morexGenes - Barley RNA-seq Database

Contig contig_37143

Source Contig contig_37143

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_37143 (3402 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location

Predicted Genes from contig_37143

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_51900	1	680 bp	MLOC_51900.1	Available	Available	LOC_Os01g13720.4, FRAME:+2, EVALUE:1e-19, 13101.m01510 protein expressed protein
MLOC_51902	1	1007 bp	MLOC_51902.1	Available	Available	None
MLOC_51901	1	939 bp	MLOC_51901.1	Available	Available	LOC_Os01g13730.1, FRAME:-2, EVALUE:2e-48, 13101.m01512 protein WD domain, G-beta repeat domain containing protein, expressed

CDS Structure of MLOC_51900

CDS Structure of MLOC_51902

CDS Structure of MLOC_51901

Contig Sequence (3402 bp)

>contig_37143 3402 assembly3_WGSMorex_rbca.fasta
GGGGGGGGGGGGGGACGGGGGGTATAGCATTAGAGCTTCTTACTCTTTAAATACTAAGTT
ACCTAAACAATTCAATTAATGACCCAATGTAACTAAAAAAGTCACAACACTCCAATTAGC
TGTAACATCAACGTGTCTACTCTGCCATTCACATGAACACCCTATGATATTAGGAACACA
ATAATTTGTTACAAATTTACCATTTTAGTGTGTTACCATCAGATACGATTGGATCACAAT
AGCACATAAATTGCAGATCTCTAGAACTAGATCATACTCTTGATTGGTCAACATAAAGTA
TTCTTAGCAACCCACAGATCATGCACACAAATGTTACAGGTCACGTTCTAGATTTTACGT
GCAAATTGAGTCTCATGTTGATTGAGGCAAGAGTTCACTTTGAGCTCTATATGAGATTAT
AATGCATTCGGCCAAGAAAAAAATCCAACATTTAGCAACACCCTGTGGTGCAAACTAAAA
GCAGAACAGTGAAAGGTTGTATGGTAGAATTTCCTGCATTGAGTTTAGTAAGCTAATTCG
TCGAAGTAGCAAATAAAAATGCATTGAACACGCTCAAAAGAGACAAAAACAGCACGCTAG
TGTGGAAGTATGATAATTACCCCCATCCATCGAGCCAGAAAACATAGCTTTCACATAATT
GGAGTTCTTCGCCATGCACGAAACAGCATCAATGTGACCATCCATTGCTCCAATAAATGG
CCTGGCAAATATCTGAAATGGGGAGCAACATAAGTCACATGAAAATATACAGTAAAGATA
AAACATAAATGCAGATGAGGAAGATGAGACGTACCTTCTCTAACTTTGCAGCATTAAGGG
CCCGAGTGTACTCAACAGCTTTCTCTTGACTACGGAGTGCTGGATCATAATTGCGGAATA
CTTTCTGTTGGGAGTAACAAATGCAATAGAGATCGTCATTTGTTGGCAAAAATATATAAT
AAAAGGCCTAAGCAAGTGACCACACAAACTTGAACCTGGGGCAATAGCATCAACACTATA
TTATGAATGTTTCAACTTGTATAGCAGCTACCATGCTAACACACCACAGAAGTATTATTC
GGTCGACACATGACCTAGATATCTGATGGCTACCAAATGTTAAGATGTTCCCCCAAACCT
GGCGAAAGGGGAACATAGCTCTAGCAGAAGGGAATCAATTTGGCCCCTCAAGAACTCCAC
CGTTTTTGTTATCGTTTCCAGTTGAAAGGTAGCCCTACCAATTTAACTGGACAAAATGAT
