTATTGCTCGTTTTTGTACAAATCAAACAGTGCATATGCAT
CTTCCTTGTTCTCAATTATTTCACTAAGCTTAGAACCCAATTGTAACCGTCGATAGATTG
TATCTGCAGCATCTTTTGCTTCTGCTGACAAAATCTCACTTTGCTGGCAAACAAATCAAA
GAAACCAAAGATAGTGAGAAATTAAATTAAATAAAGCAGGAAAACGTTCTTCGAATCAAA
TGCCTACAATTAAATTACATTACTATTGTCAACAAAAAGAACTAGTTAAGTAATTATAAC
TAACTCCAACAAGAAAAACCACGATTATATACTTAGACATGACCGATCACATGTAGACCA
TGTGTCCTAACTTTATTTCCTAAAAAGAAAGGTCAGCGATGAATAGTAAGAAGTATGCTT
GACTTACTTTAAGTTGAGCACCCATTGATGAATTCGGAAAAAGCGGCTCCTCATCGTTAA
CCTCTTTGACTGAAGGAACTTGTCCACTTAATAAATATTCACTAAATACCAAACCTACAG
AAATTAATTATCGAGCAAATGCTTAAAGACATCCTTGAACACTGTTGAATGCCAAAGAAA
AACATTACACAGACACGTGCTTGAGCTAATACGTATAAATGTATGCTAGCATACTTGTTA
GACATGTAAAAAGGAGAAAACGCAATGTGCCATTAAACCAAAAATATGTGAGTAGCAGAA
AATAATGCTATCTATGGGAAGCATCATAAGAAGCCATATTTAATCTAACGCTAAAATTTA
TAGTAAATTCATCAAGAGGCCGAAATTTATACCTTAGAAAATCTACATTTTCCTCCAACA
CTGGGTGTACACAAACCAAACACATTAACATTCTTCATGAAAGATTCTCACATACAATGG
AGATAAGAATGTACTTTGTGTGTTATTTTCAAATAAAACCATCAACTGACAGTCACTGTT
AAGCTGTTACCTCATTCTAAACATTTATATTCCATATTTCAGAAAAGATGTGATAACCTC
AGCAGAATAATCGCAAGCAATTCTACTAGACTCATTAGTAGATTTCCCAGCTCTTTGCAC
ATCTTATAGACAAAGAATTCCAGCTAAAATATTTTATTGGGTTTTTATCTTTTATGCCAC
TAGTTGTGTCCCACTACTCAGTTTTGCCACCAGGAGTTACAACTGCTCAAAAATGCCATC
GCTGCGTTAGACACATGCTCAGAAGTGCCACTAGACACCATTACTGTCAGCTCAAATCCC
GTTTACCATGTTATATGACCAAACCACCCATGGACTAACATGTCAGCTCTCCCTCTATCT
CACTACGATAAAGTGTGGGTCCCACTTGATCCCCAATAGTGTTCTCATTTTCCTACAAAA
TTATTCGGTTGCTTACACCTGACAAGTGAGGCCCACACTTATGCTGTGTTTGGTTCAGCT
TTTGTTTCCAACTTCTGCTTTGAAAAGCTAAAAGCTAACCAAAGAGGTAAATGTTCAAAA
CAGCTGTTGAGAATCTATAGCTTCTTCCTACAAAATTATTCGGTTGCTTACTCCTGACAA
GTGAGGCCCACACTTAGGCTGTGTTTGGTTCAGCTTTTGTTTCCAACTTCTGCTTTGAAA
AGCTAAAAGCTAACCAAAGGGGTAAATGTTCAAAACAGCTTTTGAGAATCTATAGCTTCT
TCCTAGTGTAAATTTCAAAGCTGGGGGTACCCCAACTTTCCAACTTTTAGCTTTTACACA
GCAGCTTTTCCACAGCAGCTTTTCAACAGCAGATTTTTCAGAATCTGCAGCTCAACCAAA
CACAGCCTTAGCATTGTGAGATAGAGAGAGTTGACATGCGGGTCTAGGGGTATTCTGGTC
ATATAACATGGTCAACAGGTTTGACCTGACAATAACGATATCTAATGGCATTTTTGAGCA
AACATCTAATGGAATGATGGAATTTTTGAGTTGTTGTGACTTCTAATGGCAAAACTGAGC
AGTGGGACACAGCTAGTGGCATAAATGATAAAAACCCTATTTTATTTGGTCAGTTCCTCC
TAGCTACGATCTTCGAACTTGTACCAAAGATCTATCCTGCTACAAATTTGCATGCAGGTC
TCCTGGATGTTCTTGAAATATAAATATGTATTCTTGTATTTTTTAAAGCATTTTATATTT
TAAAAATAACTTCTATTTTAAAATGTACTTAGTCACATTGATGAAAACAACATGTCTAAA
AGGAGCAACATCATGGTACTACCTCCTTTCCGGTTTATAAGGCTTGCGCGTATTCCTAGG
TTGATAAATAGGCCATCGTAATACAAGTTATATATCACAAAAAATATGTCATTAAAACCT
TCAAACCGTCTACTTTCTAATGGTATAATTTTTAGACTATACAACTCATTTTATCTTGAT
CAAATTATAAATCTAGGGATATGTGCAAGCCTTATAATCTGGAAAGGAGGTAGTATACAT
CAGGCAGTCATATTCCTATCGTTTATCAACTTGTCAAGATTGGCCGGTTTATGCTGCCAC
TGCCGGACTGAATTTTGGTTTGTCCTCCTCTTCCATGAGAATCACTTGCCTTGAAATTGA
