morexGenes - Barley RNA-seq Database

Contig contig_37101
Source Contig contig_37101
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_37101 (10380 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_37101

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_51828	3	2381 bp	MLOC_51828.3	Available	Available	LOC_Os08g05670.1, FRAME:-2, EVALUE:0.0, 13108.m00561 protein HEAT repeat family protein, putative, expressed
MLOC_51827	2	804 bp	None	Available	Available	None
CDS Structure of MLOC_51828

CDS Structure of MLOC_51827

Contig Sequence (10380 bp)

>contig_37101 10380 assembly3_WGSMorex_rbca.fasta
CATGCGACGTTCCCCAACACTGTGGTGGCATTAATGTCGGTTCAAAGCGGACAGCCCCCA
GACGGGGCGGCGTGCGACTTCCTTCCGCATTCAAGAAGGATGATTGTTTGTCCGTCTGTC
TGGCATTCATGTCGATGCGGTGAACTAGAAATCATTACACATCCTACCCGGGTGTCCGCT
ATTTAAAGGCCGTAGGCCACCACACAAACTCGTACCACCTTTGAGCCCATCTCCCTCTAT
CCGGGCCGCTGGTGTACCACCTCTCCTTTGTTCCATCTTCAACCTGTGCGACCAATGGCC
AGAATCAACTACGGGTTGTGGAATACCCTTTCACTACAGTGTCGCCACGAAATCACTGCC
GAGGTGGGTGTATGGTGTGGCACACACACGTCCCGCATTACAACGGGAGAGGCTCCAAGC
TCTTTTCCTCCCGCATTACAGCGAAAGAGACTTTGACCTCTCTTGAAGAGAAGAGCTCAA
ACGAGGTGAACATTGAGGGGGAGAGGAGGATGAGGAGGCTCCCATGCTAGTTGTAGGCTC
CGCTGTAGCACGCGGATACGCATTACAATGTCATCACGACGGAGGTGCAGGCGCCACTAG
TCTCCCCGTTCTAGATGTTGCAGGAGGAGGAGCGATACAACTTGCGGCTCCTCTAGCACC
AAGGACTCACGGAGTGCTGGGTTAGTGGTGACGAGGAGGTCGTCGTGGTCATGCTTGCAA
AGAATTCAGGCTTCGTCCATGAACAGCGGGCACTGTACAAGTCTATGTGCAGTGCCCGTA
CCACCGTCGACCTCACCTCCACCTCTACCGCCGACGTCCACGGCTAGACATCAGGCACTA
ACGAGGAGTAGGGCATGGGAGATGGATGTTTCCATGTTCGACAAAGATCAGAACGTGCAA
CATGAATGTAGGTTATTTTTTGCTTGTAAAACAAATCCTAAACATTAATAAAAATGGAGT
GTCTGATTTTATAACTTCTGCCCATAAAAGCATCTTATTTAAGAAAATTATTTCAATTTT
ATTTGGTGCACCGAGTTGGATGCCCGCTCCCCTAAAGCTATACTAGAGGTGTCCGCATAT
TTTTGGGTGTGTCGAGAGGCTATAATAATAATAATGTGGAGCTAATTGTATTAGCACTTC
CCTAAAAGTACTGATTCGTTACTTTGTTTTGTCACTAAAAGACGACAATCATGAGAATGA