AGTATTACCAACATCAGCAATTGCACGCAAACGCACTCCATGCTTAGGAAACAGTTCTGG
CTTCTTATCCTACCAAATCTACAGCATGAGGATGATGACTATACTGGATGCAAAGCAAGG
AGTCGCAACCGACCGGAGCGGGAGCACAATCAGTAGATAGAAATTACGAATGCAACGAGG
GCTTCACCTGCAGGTCCTGGCTGCGCTCGCGCGTGAAGTCGTCGGTCGAGCGCGATATCA
CCTTCACCCTCATCGCGACCGCCGATGCAGCGAGGCAGGGCACTCGTAAAGGATACGCGG
CAGAGGCGCGGTGAATCCGTAGATGAAGGTGCAGGGCTAGGGTTTTGCGCCGGGCAAGCT
TCTCCTCCTCTAAACCCTGGTTGCCGCCGCCGCCGCCGCCGTCGAGGGGAAACAAAAGGG
AGAAGAGTAGAAGGCTTCGAGGTAAAGGTCGGCGGCCGTGGAACAACACAATGAAACTTG
GCTACCCTCAACGTTCAAGAGCCCATTGGGCCCATCTTACACAGCCCAAGAAGAAATAGA
CCGAGCAGACCTATGAGAGGCCCACATTGGTTCCTACTGCTTGTCTCTCGAGCGCAGGCT
AGCCGGAAACCATCTCCCCTCCTCCTCCTCCTCCCCCCGTCTCACCAAGCCAGCCACGAT
GGCCGCCGCCGCCAGGTCGATGCTCCGCTCGTCCGCTTCTCTTCTCCGCGCTGCTCCGGC
GAGGGCCTCTTCCTCTGCGGCGCGACCGTCCCTTCGCCGCGCGTTGGGAGCGCCCCCTCG
CCTCCTCAGGTACGACCTCGGGCCACCAGTCGACCATGCCGCCCTCAACTAGCCAGATAT
GAACTGATTGTGGTCGGCGTTGTTCGTTGTGCAGGTCGCCCGTCGAGGCGAGCTTCTGCG
TGGAGTCGCTGCTGCCGCTTCACAGCGCCACCGCCGCGGCGCGGATGACGTCTATGCTCG
CCGTGCCTGGCCGAGGCCTCGGGTGGCTCACGGAAGGTGAAACTGAAACTACTCTCCCCT
TCAAATGTGTTATTAATTCGTACTGCATTGGTTTCAAATGTGTATAGAAATTCATATGTT
GCGGTGTAATTCAAGCGATACAGTAGATTTGTTTTGACATGAATCATATGTCAGTAGTGC
TCCTATTGTCCCTAACAATCCAACTCAAGCTAAACGATGTAGTAGCAGTAACCTGCCATA
GTTGGTCACAGTGTGCATAATAACATTGACTTGCACTAACTTAAACTTGGTTAACATTGG
TCCAAAAGTGCATAATGATTTCTCTGAACATTCGACCAATTCCTTCAACATATGCATCAT
ACTATATGAACTTCAAACACAAATCGATGGATGCAACTCACAATTCTCTCTGGCCGTGTT
TCAAGCATTTAGTTTCATGTTAACGTCATTCTCCAGTCCTGTTTCTAGTCTTATTGACGA
AAGAGACCCACTTTTCTGTTTTCCTTTTTATTTCTTTGTTGTAGGGAAAGACGAAACTAG
ATGAAGACCAACTTGGGAAAGGTGACCACTAAAATATCTCCACCATTTCGTTGAAATATG
AGTAAATGTTATGTCCCTTACAATCTTAAACGACTACCAAACCTTGTTCCAGTATGTGTA
AAAGTGCTGCCGTGCCAACTTATTGCTATATGAATCATAACTTTGTCTGGGACTCTCTAC
ACCTTTTTAAAACCATGTTTAATCAGGCCGGCATAAGCCCGCCGTAGCACCGTCAAAAAA
AAAACATGTTTAACAATTGATAGATAATAATTACTACACAAAACATAGGAATGATAATGC
TTCCTATTATTGGAGGATTTCCTCTAAACTTAGTGACTAAGGCTCCTAATTCCACCGGGA
AGAATGAATATGCTCAAATTTGTGCATTGGAGCCCAAAACAAAAAATTACGATAGGTGTT
ACTCCCTCCGTAAACTAATATAAGAACGTTTAGATCACTACTCTAGCGATCCAAACGCTC
TTATGTTAGTTTATAGAGGGAGTACTAGTTATTGGCTGAGGCAGTATTGAAGAGAACAAA
TTGAGAAATAATCTAAAAGTTCTAAGCGGACAACTCGCTGAAAGTTTGTACCTTAAGTAT
GTTTTTTGCACCTAGCGTACTGTTTGGGACCCCCCCCCCCCC