morexGenes - Barley RNA-seq Database

Contig contig_36944
Source Contig contig_36944
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_36944 (7451 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location
Predicted Genes from contig_36944

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_51494	4	3348 bp	MLOC_51494.1	Available	Available	LOC_Os09g17760.1, FRAME:-2, EVALUE:0.0, 13109.m01708 protein expressed protein
CDS Structure of MLOC_51494

Contig Sequence (7451 bp)

>contig_36944 7451 assembly3_WGSMorex_rbca.fasta
GGCGGCAGCTCCTCGCGAGGAATCTGGGATAGCTCCAGCACCGGCGACGGGTTGATGTTG
AGGAGGAACGGAATCGATGACTTGAATCGGCTCCACTTCCTAGCCACTCCTGGATCCGAA
TCCTCTGCCTCCCGCATCACCCAATACACGAGCTCGTAGTCCATGCCTCCGTCGTCGCCG
CAGAAAGTGCTCGTTCCGCAAAGGTCGCCATGCGGATTATCTCCACCATAATCCCCGGCC
AGATTGTCCGATCCGGGAACTTCCCTCGAACCACCCACAGCATCTCCGCGCGGGCCTCCG
CCGAACAAAGCTCTGCTGATGTCAGAAGCATCATCGGAGTTGGAGCGCCGAGGGCCCGCG
GTGGCGACACCATCTCCGCACGGAGTCGCCGCACTCGGATCCTTCTTCTCTCGCCCGCCA
TCGAGATGTTGAGGAAGAGGAGAGGCCGAGGGAGGGGAAGAGCACCCGAGGTAGTCGCGG
CACTCTGGCGGACGGGGATGGGGCTCGTCGCCGCGCGTTGGTGGCTGGGAATGGAGGGGA
GACTCGAGGCCGAGCGGTGATGGAGGGGATTTGCGGTGGGGCAGCTCGGGGGCGGGCGGT
GGGTGGTGGTAATTGCCATTAATGGCGGTAGGTGAAGACGTGTCGCCAGCCGCTGCGCCC
CGAGCGGTAGCTGGAGCGATGGTCCTCACAATTTATTGTATGATATTATCTTCGTATTCA
GAGAACCCTATCTGTTTTTTTTTCTTCTCTCTCTTCTTCTTCTTCTACCTTTGTCTGAAA
TTTGTGCAGCTCTCTTCTTCACCAACCTGGCATTTGCTGCGGCGATTGTTGGCTAGAGGG
TCGCAAGGAAGCTGATCAATTGGTGTTAGAGCGGGCATCATTTATCATCTTCATACTGTC
CTCCATGATCTTCGTCAGCGCCATTTCTCTAGGTACCTACCTAACCTACCTGCCAGTTTC
CCTCTCACTGCAACCATTCCGTTAGCGTCGCCAATAACAGCATACAAGAACAAAAATAAG
CCAAAAAGGAGTTGGTTTGCAGATGATTGCAGTGGGAGGTTTCAGTGGATGGGACGGTGT
GATGTTGGTTAGCAGATGCCAAGTTGAACCACAAGGCCAGGACATAATTCCAGCCACTAG
TTCCAACATACTAGTATTTGCTAGTCACCCAATGTAATCGATGATTAGATGTCTTGTACT
TGCAGAATAATGCTATTTCTGTCTTGTGGTAAATTTAGAGCTCTTATCAGAATGCCTTTC
TTCATAGGAGTCAATAAGTAACTCATGTTATGTTTGCCCAGCATATAAACGAACACACAA
GTAGCAACGATTTCAAACAGCCCAGATATTACAGGTGCGCAGCGCAAACATATAATCCTT
ATTCTGTAGTTTATGCCCTGCACTCGTATGATCATATTTGTGCTTATTCACACATGAGTA
