morexGenes - Barley RNA-seq Database

Contig contig_37049
Source Contig contig_37049
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_37049 (7412 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_37049

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_51744	1	431 bp	AK248156.1	Available	Available	None
MLOC_51743	3	3172 bp	MLOC_51743.1	Available	Available	LOC_Os01g61930.1, FRAME:-1, EVALUE:4e-93, 13101.m06616 protein SAC3/GANP family protein, putative, expressed
CDS Structure of MLOC_51744

CDS Structure of MLOC_51743

Contig Sequence (7412 bp)

>contig_37049 7412 assembly3_WGSMorex_rbca.fasta
CTGGGGCCCCTGGTGCCTGGTTGACGTGCTGGCTTTGAAACGCTGGGGCGCCTGGTGCCT
GGTTGACGTGCTGGCTTTGAAACCCTGTGACTCCCGCTGCCTGTCCACAAAAATTTGCTA
CTCAAAAGATGGTATGCATAAGAAACATGGCAAACTGCCCTTCCAAAAGAAGAGTTCTCA
TCATGGTCATTGATGCAGATAAAATTTAACACATGCAACAAAACCGTCAAATGAAAGAGG
TATCACAGGTTCCAGTAATATTTTATGGACGTATTAGAAGTTAAATGCTGCCTCATTTGT
CATCCAATGCAAGGTTTCAAGTAGCTAGAAAAAAGTAGCTTCACTGTTACATACTCTCTC
CATTCCAAATTAACTGAAGCTCTAGCTTTTGTTAAGTCAAACTTCTCTTTGTTTGACCAA
GTCTATATAGAGAAAAATATACTGATATCTACAAAATGGAATATATGTAGTATGAAAATG
TATCAACCATATTACCATAGGCAGTTGCACAAAGCGATGTTTAGAAAGAAAAAAAAACAT
TGCCCATGAAAAGCTACATGGACATTCCAGAGTTGCACACAAAATAATGCAAAATGTGAT
CAAATTCTTCAAAATAAGAAAGCAGAACTGATAATAATACCTGGGAAGGTGCAGTGGGTG
CAACGGCATCATTTTTCCGTTGGGTAGTGCCCGGTGGAGGCGGCTGGGTGCTGGGATATG
CATAACCAGAATCACTGTTGCCAGCAACTGCAAAGCCACCGGAGTTTGGTGCAGACTGGT
CATAATAATTAGACCACTGGTTGTACTGTTGGGGATAAAAAGAACTTTGGGCAGCATTAG
TATCTGATGGAGTGTAAGTCTGATATGTCTGGGTGTGCACATCTCCAGAACTTCCTCCAG
ACCAGGCCTTGTTTTGATAATAATAGTTGTTGGTAGCATATGCTTGCACAGTCTGATCAG
CACCAGCATTATAATATGTGTTACTTGTAGGACCAACGTAAGATCCTGAATTTGGAAATG
AAGTAAGAGGCTGATATGCAGCACCTGAACTTTGATCTACTCCTTGGTGAACAGAAGAAT
CGTTTGCAGGTTGTGGATAGTTATAGTAATAATTTGGATAATGTGCAGCACTGTAGCCAG
GTTGAACAGAATTTGAGTAAGGTGCATAAGTATTGGTTGCATCAGTTGTGCCCAGAGCCG
GTTGAGTCACATGAGGTGCACCGCTTGGCACATTTTGAGGAGCTCCTGAAACTGAGACAT
CCCTTTGTGGATCGTAATAAACTGCACTTTGGTTTGAATTGTCCACTGAATAGTTCCAGG
AAGCCCCACTTGAAGAAGACCACGCATGATGACCAGATGCTGAAGGTTGGTACTGAGATG