AGAAACTAACGTATTTTAAATCTTTTTTGAAAAGACTAATGCATTACTCTCTTCGTTTCT
AAATACTTTCTTTGTCCCAAAATAACTGTCTCAACTTTATACTAGCTTTAGTATAAATTT
ATACTAAGCTTAAGACACTTATTTTGGGACGGAGAGAGTATATGTTTTTTTGAGATTTTA
TTATGGATTACATACGGATATGGATGTATATATACCTATTTTAGAATATAAATTCATTCA
TTTTGTTTCGTATATAGTCCCTAATGAAATTTTTAAAAGATTTATATTTAAGGACGAAGG
GAGTAGTTCAATTTCTTTGTTTTCCCAAGTAAACATGATAAATTGTGAATGGAGAGACGG
CGTATCATTTAACCCGGTTGCTTTGCAAAACATGGCATCGGGAAGCGTTCGTCGGAAGAA
ATCCACCTCGATACGTTCGGTCTTGTTTTTTTTTTGTGTGTGTCAGTCTTTTTTTTTTTT
TTTTTAACACGGGAAGGGACTCGAAGGTCCCAAGCTGGCATTTATATCAAAAGTGTTACA
AGACTGCAACAAGGACTTGAAAGAAAAATGAAATTACAACGGTGTCAGTCTTATTATTAC
TGTAAAGTCGAGTTACGTAGAAGTACAAGTGGTTTAAAAAATACGGCACTCCGTGGAGTG
CCATCAGTCTGTCATTATTAATGACAAGAAATAAGAAAGCAAGTCCAACATTAACCCCCA
AAGTAGGACAATATTGTACTAGTGATTAAATACCGCACGAGCACAAGGAATATGCATTGC
AATGGGAAGGAGGAGATCATTTGGTCGTGTCAAATTCAGCAACGGTAGGTGGTATTCCAC
CATTTGTTTATCACGCTGTCATCCTCGGAAGACAGTGATATCAAAGTAGCAAACCTCTCA
ACTGTCATCAGTCCAACTGGGGTGGCATAGCGTTTTTGCTCAAAGGGCACCAACCACGTG
CTGCTCACGCATAAATGTATACTACTCCCTCCGTCTGGATTACTTGCCGCGCAAATAGAT
AGAAACGAATGTATGTAAAATTAAAATACATTTAGATATATTCATTTATATGATAAGTAT
TTTTCTGGGCCAAAAAGGATACAGGGATCTTATTCAGAATGCAATGGATTTTGGGAAGAG
AACATGCTATGAAATAATAAGCCAAAACCTTCAAAAAAAACTAATAAGACATACAGCAAA
TAAATGATATCCAGATCGGTTTGTGCCCAAATTAATTTATGTGGCGCCAAACAGGGAGGC
ACCAGCACCGGCCACCAGCAATTGCCCTAAAGGGAGGAGTGTGCCTACCCATCATCCATC
GAGTGACCTGTGTGCCTACATGTATCCATTAATTGGACGTTTATGGAATGTAGTGTACAT
GTTCTCCAGTACTGCTACTTTGCTGGTGGGCCGTGGAGTAAACGTTTGCATTATACGTGG
TATTTTTTTTTCTTGTAAAAGAAAAAGAAAGGCGTTGGCCCATCCATCCTCTTGTGATAT
GTACGCGTGCACTAGGGCGCATGTTGCTTGGTGATGGCGTATTGATTGTTGCAATGGTAT
ATACTGCAGGCTTGATGACTTGTGTGGAGGGTGCAATTATTAAACAATCCGGTGCTCCAT
TTCTACCAATCAGGATCAGGGGATGCATCAACAACTATCTAGCTAATGATGATACAACAT
TCCTTAAGCACTTATCAGAATTGTTAATTCTTGGAGAAGATGCAGTGCATAAGGAACCGA
CTGAAAACATGTAAAAACAAATTGTTATTTGAAAGAAAATAACAAAAATGGCATATACAT
GCATATCTTCCACCGACTTATATTGGCACAATACGTTCTAGCAGAAACAGAAGAGGGTAG