TATGCTTTATTCACACATGAGTATATGCTTTATTCCAAGATACCCGCAAGCAAGCTGACA
CGCCTACAAAAACTCCAGGATCGGCAAAAATAACTCGTCTTATGAACACACACACACACA
CACACAATCTGACTACTTAATTTTTTCTTCACGCGGTGGCAGCACAAACATGAGAACTGG
AAGCGTTTCCTTATTACCTCAATTTTGCATAGGCGATAGGCAGCAGACATACACAAATCA
AAGCTTCTTTGGAAACTTGTATGTTTTCTTGAGGAACTTTGTGGCCGCCTCATCGTACCG
GTAGCACAAAACTCGCAGGATAGTGTTCGGGTCATTTGCACTCCACTGGGCGGGCACACG
AGGAGGCTTCGGGAAGCTAGATTTGGTTGGAGATCCCTGAAGTTCAGTAATCGCTTGCTT
GAAACGCTGGATGAGGGACTCTGTGTCCGTTCTTAATAGTGGCAGAACGCTTTTCACCTC
CAGTGAAGCCTTGTCAACAAGTTCATGTGGCAGGCCATCACCATTTGCTAAGTACAATCC
TCTGAGAGCTCTGAAATCATTCTCTATGATCTGAGCGTCTTGAAGTGTGAAGGCACGTGT
AGGTCCACCAGCAAGAAGCACCAGCAGGAACCCATCAAAGGAAGCTTTCATCAACGCCGT
TATGAGATGGTCCCGCGACTCATTATGCATTATGCCAGATATCACCCCAAGGGTAGAGTG
AAGCTCTCTCAACAAAGGCTCCACCCTGTTTGACACAGTACCACCAACATACAGGGTGTC
CAAAAGGACATGACTCAGATAATTGAATACCACCTTATGCGCTGTTGCGTCGCACAGCTG
ACGGATGCCGTCTTGGCAACTTGCCTGAGATAGCTCAAACTTGATGTTCATTCCATCAGT
GGTACCATTACCATCCTGAGATAATTCACAGTTCCTCAAGCATTTTTTCGCCTTCTTCTT
CAGATTCTCCACCTCAGTTTGGATGTAGTGGAGTGTATTTATTTGTACACAGAGTTCAGG
AAGATCGCATCCTTCCGACTTTCCAGTAGAAGATCCAACTTGCGATCCGCGATTCAGAAG
AGCATGTGGCTTTTCCTTTTTCTTGAATAATTTGGATCCAACATCGCATCTTGTTAAATG
AGGCAGTTGTGGAGTAGCAGTACTCTGGGTCCCTGTGCACCAATACTAAATGAATCCACT
CTGGGTAAATACTGAAATAATTGTATGAGAAAAGAATCTTCATGCTCAGACATACCATGG
CAAGATTTTGCTTTCGAGACATAATACTGTATGATCCCATCGAGCCCAGCTGTTAAATCA
GGAAACAAAATAGAGTGCACTGATATTGGCAACTGGAAAAACGCATCCAAAATTTCATCA
ATCATCCGTAGCATCTTCATGGAAGAAGGAGCAAAGCTCTGCCTGTTAGCTTTTGGATTC
CATGTCTGCATACGGATTCACAAAATTAGTGGAATACTGGTAAGTGGTTATTCTATGGTG
ATATCAGACTATACAACATTGCACAAAATAATGTGACAGCTCTTGGCATTCAATGACATC
AGCTATCATCCAATAGATGGTTGAGAATGGCTGCATATCTAATATGCTAATCACTCGAGT
TAGATATTAACAGTTAAGCACATCAATAAGCATGCAGCGATTGCAATTGCAACATAGGAA
AATGCACCTTCTATTGTCCATATTAAAGTACAGCACTAGTAGTTACGTGCATCAGCCAGC
TGAAGAAATAGGCTAATCTGATCTAATAGCAACTATGAATAAATTAAAAGCTTGCAAAGG
TAATAATTAACGGTTGATGAAATGATACAACGTGCTAAATCCATGGATAACATTGTGAAA
GGCTAAATAACTGAATTTGCATGGCTACTGAATTTGCATGGCTACTATATTATAAATACG
GTATGGGACATTGAGTAGGATCACCTCCTGCTGTAAACTTTGGTCAACCCATCCTTTAAG
TTTGTCCACTCGTTCTTTCATCCAATCTTTGACAAGAGCAGCAATTGCATTTTCAGCTTC