AACTTGGCTGCTCTACGCTCCAGCTCTGTCATTTAGCGAGACCAATCATATTGTCAGATC
ATAATTATGGATCATGAGCAAAACACATATCATCAACCTACAATCAGTGTTCTAAAAGGT
GACGGCTACACACTAGGCACCACTGCTCCACCTAGCTGACACCTACCAGACACCAAGCCA
TATTAGGTCCTAGGCAGCAGCGATTTGAAAAAAGAACAGAAAAGGCTAGTAAGGAATCTG
CACATTGCTAAGAACTAAGAAATATATATACTACAAGTTTACAAGACTAATAATTATTTA
ATTGAATCAGGATGTTGCTTGGTCTTCCCATGAAATTTAAGGAAGAATGGGGTGTTTTTG
CAAAAGAGGTTTCAGTGGGCAATGAGCAATACAAGCTCAACCTCAGCCAGCCATCAATAG
CAGATCGGACGGTTGGCATATGATCCCAAAATGAGCGGACCATTACTGCCAAGTGGTTTC
TTTACTGGGGTGAAGATATTAAATCCAGTGGTAGAAGTCTGGAAGGAACCATAAAGGCAT
TAGCCATTTGCCAGCATAGCAAGTGATACTCATCAATAATGCATGACCAACAACAACAAC
ACCAAAGCCTTTTAGTCCCAAACAAGTTNNNNNNNNNNNNNNNTGAAACCCATAAGATCT
CGCGACCAACTCATGGTTCTGGTACATGGATAGCAAGCTTTCACACACCCCTGTCCATGG
CTAGTTATCTGGACGATGTGAAAGAAAATGATATTGAATCCTTATTCAAATTTCAACAGA
TTAGTGCATGTTATGGCCCAGTGTATTTATAGGATGCACCTTCTTGCCTATGTAAGGCAG
AATTCCCTGCTGATGTGGCAAATTTCGATGAAAAGATATGCAGAGAGACAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGATCTAGATGGCTAATGTAATAAAGCAAATGAGTGATTCCTC
ACAAAAAGGTGAGTAACAGCATCAATGAGACACTCCACATCAATTAACTAATATACATAA
ATAGCAAAACAATAGCATTAACTAGCTGCAAACTGCAGTTCGAGCAACATTGCTTAACAA
CTAAACACAAGCGTTCAGAGATTTTTGCTATTTACAAGCTGAACTTTTTTTTCTCGAGAC
ACTAACTATATAATTGGATGTTGATGCAATGGATAATAATTAAAAAATGTGACTTGTGCT
TAAGAAAAACTCAGTTGCTTTACAAATGGACAACCCAAATGTTAAACCTTCACAAGTATG
GCCAAAACCATGACCTCATGACACAGAAAATACATGCCTTGACAACACAAACCAATACCA
ACAATTGTGGCCCACCATGCATTATAGAGAACAAATCACCCAATGAACTTGCCATCAAAA
GGGTATCCTAATCCAAGTCCATGTGGTCACCTATGTCGCCTTGATACTTCATCAAGTTGG
CGGGTACTGGGTATCAGATGCGGTACTCAATACTGATGGAGGAAGTGACTAGAGTATGTG
GCTAATAGGGAAGGTGGAAGCTGTGTGAGCGAGTGGGACAGTTTTTTTTTTTTTGCTGCA
TTACATATACCACCGCATACTGTACTTACTGTGCATGTGTTGTAGACAAATATAGAGAGG
GGAGTTTGTTAGAAGAGTCTGTGTCAAGCTAGGAGTTTTATCTTAGATATATCCAACCTA
GCCTTAGGTACTCCCTCTGTCCCTATTTACATGGCACACGTATTTTGAGGTTCAACTTCA
CCCACAAAACGTGTGTGTCATAAAAGTTGTACCATCCAATTCACATTAAAGAGTGGTTTC
AAACAGTATAATGTTTATGACATATAATGATATAATTAATATACTGTTGGTGAAAATGAT
GGTCAAGGTTTAATCACGAGAACAAGGTCACCATGCACTCCCTCCGTCACAGTTTAGAAG
GCGCGGTTCCGTTTACATGCATTTCCAGAATAGAAGAGGATTAAGGCACGTGACATTTAC
TACTTGGTTAATTAGGAGTACCAGTAGGCTGCGTGCATAGTGGGAACGCTGGGCGTGCAT
