morexGenes - Barley RNA-seq Database

Contig contig_37214
Source Contig contig_37214
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_37214 (6052 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_37214

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_51996	1	910 bp	MLOC_51996.1	Available	Available	LOC_Os11g02820.1, FRAME:+3, EVALUE:5e-25, 13111.m00217 protein CRP10 - Cysteine-rich family protein precursor, expressed
CDS Structure of MLOC_51996

Contig Sequence (6052 bp)

>contig_37214 6052 assembly3_WGSMorex_rbca.fasta
CTATAAATTCTTAAATTATAGACATTTTTNNNNNNNNNNNNNNGTGTGCCGTGTAGTATT
TCTTTCTCCCGTTGCAACGCATGGGCCCTTTTGCTAGTAAGAAAAAAACTGAATCCTAAA
AGAAAAAACTGTATGTACGGCTTGTCCACACACATATATATTGCCACTAGTATACGTGGG
ATGGTGTTGCCATCTTGCCAAACCCACCTCATTCCCCAGCGAAAACTTCCAAGCCGCCAA
AGGCGATGGCTGCGTCCGCCCCTCTCGCCGGGGTCGCGCTCCTCCTCCTCCTCCTCCATG
CCGTCCATGGAGGAGGCATGGCCGGGATTGCTAGCACGGGCGGAGCGAGGATGAGATCAT
CGGAGGGGTACGCGCCGGTGCGGACCGTGGTGTACCGGTCGGCGGCGTCGGAGGCGTTCG
AGCCGTTCCAGCTATGCATGGGGTGCCGGTGCTGCCCGGCGGGGAACAACAGCTCGTCAT
GCGTGGACACGCAGTGCTGCTACGGCATCAACTGCAACATCCCCGGCAAGCCGTTCGGGA
CCTGCGCCTTCACCCCACGCACCTGCGGCTGCGGCGGCACCGCCACCGGCGGCGGCGGCA
ACTGCACCTCTGCGCCCGCCCCGCCTGCGAGCTAGCTTATAGGACCCGATTGATTTTGAT
CAATTGGTCCGATCCACTTACGAGTATTGCATACTTACGGCAGACCAGCTGATTATATTT
GATTAATAACTCAGAATCGTTTTCTTTCACATCTATCGTTCGTTCTCATGCGTCCATCTT
CCAAAGCTGTTCGGTCGATCATCGCTGTTGGCATGTGATTGAAAGTATGATGGTAACATC
GATCAACTGTTGCACTTTTCTCTGTCAAATCTGTCGATCGATGGGTTCCTGCAACAGTTA
ATCAGTACTGGCTACGTGCGTTTAATATAATCCCGTGCTCTGAAGAAACTGCTGAATTAA
AGCTCAGCACTGACGTTTTGTGTCTCCGGAGAAATGAACGCCGGTCTCATTGATTAAGAT
CATTATGGGTGCGTAATATTTTTTTATATACGAACACGAACGGGAGAAACTCCCCGGGAG
TTAAGAGAGTATTTTTTTGGTCATCGGCGGCTGTTGTGTTGGCTCTTGGTCTTGGAAGAC
AATGAGCACCACCACCTAACCTTGTGAAAGCTACGTTAATTGGTTTTGAGGTCCTCGATC
ATGCTCGTTTTGCTAATTGAGATTTGGGCTGATTTAGCAAGTTTTATTTTTCGAAAAAGC
AGGCTGATCTAGCAAGTTAACTGATTGTCCGTCGACCAAACGCATGTGAGCCCACTCGGT
AGATCAGCACACAGAAATCGATGCTACCTACCCTGCCGGCCCGCGAGGGTATATAGATAC
TCTTGACTGTCAGCAGACATGTAGCGATTGTCTCAAAAAAAAAAAAAAAACAGACATGTA
GCTGCTCATCCTAGAAAAAAATAAAGTTACAGTACTGAAACCTCTGTCGGAGTCAGAGCC
CGACACGACAAAGCAGCATCAAAGTGAGTCTGAAACTACGAGATCAGGAGGTAGCTTTGT
CTGACGGCCACACGCACACGCTGTCTTTTTTTGTCTACACTAGAGGGCAGGCAGTTCAGT
TCAGCCTTGGTCTGACTGAAGATTAAGGGCCAGCCAGAGAGTGTTTGAGTAGACAAGTGG