ATACGGTGGCATCTGTCTAATCAATGACTTGCCTCCGTCATCACTATCCAGAAAGTCTTC
AACTGCAATATTAATCAGATTCTTCTCTAACTTATCAGCAGCATCAAGCACTTGAGCCGT
GTCTGGTGTGAACTTTGTACGCCCAACCGTAAATTGCTTCAGCTCATTACCAAAGCAAGA
ATGAAGGGTCGTAACTGCAACACCTGAAGCAAGTGGGTGCCATTTCTTCAGTATTGGACT
GTAGATATTTTTCTCCTTCGAAGCAAGGTCACTAATATCCTTTGCGAGGATTGCAAGAAC
TGGCACGGGATTCCTTGATGATCGCTTTGAGTCTGCCTCATCCATTCTCTGCACAAATCA
ACAGTGTCAGAATCAATAAACATTACTGACATAAACACCAGAACGAATATCAAAAGGTCA
ATATTAAGATCAAGCATTTTATGACGCTTCCTAAAACTATAGATGAGCAGATCAATATTA
CTGAGAGTGATCAGCGATGTTTAATGTCCAATTTTGCAGCATGTTGAGATAAAAGAAAAT
GTTGATAGTAACAATAAATGAGTACGAGACTTGCATTATTCATCCTTTGAGTAATCACAG
TTCAAACTTACTTGAGCAAAAGCAGTACGGAGCGAGGACCGTATATAGGTTTCAATCTTG
CCACGCACCACATCAGTCTCTTTTTTCCTTTTACCGGGGTATTTTTGAGATATATCTTCA
AGAAGAATCTTCGCAGCTGAGATTCCTATTGCGACAATACCTTGCATCGAAACAATATTG
CTAGCATTGAAAGTTTCATGGTAGGCTAGCAATCTTTTCTCTGTCCAACCTGTTATGGAA
CTCAAAATGGAGACCAGTATGTCACAGTAATCTGGATCTTCTGTGGTTTTTGCATCTTTT
ACAACTACACTTAACTGATTCTCTGCAGCAGAAAGTAACTCAATATCTACTTGGTCCGAT
GTGGCAAAATGGTTGAACAACGCCCAGGTAAAACAGAGGTTGTGAAGCATTTGATTAATC
CCAAGAATAACCCAAGTCTTCTTCAATAACCCAATCACTTCATCAATTTCATCAACCACA
GTACCGTTTTCACTATCAAAGCAAGCTTCTACCAACATTTGATAGATATGGAGATTCAAT
GGAAAGCCATCTGCCCAATGACATTCATCAGAACTTGCACCTAGGGACCTACCAGCAAGG
GACTTCACCGCACTGCATAGTTCCTGCATCGATTCCAAGTTCTTCCCAGTTTCAAGTGGC
TTATCATACGCTCTACTTATTATCTCTCGCAATGTCTGTGCATAAATGTCAGATTTTCTC
AAGGGGATAAGTGGATGAACCAGCAAACCAGCCTCAAGAAGCTTCAAGTTCCTACACTGC
CAGGCCTCGTACTCATGTGGATCAGGGAAATCTGATGCTTTAGATCGCTGCAGGAACTCT
AAGGGCAAAATCATTGATTCTGCACGTCTACCTAGCTGCTTGAAGAAGAAAAAGTGAAAT
TAATCTTAATGGTCAAACTATTTTTGTACATGACAGAGATTTCTATTGTTTTACATGAAT
AAGTTCACAGCATAGCTGATGGTGGCTCAACTATACAAGTTAATGGTGCTCTAAGCAATT
CACTTGCTGAAATAGAATGATTGCCAGTGTTAGAGATTGCAAATTCAGAACAGACAAGAA
TTCCTACCAACTTTTTTTTTTTTTTTGAGGACCATCCTACCAACTTCCTCTATCTCGAAA
AAAATCCGGCTAACATACAGTTCATGTCTGATATGTCTAAAAGGAGACATGCATTTCAGG
TTCTCCATGTCAATAATGACCTGAAATTGCAATAAAATAAGAATCAAAGGTACCCAAACA
AATCTCAACGAACATGATATGAATATTAAATTCCATTTTTCAGTGTGTACACATGTCACA
GGTAGAGCATATATTGATTATGATTTCAATGCTCAGTTTCTGCTAATCTATTCAGGTTAT