GTGGGATGGAAAGGCTCCATGCACGAGGACTCCTCGTTTAGTGGTTGTGTGAGTTACTGT
GCATTATCTTCTCAAATAACTAGGCACCGTGTGGTTATTGTGTGAGCACTTGCAAAGAAA
ATTAGAGTCAATCAAGATTCATCTTGGTTCCAGAGATCGCTCATGCGCGCCTTTTAAACT
GTGACGGAGGGAGTAAATAGGGACAGAGGGAATTTATTAACAAGAGACTTTGCCTTGGGA
GTCAAGTTACGCTAGATAGGGATGAGGATTCAGCTTTCGCAAGCTGGAATTACTGTTCAG
TGAAAGGTAACCATCCTCGAATGTCTATATAAGGGATGTATCCAACTATCCATATTGTAA
GGAGGCAAGCAAGAACAGTAATCTGCTCTCTCTAGTTATTCTCACTTCTCAACCTATGTC
TACCCAATTCCTAGCAGTCCGGCGGAGCTTTTTGTTATGGTATCTCTGGAATATGAGCCA
AGGATCTTACTCTCAAGAGTGCTTCAATAGGCTCCACTCTCTCCCCTTAATAAGTCAGGT
TCCGTTAGCCTGGGCTGAGATGGGGATAACGAGTCAACAGCTGAAGCCCCCAACGTCCGG
CCAGACACTGGACAGGGGTACGCTCTGTAAATGTGTAGAGCCAAGTGTAGTTTGATATAG
TAGTAGCACTTCTAGGTCCCTTTCCGGCGACTGGATCAGTCCAGTGCTTCGGGGCCAACT
GGCTATCTTCGAACCGTAATTATCCTGCTGTAAATCTAGGTTCACATGGGCGGAGTCCCC
ATCTCCATCATTGATTGGAGAATGGGACCCCATTGTCATCCCTACTCCCTCTCTCTCAAT
ACCACTTCTTGGAGTCTGGACGCCACCTCCTTCTGAGTCTACTGTGGTCCCCATTGCTTT
TATATTTTCAAATGTATATACCAGCAGACCATTGATTCATCATATCTTGGTTGTGGAAAT
TTTTTGAACCACCGAATCCAAATCACCATCCATATCAGGGCAACTAGATGGTCACAGCTC
AGGGTTTCATCGATAGATCGTTGATCTTAGCAATCAATACCAGCTAGCAAGTTACAAATA
CTCCTTGACCTAGGTAATAACTAATTACAACACAGGCTCTCAGACACCTATAGCATATTG
ATAAGGTCATAGATCAGGGGTTTCATCCATAGCTCTTTGAGCCCATCTTCCAGTGTTATG
TGTATACATGTAAGCGTTGCGTGTCTGCGGCCAGAACTCGTTGCAGCCACAACAAATCTA
GAAACTGCGACAAGGTAAGAGGAAGGCAAACCTGCTTCAAAGATTCAAAGCATGTTTTCA
AATTAGGAAAGAGCCCAACTTGAGTAGTATTCCTAATCAGAATTGGGGGCGGATCAATCA
AACCAAAGAACTGGAAGAAATTCATCTTTTATTTGCTCCAGAACGCCCTAGCCTCCTCCA
GCACACACCCAGCACCTAGGGCTTCCAGCCCTAGCCCTAGCGTGTGCCCCACGGCCCGAG
TGCAAAGTTCCTGACCCTAGCTTAATCCTGCTCCACCGCCTCCGGTCCGAGAGTTCAAGC
ACTAAAATCCGGGTAATGCCCATTTACAAACTACCACTAGCATCGGATAACATCAGTTAC
AAAAAACTGGTCACCATACATTGCCCGGACAGATGAAGCTAGCATAAAACAGCGGTACAT
TTAAAACATCACAGCTACCATGATAGCTCCAGTTAGACATGTTCAATTGCCATGCAAGAA
CACAAACAATTCTAGGTAATTCATCAAACATGAGCATCCAAAGATAGGTAGCCGACATTA
AGCTTCCCAAAGGATGACACCCTGAGTACTCCACAACTTTACTTTATAACAGTACTACCA
CACTGACTAATTACCAGGAGGGCTAAATCACGAGATGGCTATATCATGTAGTATATGTGA
ATGAGCAAAGGAACAGAAACAAAATACACTACATCAACTAATTCAGTTGTTAGGCTGGTC