CAAATTTGCATAAAATACAATGTCGCAAATTAAATTTCAATATTTGCCAAAAATATGGAC
ATTAAATTAACTGTGGATCTTTGCCTAGTTCAATTTAGTCATGACATTTTTATCCATCAC
GAATATACTGATTTATCTACCTAGCCATTTTAAGTTTTAGTCACAGAAAGATGTTCCATT
GGAGGATTCAGGGCTAGGATGGCAGCAGATGAGAAAGCAAACTTACTTGCACGGTAAGGA
TTCAGTGTCCTCAGCTGAATTGATTGATAAGACTTAAGGTTGCAATACATGTGAACTACA
GTAACACCAGCAAATGAAATAAGAGCCAGTGGTACTGATGAGCCAATTTGGTTAGCTAAG
GCTATCCCAAGCATTATGCCAACAAACTTGCTAACCATTCCCTGAGCTTCACCCTTTGCA
ATGACCTGAAACATAACTCAACTGATTTCAGTCACTCAGGTGAAAATATGAAGTGAGACA
GATACCGCTTCGAGTATTGTCAACTCCCTCCGTCCCAAAATAAGTGTCTTAACTTTAGCA
AAACTTTGTACTAAAGTTAGTATAAAGTTGAGACACTTATTTTGGGACGGAGGGAGTACA
TTCTAGTATCTTAAGAGGTAAAGGTCATACGGGTAGTTCCTTTATGATATAAAAATGGCA
GAAGTGCATCCAAGAAAGAAAATAGTACTACCCAGTTGTACTGATGCTACTGCAAGGTGG
GATTGACAACTCTCTGCTAACCAAACAATATCAAAAAATATGCATGTGCACACCATACAA
TGTTGGATGTGAGCCCATGTTCCATCCGGCCCTTAAGGCCCAGGCACGGTCCAGTGACCT
AGAAGAGGAGCCAGACCATGTCTGGTCAGATGCGCCTCTCCACACCAGAAACAACAGCAC
GAGGTGCGTTCCTCTCTCTATCAACATGGTATCTGACCAGCGGGAAGACAGGGTGAGCGG
CTGGAAGCGGAGTGCGAGGCAGCGCGGCCGGCTCGGGCGAGAAGAAGATGCGGGAGCTTG
CAGCAAGGAAGCGGCGGGTCTGGGCGCAGAGCTGCTGATGCGTGGTGCGTGCTACTCTGC
TGCTTGCTGGAGTTGCTGCTGCGTGTATGCGTGTGCGCTGATTGTAGATTTAAAATAGTG
GAGAAGAAGTAGTGCTGCTGTTTGAAGAGAAGGAGGCTGCCACTGCTTGCTGCTGAGCTG
CTGGAGTTTGTGCTAGTTGAGAAGAAGAGGGAGTGTGACTGGAGCTGCTGCTGCTGCTGG
GCTGCTGGAGTTGGTGGCTACCTTCATGGTGCTAGCGTGCCTAGAAGAAAGGTTCTCACA
GCTGAGTGGCTGCTGATTGCAGAGGAAGGAGGCAGCACTGGAGGTAGCACAGCTAGGAGA
AGAAGAGGTGGGGGCAGTCATGGGGACTGAACTTACCGCTGCCATAGAGAAACTTGCGCA
ACTCATGGCTGCGAAGGCTGCCGAGGGGCCAACTCCTCCAGGTAGCAGAATATTGTGCCT
CAAGCAGATCAGGGGTTCAAGCTTGAGCTCATGCAAAATGATGCCAAGCTGAACGGTGTG
AACAACTACCTGAGCTGGTCGAGGCAGGCAATATGTGGATGAAGATGGCGACTTGCATTC
GTAAGGTGCCCTATGGAGTTTGCAGTGTCCCGGGAAAGTAGAAACGAAGTTAAAGATACA
TGGTGGTGGAACGATGATATCCAAAAGGCTATTAAGGAGAAGAAAGATTGTTTCAGACTC
CTTTACTCATGGATTTTGAGTCGCACGACTAGTCATGACTCAGCTAAGTGTTGACTCGAG
TCGCGACTAGTCGACGAGTCGCAAAAAAATGTCGACTCAACTTAGTGTCGACTCGAGTCG
CGAGTCACAACTAGTCGCAGCTGCAGGCTCGACTTTTCCGAGTCACTACCCCAGAGCGAT
TCGGATGAGTCGCGACTCGAAAACCATGCCTTTACTTGGATAGGAGTGTAGACAACATAG
AGAAGTGAAAGGTGGCAAAAAAGACCGCAAAACGAACCGTGAGTGATGCAAGGGATCGGG
CGTATGAGGACCTCTATCAACGCTTAGACACGAAGGAAGGCGAAAGNNNCATCTATAAGA
TGGCCAAGATCCGAGAGAGGAAGACGAGGGATGGCAACCAAGTCAAATGCATCAAGGACG
AAGCAGACCAACTCTTGGTGAAGGACGAGGAGATTAAGCATAGATGGCAGGAGTACTTCT
ACAAGTTGTTCAATGGGGAGAACTGAGAGCTCTACCATTGAATTGGACGACTCCTTTGAT
GATACCATCACGCGTTTTGTGCGGCAAATCCAGGAGTATGAGGTCAAGAGGGCTTGAAAA
AGGATGAAAGGAGGCAGGGCAATGAGCCCTGATTGTATCCCCGTTGAGGTGTGGAGAGGC
CTAGGATACATAGCAATGGTATGGCTAACTAAGCTTTTCAACCTCATTTTTCGAGCAAAC
AAGACGCCAGAAGAATGGAGTATATTAGTACCAATCTTCAAGAACAAGGGGGGTGTTCAA
ATTTGTACTGATTACCATGGAATTAAGC