TTCGGGACTTCGGGATGCGATGCGATGGTGGAGGGAGGCCGGGGACACGTACGTTGGTCG
GGGAGCGCGGGCATCGCCGGGTGCGGCGCGTCCGTCCGACGGTGGACCGACGGCGCCCTC
GCGCCGGGGGAACCATGCACATAGAGCACACCACACCACACCACACGGAGTGATAGCGGA
CAGGGAAGGTTGCGATCGTTCGAGAGATCGATCGGCATGCGCGCGTGTGCCCATCAACTT
CAACTCTTTAATTAGGTTCCAAGCATTCCCCAATGACATTGCGTTAGCTCGTCTCTCCAT
CATTTGCACGAAGAATACGGGAATTAACGCCCTATCGTACACGGTGAATTAGAGGGTGCT
TGGATCTAAATGACTTATTTTAGTCTGACTAAAAATAATCTCTTTAAGAGGCTAAAGTTT
CAAACACTGTTGACTAAAAAGGGGTTAAAACTAGTTTTAAGACTAAAAAAATTTAGTCAG
GGATACCCCTACTAAAATATGGATTAATCCTCTCTCTTCTCATTTAACTCCTCTCCTTTA
ACACAGACGACTTCTGGATTGGAGGGTTTGAAGGATAATAAATACTCATTAACTTGATTT
TAGTCTCTTTAGTATTTAGATCCAAGCATGGATGAGGCTCGCAAGTTTTAGTCCCACTAC
TTTTAGTCATAAGACTAAAACCTATCCAAGCACCCTTTTAGAGCAACTTCAACCCCGTGA
TCCAAACGGGGGCACGGTTTGTCCATGTTTTATCTATTTGAATCGGCATGTCCTTTTTTT
TTGTTTCGATCGGTCATTCGGCTAACGTACCGATCCATTTTTCAACCATGCAACAGGCTT
GCAGCCATTTTAATATTTTTTTGCTACATATGCTCAAATAAAAATACAGCCAAACATTAA
ATTATCTCAAACACATTTTAAAGTTTAAGCCAAATAAATATCTTATAGTTTACAAGCCAA
ATAAACATTTGGCATGTAATTATCTCAAACCGACATGAATTCATATATGCTTAATCAAAT
CATTTTGCAGCTGCATGTAAGTTTCTCAATTACGCATCTTATGATGAAACTCGAAGAACG
GTGCAAACGTTGCCTTCAACATGCTCAGACACAATATTATCATCCTGAAACCGAAACTCT
TGATCACACAGACGTTTCAGACGCTCATCCTCGATGATCATGTTGTACATGACCATGCAA
GCTGTCATCACCGTGGCAAAGTAGCGAAGCTGGACGACGGAGACGATGGCAGCGTGAGAT
GAGGCTGCCGGAAGGGGTCAGTCTATGGCCGGTTGGCTGATGTCAAGGATGGAAGTGGGT
GGTGGGAGTGAGAAGGGCGGGCGTGTGGGAGCATTGGAGGGGGAGCAAAAAGAGGAGAAT
GACGTATGTACAGTATGTACCACCGACTGATGGGCCAAGGGGAAAAGAAGGGCGGACTTC
GTGGATGTCCGTTCCATGTCCGCGTCGACACAAATCTAACCCAAATTTGAGTTTAGAATG
AATCGCGGATGAACAAAAAGCGAACGCGCGTCCGTTTGAATCGACGTGTTAGACGGTGCT
TTCTGTCCAAGGCAACCCAAACAAATGCGCGCAGAGGAAATGAATCGCCCGATTGAAGCT
GTTCTTAGACCTTTCGTGGTGTACAATATCAATTGAATTATAAAAAATAATATTGGTGCG
CGTCTTTTCAATATCATCGACAAAGGGTAGAAGTTACACAGTGGTGATCCTTGCTTACGC
TATAAGGCACATACGAGCATAAGGCACATACGAGTTCGCATTGAACATGAAGGGGAGGAG
TCACTCAGCCCCCCTACAAATTAGATATCAGGTTACAAGGATGATTGCTCCTAAAAAAAG
GTTACAAGGATAATTATACTAAACCCTCGAGCACTCGCTTCTGTTCAGGTACAAATTATA
ATTTTTGATTGCTTCATATTATTATAATATCATTTTTAGATATCTTTTTAGTAATTTATA
TTATTTTTCTGGAGTAACCTATCGATTCAGTGCCCAGAGCTAGTTGTTGTTTTCTTCATG
TTTTTTGTTTTATAGAAAATCGATATCCCCGGACCTCAAAATACAATGGGGATTTTTGAA
GATTTTTTCCGAAGGAAGAAGAACCCAAAGGACATCGGAAGGGGGGGGGATCCCATAGGC