AGAAATAGCAGTGTTTTTTTTTTTTTTTTTGAAACGGAGGAAATAGCAGTGTTTCATGTG
ACAACAAACACCCTATTGGAATCCAGTCAAACCGAATAGAAAGAGAAAATGGGCCAGCAA
AGTGGCCCCCTCAAAGGTCAAAGAAAGCCTATAGCAAGGTCCATGAAATCTCACAGGCAA
AAGTTGTTGCCTGGAAAGATGGAACAGGCGGGTGCTGCCTCCTGTTGCCATCATTGTTGT
CAACTTGTTACCTATTCACCTTTAACCAGTGCCTGATCTACCTACAAAACAGGCCAACTG
AAATCAAGGAAGGCATTTAGTGTGCACAAGCTGTGGAAGTAGTAGGCAAGAGCATATAGC
ACCCAACATCCCTGCTTCTCCATTTATGGCGGTTGGTACCCCCAGCTGAAATGGCTGGCA
TTCATTTTCTGTTGCGCTCACAGATCCAAAATCCTCATGCTTGTGGTCTAACCAAGCATT
CAACCCAAGCCAAATCCGTAATGTTGCGGCTTATATCGAACTAAAGATACGAGTCTGTAG
TACTGATCTAGCTCTGGCCTTGGACAACATCAGCAGAAGAATCCTTCAGTATATGTCTGC
TACGTATATGCACACTAATGATCATACGTAAACACAATGTACAACATAGCCAAACCTGGA
AGAAATTCAACAACTATTTTTACAATAGAATACAACACGCAAAAGCAATTCTGCATTGAC
CGACTACTTGGCCAGCTGCCAGGAGCTGCCCATGATCTGAAATCGCTCAACTCAGCAGCT
TCGTCGACTTCATGGAATGTATCGACGTACAGGTCAGGTTGCCTCGCTTTATGGAAGCCT
CAAGAACCAATTGATAGGCGAGTTGGCTGTTCTAAGGTGGATCACCAATATCTTGCTCCT
CGTTAATGGGTGTGGAGACCACCATTGATTTTTGACACTCACGCTGTGCTTCTAGCCAAT
TGCTCAAATCTCTGAGCAATAACTTGCTGGTTTCCACTTGTATATACATTGAGCAAGGAC
ACTACAGCAGAAGATAACATAACTTTCTGTGACACATTTGGGCTGAAACCATCCTCGTCA
TTTATGGTCTCGCTTGCCAGAGGCTGGTCCTCGGCACTATTGAATGCTGAGCATAAACCC
TTCAGCCAGTCTTCCAGAAAGGATGCCTTCTGCTCAAAATGGAACGTGAATTAGATAGGG
CAACAGAACAATATATCTGTTTTTCAGTTACAAAAAATAGGTTGAAGTATTAAGCATTTA
AGCCACATATTATGGGGTATTTCTTAGCTGCATGCATATTACACAGGGCTAGAGTAGAAA
CCTGCTCTTGTACATCTTAGGTGTACAAACAAGAGCAATAATAAGTTCACTAAAATAATA
AAGTACTCCCTTCGATAAAAAGTAAGTGTCGCAGCTTTGAACTAAGGTTAGTTCAATCAT
AGTTCAAAGATGCGATGCTTATTTTGGATTGGAGGAAGTAATATAGGTAATTATACAAAA
AACAAACCAAGTGCTAGAAGCTCCCACACTAGGTGGGGTCTAGGGAAGGATTATACGAGC
CAAGCCTTACCCCTGCACAGTGCAATGCAGAGAGGCCGCGTCGAACCCAGGACCTCTTGG
CACAAGCGGGGAGTACTTCACCACTGCGCAAGACCTGTCCTAATATAGACAAATATAGTA
CCAAAATTTGTGCTATCGACGTAAAACATGAGTTCATTTTCAGGACTTCATGATAAAGAG
GAAACAGACACAAAAAATCGTATCATTAAGAACACTGCAGAGTTGGTTATGTTTTAATAT