GAAATTCCTACACTTGTGAGGCAGTAAAATAGCAAAACTCGATATCAAACACAGGCTCCA
GCAGCTAGAACAAGCTATCCGCGTGCCCCGGGTGACCTAGCTATCCCTCAGCGAAGGCGC
AGGAGCAGAAGCTGCCATATAATGCGAATCAGCTAACAACCTAGCCGACTGCCCGGCCAA
TCTGCATCTCACGGTTCTCGAGCCATAGCCGGGACAGAACGAATCGCGTGCAAGCCCGGG
AAAGGTTAAAACAGGGTGGAAGCAAAGGCCCGCCAAGCTCGGGATTCCTGAGAGACGAGG
AGCGGCGGCGCAAGCATACCTCGTTGGGCTTGGGGTCGGATCCGGCAGCCGCCTCGCCTC
CCTGAGCCGCCATCCTCCCGGCGCTCCGGAGCCCCGGAGCTCGGGCTGAAACCCTAGCCG
CTCGCAGCAGAGAGCAGAGCCCCCCGGTTTCGCCGCTGGTACGGACGGGTAGAGCCGGAT
CGACAGGACGCGCGCGACAAGCGAAAATGAGGCACGCGGGGAACCGGAGGCGTGTGGGGC
GGGCGAGGGGCGATTGGCCGAGGAGACGCGGGGGAGATTCTGCTGGCCCGGCAGCGGCTT
GGTGGAGAGAAGTGTTGTGGGGGGCGGCGGAGTGGATTGGTGTCTGTGACCGCGGGAGGA
GAGGGGGTCGGCGATGAATCGGGAGGGGGAAGCGCCGACGACGACGAGGAGCGGCGAAGA
ATTGTGGGTGGGTGGGCTTTATTGGCGGGTCCTGGGTCGTGGGTTGGTGTGCTGTGGTAG
GGGAGCAATGAATATGGGACTGGACACTTGGGGAGAAGATGGGCCTGGGCCTGGACCCGG
ACCGGTTCCGTCAGACGGCCCGTCAAACAGAATATATAGACCCAAATGCTCAAAAAAAAA
TACTGAACATTTAAATTCGTGTACTGCGCATTTATAAATTTTAAGAACATTTTTCATGGA
CATTTCAGAAAACAGGTAGACAACTTTTTCATTTTGTTTGTTCTATTGAAGGAGCGATAA
GCCTTTTTTGCAACCAGGAAATTAGGAATCCCAGCGGAACCTCAAACGTCTTCCCTAGTA
GGAAGCTCAAACTGAAAGGCTTCCAAATCAGTCCACTACTTCTGCCGTCCGTTTGATTTG
GAAGCGCATCTCCAGAGTCCTGGCAAAATAAACGCCTAGAGCAGCACGATGGCAATGTCA
GTACTGGAACGAGCACAAGTAGGCTTGTCGAAAAGGGCAGAAAATTCAGCTAAACTGACT
TTGAGGGGGGCTGGCCCAAGCAGGATTTACCGTACGTAAAACAAATCCAAACGAATTTGA
CACCATCTGCAAAATTGTGGCCATATGACACCGTAAAATTAAAGTTCTTCACAGAGACGC
AGGCAGGAGATAACCAGGTTACCAGCGATGAAAAGGGATAAACGTTCTGCAGACTGCAAT
GCATCCCAAACGGGGTATCAGGAGAAAGCAAGGGAAATTATAACGCACGAAGAGAACTTA
TCGGCTCAGCGCTATCACCTGCGCACTGCACGATTTTGCAGAAATAATCACGCAATGAGT
TGGGGGATCTGCAGAAGACAGCCGCGGATCAACAGCCAACACAGCTGAAGAAAAGAAATA
CAGGACGGCCAGAAAACAATTGCATCACAGGATTTGCAACAGGCTTAACGCGGTAGCACA
ATTAGTCGCAAAACAATGCGTAGTAAACAAGAACAGCGTAGTCGGTAGCATAATTTCATA
ACAGAAGGACAATTTTGTTAACTCTGGAACCATACAACTCGGCAAACACAGTATTTGCCC
ATCAGGTTCAGAACACGGAAGCAAACTACTAAACATAGGGTCCTACTACCAAGCATACAA
GGCACAGGACCTAGATGAACTACAGATTTCTCCCCTCCGGCAGTTTCTTGACCGCGAGCC
AGGGCTTGTGCGCCACGGTCAGCCAGCGCCGCGGCTCTTCAGCCGCCGAAGCCGTAGAGG
GTGCGGCCCTGGCGCTTGAGCGCGTAGACGAC