TATTGTCTTGCCATGTGAGCGGTGAATGACTGAAGTATCGACATTTGACAGTGATAAAAA
TGAACGACTGATACAAGTCCATGAAAATATCCAATGAGAAATTAAGCAGAGATAGTTCAC
AGAGATTGTATCAGATAATATATGTCGTAACTACCAAACGCCACAACTGAAGTTTGAATA
CCTCACCATAGGAAACACAACTAGCAAATTTACACTCAGAGCTTGACGAGGTCACAGAAA
AGAATATCAAATAAAGAGAACCCTGCTTATTTTTACATATTACACGCACAGCATTATCAA
AAAAGAATCATATACTCAGAATACCAGGTTGAGATGGACAACCCAGCCCATAATTGGAGC
ATACGTCTGCACTCAAGCCCCATGTGAAAGCACGAAAACACCATCATTAAGCAACCATTG
GAGCATAAAGTGCAGGCTGACAAAGGACAGAGACCAGGACGAGGGAATAGGTACTTGCAT
GCATCACTGATTCATGCAATAATCACTGCATTAAATTGTTGTGCAGCAAGAAGGATTGAG
TAAATTCCCTTCCACTTATCTTGTAAAAAGCAGCTGGTCACCACGTACGTTTCAGTTGCG
ATGTTAACCATATAGAATAACTCAAGGAAAGTTAATTCCATATGGTCTCCCAACTCTCAA
GATGACCAGACTGAGACAAGCCACTGGCCGCTGAACGATCACAGTACGTATTGGCCTACC
AATCACACACCACTAACAGGCTAACACGAACCCAGACGAGACGAGAGATCTAACACAGCT
ATGAAGCCCACCGACACTGCAACAACCAGCGAAACAAGCAACCGAAAATAAATAAAGGGA
AGCTACATTTTAGGAAGCGAGATATGCGACCTGGCCGGCGGCGATGCGGAGAAGCCCGCG
GCGGATCCTGGAGTCGGCCTGCTCCGTGACACGTAAGTTGACCCGCACCAGCTCCATCAC
CGTCTCTGGCCTCCGCGGCGCCGCCGTCCCGGCCTTAGACGACGCCGAGGGACTGAGCCC
GAGCGACCTCTTCACCCTGCTGGCCGCCGTCGACGTCCGCGAACGCTGCAGGCCGGAGGA
GGACGTCGAGGTGGATGTGGAGGATGTAGAACGGGCGCCGGTGGAGGCGGACTGGGGGAT
GTAGATGAGGGGCCTGCCGCCGGTGGCGCGGGAGGCGGCGACGAGGACCTCGTAGGCGGT
GGTGCGGAGGTCGGCGTCGGAGAGCGGCACGCCGAGGCCGGGGAATGGGGCCGCGAGCGG
CATCGCGGAGGAGGAGGTTGCGGTGACTACGGTGGTGGCGGCAGTTGCGAGGTCGCAAGA
GAGGGAAGAGGTCCAGGAGGCGGAGGCGGAGGCGCAGCGGGAGTCGGGGAGGAGGCGCGC
CATGCTGCCCATGCTTTTTGGCTTATTTTTCTTCTTTGTTTATTGTTATAGCTGCTGATC
GGTTTTGGGGTTAGTTGGGGTGTGTTGCGTTTGAGTGAAACGTCTCGTTTGCAACAAACC
ACCGTATAACCCACAACCGCAAAACTACTTTTATTTTCCCTTTTGAATTGGACAAAGTTA
CCTGTGAGCAAGTCTTGATTTTGATTGGACAAAACTACTTTTATTTTCCAGCTTAGAGCC
CTCAGGGCAGCTCCGGTCCGGACCAAACCTCCCACAAAATGTATGGATTAAACGTTCACG
CATTTTTACTCATCTAGAGTTGGTCATAAAAAACCGACATCAAACTAGAGGAGATTTGAA
AGAGTCCGGACGCGGACTCTCACAACATGGACTCTTATTTTGCTCAGCCTCTGTTACCTG
CACACTTAAAACACGTTGAGCAACTAAGCTTTCTCGCACCGCGGGCCACTCCGGCCACGG
CGGCCACCCACCTTTCCTCGCGCCGCGGGCTTCTCCGGACGCGGCGGCCACCCACCAGCT
TTATGGCCCGTGATACATCTTCAACGTATCTATANNNTTTGATGATTTCATGCTATTATC
TTTTCAAACTT