TTCCATACATGACAGGGCCAACACATCCTCATGAAATTAATGAATCCAGATTCTCAAAAT
ATCAACCTGATCTGGCTGATATTTGCCGCTGAACAACATTATGACAGGTAAATACATCAT
ATTAATGAAAACACAACACACCGGGGCATGAGCCTGTTACCTTGATAAGAAAATCTTTCA
GGCTTTGGTCATCCTTCGGTGAAACAAAACCAAGCAAATGCAGAGCAGTAAACGTAAGCT
GTAAAAAGGAGCCAAAGGTTCAACAATGCTGTGAAACATGCTTTGGAGTAAACAAAATAT
ATATAAGCATCAACAACATTGACCTGTTTCTCAAGGTTGTCCCGGTGTTTGAAATTTGAA
GGCGATGATGAACTGTTTGAACTTAATGACTCAAGAACATGTGTGAGGCCTCTGACAACA
TCTGGGAAGGAGCTACCATAATCTACACATCCAGCAGCATCATGAATTCAGTTGCAGAAT
GACACCACAGGCAAGACACGAACCTCCAAGAAATGAAATAGGCAGCACTACCACTAATTT
ATCCAACAAAAGCATAGTATAATACAATCTTAATAATAATGACAGAAAGCTTTTTAATCC
CTTGGCAATCTGGCATGATATGGTATTAGCAAAATAAGCAAGATCAGAACTTAAACAAAG
GCAGAAATTAAAGCATTCAGTCAACTAACCAAGCCTTGTGACTGGCACTGCTAAAGCAAC
AGCCGCATGCATCCTTATTTTATAATTGTTTGAGTCACGGAGTAATAGTAGAAGTATGCT
ATAAACACTTGATGCCCTGTAATACAAAACACCTGAAAATCAGAACCACTAACATATGAA
GCTGGAGTACTCAGTTACTCACAGAGGTACAATCATGGTACCAGGTGTATATTTCTCATA
TAGTACTTCCAATTGACAAGGTTTACAATGGGGAGAAATAACTATTGCATAAATTTCTGA
CTGATTAGTTCCTTAAAAGATGAATATTTGAAAATAGAAGATGCGGGTGAAGGCTGTCTT
CATAAGATTTAGAATATTACGAAATAGCCTATGTGTTTCATTCAAATGATTCTAGAAGAT
AAAGAAAGAATATGTGTTTCATTCAATAGGTGGAGAGCATATGTGTTTCATTCAAATGAT
TCTAGAAGATAAAGAAAGAATGTGCTGCTTGTGCAATGGGAATTCTAAAGCAGATAAGAT
GCATAAAAGTTTCTGCAAAATTCAGTAAAATACTGGAAGATGTTGCATGTGCAAATCATA
CCACTGCATCTCTGAAAGTCTCACGGTGTCATTCATGAATAAGTTACTAAGAGCATGACA
AACATTCCACTGAACCTGTATGAATGACAAAAGACAAGTCGAATGGAAGCAGTTATTCAT
GTAAAATATCTCCACATTCAACAATCACATATAATAGAAAAATAGAAGGAAAAAAATCTT
GAACTTGTATCCTTTGCTAACTGAGGTGTTCCTCGTTAGAACAAAACAAGGGAAACATGC
TTTTTTTAGTCTCGCCTTGACAAAATAACAAGAGATCAAGCCGATGGATGTTTGTTTTAA
GTACGAGTGCAAAACCATTTCTTGCGGTACCTTTACATTTCCAGTAGTCACAGAAGACAT
CAAAGCCTGTACCATTGTTTGAAGACAGACAGGATCTCCATAGAAAACTGAATTCCTGTG
ATGGAGCCACAAAATTGTAAGCTGAAGAAACAAGCTAAGAAAAATCATGATGATGCATAC
AGAATATTAAAGGCTTTGTTGTTGTTGATGATGATGATGATGCATGCAGAATATTACCAA
CCTTGAATCATCGACTGAATCACAATGATGATTGAATCTGATAAACCTTGACAGATATCC