CACAGACGGCCAGCCCACACGGCTAGGGGCGAATGGTGGGGTTGTTTGGCGCCCTCTGCA
CCGTTATTTACCCATCTTTTTCCTATAAATCCTATATTCCCGAAACCCTCCTTACTATTT
ATCCACAGTTTTTTTCGCTACCGCATGTTCCTCCGAGTTCCAATCTGGAGTCCGATTTCG
ACGTGCCATCGGAGGGGGAATCCATCACCGGAGTCATCTTCATGAACCTTGCTGCCACCA
TGTCCATTTATGTGTAGTTCACTTAGGGCCATGGGTCCATAGTTGTGGCTAGATGACATC
GTCTCTCCCTTATGCATCAATATAATGTTCTGACTCGCATGATTGATATCGTATGATGTA
GTCGGTGTTGTGTTTGTTCGGATATGAGGAATTGCCACTTTATGATCAAATACTTCATGA
ATTATATTGAATCTCATATATTTCTTTTCTGCATAATAAATTAGTCATACATGCTTTCCT
ATCTATGTGGTGTTGTTTTCCAAAGTTTGATGCGTGTATCGTTAGAGGAAGTTGTGTATG
GTATTAAGTTCAATTTTGTTGTGTTATATATCCTAGTAAAAAAGGAGACAAGACAAATAT
TGTATTTTTGTCACTAAGGGTGAAACGATGGTTTTCTTATCACACGTGGATGATAGTTCT
ACCGTCAACATTATCTCATCCTACTTGTTGCAATGATTTGTTTTTCGTGAACTTAATACC
TTAAGATGCATGTTGCATAGTCATCTATAAATGGTGTATTAGTTGTAGACACAGTTGGAC
TAATAGTCCATTTATCCGAGACATAGTGCTTCTACAAATAATGCCATGAATAATCATAAT
CATAAATATAAATATTGTAATTTACTTGCTACCCCACTATAATTTTTTCACCACAACACA
TTTATCATGATTGGAGAGATGCCTCTAGTAACTTTTTACGCACATTTTTTTGGGGAACGA
AGCATGGAAAGCAAAAATTATCCTACGAGCACCCAAGATCTATCTATGGAGATGCATAGC
AACAGAGGGGAGAGTGTGCCAATGTACCCTCGCACATCGTTAAACGGAAGCGTATATCAC
GCGGTTGATGTAGTGGTACTCTTCATGAGCTAATCGCGATCCAGCACCGAACGGACGAGA
CCTCCGCATTCAGCACACGTGCGGCTCGATGACGTCTCCGCCTCCATAATCCAGCAAAGA
ACTAGATGGGATATCTACCAACACGATGGCATGGTGGATATGGTAGTGGAGCAATGCCAG
TAGGGCTTCGCCAAGCACCTCTGGAACTACGAACGAGGAAGAACTCGAGAAGACATGATA
GGGGTTGCCCGAGGGAGGGGAAAATAGTTCTTGTATGGCCGCCCTCCCCACCCCTCCTCT
ATTTATAGGATCAAGGGGAAGGGGAGCAGTCCCCTTTGCCCCTCCTCCAAGTAGGGGGAG
GCCCTAGGGAGGAGGAGTGCCCTCCAAGCCAAGTAGAGGGCGCTCCCCTTAGGGTTTCCC
CTCCCCCAGGCGCATGGGCCTTAGGGGGCTGGTGCGTCTGGCCCAATAAGGTCAGGGCGC
TCCCTACATCCCATGCACACCGTAGGGGGTGGATGGACCCTTCCGAACTCCTCTAGAACC
CTCATAAACCTTCTGGAACCTTCTGGAATCTTCTCAGTACAATTACGGCCAAACCCAACA
ATTTTCTCGTAGCCAAAATATGGCTTCCCATATATAAATATTTACCTTCGGCCATTCTGG
TGCTCCTCGTGACGTCCGGGATCTCATCCGGGACACCAAACAACATTTAGTCACAAACGT
ACATATCCCGATACTTCCCTAGCATCATCGAACATTAAGTGTGCGGACCATACAAATTCT
AGAACCATGTAGACATGAGGGAGACACCTCTCTCATGAATAACCAATAGTGGGACCTGGA
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTCAA
GGATTTAGTCAATCCTGTATGTAGTTCCCTTTGTCTAACAATATGTTACTTGCACGAGAT
TCGATCATCCGTATCTCCAGGCCTAATTCAATCTCATTACCGATAAGTCTCTTTACGCGT
TTTGTAATACAAGATCCCATGACTAACTCCTTAGTCATATTCCTTGCAAGCTTCTTGTGA
TGTTGTATTACCGAGAGGGCCCATATATATCTCTCCATCATACAGAGTGACA