AAGAGCTCTAACGGCATTTGACTTTACCTGAATGAGCATAAATAAAAACAACAACACTGG
TACCATTAGCTACAGAAATATACAGATATCTTCCTTTTCTTTTCAATTTACAATCAAATA
ATGTGTTGCTATTCAATGTGAAGCCTAAAACAGGCATCTGAGCTAGTGAAAATGTAAAAT
AAAGAGAGAAAAAAGACATCAGTTGACAAGACAAACTTACTTTTTCGCCATCTTTGGTTA
GGCGCAAAGCAATTTCAACCAACAATGAAATTGTTGATTTATCAAGTAGATCTACATTTG
AAAAAATAGTAGAAAGATAAGCATGCCGTATCATTATATATTATGGATTCTGTAACCAAC
TAACAATCAATATGCAATACATACCTGCAGTAGGATCTGTCTGTAGTTCCAATGCTCTGA
AACGAATAGAAGAACAAAGATTGGCCAAAGCCCATGAGGCAGTGATACGGACCTAAACAT
TTAGATTGAGAAAATGTTACACATAGAATACTTGATAAATTTTAGTACAACAAAAAAAAG
GTAACAGTGCACAGGTATTAAAGAGAGATACAAATATCATACTGGAGTTGATGAATTTTG
TGTATTGAAGTCAATGGCTTTTATGAACTCGCCAGGTAGGCTAGGACTGCAGAAGGAAAC
AATGAGTTACGGACTATTGGTCATCATCATTCAAGTACCTTAAAATAAGCACTTGACTAC
TCGACACTGCAGCGCAACCAAAGTCTGAAATTTCCCTTCCAAAAAAAAGTCTGAAATTTT
ACCTCGACAATATTTGGGAGAAACATGAAACAATACCAATGGCTCGACATGCAGCTGATC
TCACTGTAGCAACTGCATCACTCAATGCTGCATGAACCTACACAACAACAATTGTGATAC
TCACAAAATTTTAACAGGTTAGGGTAACATAATGAAACACACAAATAATAAACTTACAGA
TGAGGAGGTCACATAATCTCTCTTGTTTACTGATAGGGAGAAAAAAACATCAGAGGTCAT
GCCAGCAAAACATGTGAGTGATGCTGTCCTGACCTAGAAACAAACAGTTAACTTATTTAG
TCCAGGAAAAGAAGACACTCAAAAAGGGAATACTTTCAGCAATACATAAAAGCATTTCCA
TCAGGTTCATGGAGCACATACTTCCTAAATTTAATGGAGCTGTTGCAAGACAAAACTATT
TTCTTATATACAGGACATAAATATCATCTGAAGACAACAACATGGCTAAGGAATATCATG
CTATATTTAGAACCAAGGATCATAAACGGCAACACAATACTCAAACATACATTAGTTGGC
TGCTTTGACTAAAATGGGAGCAGGCATTCTGTTACTAATCTGCTAAATCATGTTTCCAAG
TTAGCATTAACACCACAGATTATTGAGAAATAAATGAAGCCTAACCACATTCGTTCCAGA
TTAATATGATAATACATGGACAACACAGGTTCTAGAGGTGGTAGATTACCATAGCAGAGG
CATGTGATAAGCCCCGAGGGAGATGAGTTTCTAACACCTCAGTCCAACGGTTGGTTCCAA
GTGTAATGTCCAAAGAGCAGTTTTGTGATGGTCCAGGGGTTTCAATTTCAAAGTGAGGCG
CAGATTTAATAATTTTATTTACAGTGCAGTCTGAAATTTGCTGAATATCCAGCAATCTAC
ACTCTTTGAGGTCATCCGCGCCCTTGAATCCAGATGAAACACGCAGACACTCATCAATTA
CCTGACAAACAAAATCACAACGCGTTAATAGAAGATCGAAACTAAGTATGACCATGATGG
TTAATTTTACATAATAAGGCAATTCTAAGCTAAGAAGCACCGACACGGAAATACAGGCAC
AGGGATACTAGTATGGGGACACTGGATACAGCATTTTCCAAAACAGCCATTTGGGGATAC
AGCAGGGTATATAAGTGTTTAAAAAAATGGCAAGTAATAAAGATTTAATGATAATTTTTA
GATGAGAGCTTTTTTGAAGTTAGTACAGGATATATGTTGCCTCATTTCTATTTATGAAAG
ACTGAGCAGTCCATATGTAACACAACCCTCCACTCAGAGCCCATATAAGGCCCAATTCCA
GAAAACCCTACACTACTCAGCTCCTCCAGCCCACACATTTTCGTGCTACTTTCCTCCAGC
CGCCTGAGAGCTGCAGAGAGGACATGAAACGACTGCGACTGCGACACCACCTGTATCTTC
TTGCTCATTGACAGCTTCCATCACCGCTTTCCAATCGGCCCAAATTTTCTTCCTCGCTGG
CGGCTGCAGTCCACATCTTTCTCCCTGCCCGGAGCTTCTTCCTCATCGGCATCCACCTTG
CCATCTTCCTCTCCACCTGGATGTTCTTCCTTGCTAATGACCATCGAGGTGAGAGCTGGG
TGGCGGCATGGTCGTTGGAGGCTCGCTCCTGACTCCCCACCATGTCCACGTCATATCTAG
GCCGTATCCCGATTTATTTCCCTTTTTTTCTTCAGAGAAGATGGGATACATGTACCTGGA
CACCAATACGGCTGTTTGTGCCGTGTCTGTGCCTTTTAGGTTTCTAAGACCCAGATTGAA
TAATAACATAATAGCTAATGAAAAATCGAAATAAAAGATCAGGTGCTACATACATGTCAT
AACCAAAGAACCAAGTTTGTAAGAACCTGAGCCTAGAATACGTAGGCCTCATCTAGCAGA
TAATCAACAAAATCATCTATGAACAAAAGCATTCAACCAGTAGTCATCTTATGTTGGGAC
TTGGGAGAAAAAGGTTAAGCATAAATCCAAGTTCTTAATTTACCAGCATTTCATGTACCA
GAACCTTAATTTACTTTCCTTCACTTTGTTTACTTGTACTCTCTTCTTTTTGGGTTCTCA
AAATCACAGGTTCCTGTTGGGTTTCATCTCTAGCCTACCCCAACTTACTTGGGACAAAAG
GCTCTGTTGTTGTTGATGATTATACATCCAACTTCAGGTGCTGGGCCACTTTCTCAGCTT
CTGTAGCAGCTTAGAGCCCGCAGAAGCTTAAGACAAAAAGAACCGACTAATTAGTTTTCC
TCATAGCCCACCCCAAACTCTGTTGATACTAGGAAGCTGCTCAGACCAGGCTTCCCACCT
TTTCCATTTCACAACTGCCATCCAACTTGATACGGAAATTACCGGGGCTTGCCACTGCGT
ACCCCCTGCCCCTAGACTATGTGGAAATTCCTTTCGTAGCTCTCCCCTCCTGTCGATCAA
AGCATTCCCTCTCTCATGTGTGACACCACTGCCGACAATCCCTGCCTCCTGACGTTCTTT
GGTCAGCCAACCTCCTCCCCTGCTCCCCTGCTGACTTTCAACCTCCAGCGTTGTCCACCA
CAAGCAATGCCCTTCACCCACGAGCCGTATCTCCAGATCCAGCACAAGCACATACGAAGT
TGGATCAGTGCTTGTTCACTAATTGATGTTTGTTCCAGAGAACTACAATAGCAACTTCCA
TCAATTCATGCCTATTCCGAAAATCATACTTCCAAGTGTTGTTGATTGATGTTTGCTCAG
AGTGAAGAATTTTTATCTCATGCAATGCCTAATACTCCCTCCGTCCGGAAATACTTGTCC
TAGAAATGGATATAATGGATGTATCTATAANNAAAATAAGTCTAGATACATTCATCTCTA