morexGenes - Barley RNA-seq Database

Contig contig_369214

Source Contig contig_369214

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_369214 (3566 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012

Predicted Genes from contig_369214

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_51430	2	956 bp	MLOC_51430.2	Available	Available	LOC_Os04g31250.1, FRAME:-3, EVALUE:1e-11, 13104.m02987 protein DEFL49 - Defensin and Defensin-like DEFL family, expressed
MLOC_51429	1	1033 bp	MLOC_51429.1	Available	Available	None

CDS Structure of MLOC_51430

CDS Structure of MLOC_51429

Contig Sequence (3566 bp)

>contig_369214 3566 assembly3_WGSMorex_rbca.fasta
CGGCCGGGGAAGGAGGGAACCGCTCTGGCGGCTAGGGCTTCGGGGGCCCCTAGCGTCGCC
CGAGGGGAGGCGACGCGAGGGGGTATGCAAGGATCGACCGAACAACAACATGGATGACAA
TGATAAATCTTCCATAATTGATATGACGTATGTATATAAAGAAACTACATGTCGTCTACC
AACAAAATAAACCTTAGTTCCACATAAAACTAAATGGCAATAATATTGCATAAGAAGTAC
TCAACCATAATGAGGAATTTCATATATCAAGGTTGTTGATGAAGATGATGATGATATAGC
AGTCGAACAAGACAACGTAGTAGTTGTGCAAAACACTTCCTAGAAACATCATCTCTATAC
TGCATGTTTAGGCCGCCAATCACCGAGAAATGTCCGGATACAATTGCTTTCTTCGCGTTG
CTGAACGACAAGGAAGGTTCGACGGAGGTCATGATGGGGTGTAGTGGAGAACATATGGGT
TATGCTGCAACATGAGACTCTCTTAATAGGGACGTCTTCCGCTTATAGCCTTAGTCTGAT
GACCCTCATGTATGCATAATCATATACTATATGCGAGGAACCAACTCCTTGCATATCCCG
ACCACGCACCACCTCCTAACTACACAGTGATATGCATGCTTAATTATCCTCGGTTAGTGC
GTGGTGAACCTTTTGAGCCGTAAAGAGGGGGGTATCCCCTTCCCATGGATCCCATGATTT
AGGATCCAACATCCAATATTCCCAGACTCCCTAGTGAGACAATGCCCCCTCTTTCTCTGT
CTATACCTCAGGGTGATGAGAGGGAGCCGGTACCCTAGGCCATTGCTCCGGTGATGGTAG
GTCTATAAAAAAGGTGATGTCTCTGATCTACGGCGGCGACACGATGGCATCCCTTGTTGT
AGAATAAGGTCTGCCTGACTCACCTTCATTTAAGTGGTGCTTCTTCGTATCGCTAGGAGG
CATGTGGAGGATGATGTGTGTCCACAAATCTGGTACCCCCGTTCCAGTTTTTTCTTCCGC
GGATGTGTCTAGGTGGCATTGTCCTTGTGTCTAGGTGGTAGATGTGTCTAGGTGGTATCA
GTATCAGTATCAGTATCAGTATCAGTATTAGTATTAGTATTATTCTATAATACAATTATA
ATTATGATATTAATAGTAGGTAAAGATTAGGTATAGATACAGATATAGATATAGATGTAG
ATATAGATATAGATATGGATATAGACGTAGATATAAATATAGATTTAAGCCGTTCGTTTT
CTATCATTGTAATAATAATATAATACTCCCTCCGTTTCTTTTTACTCTGCGTATAAGATT
TGGTCAAAGTCAAACAACATAAAGTTTGACCAAATTTATATCGAAAAATATGAATATCTA
CTATATTAAAATTATATAGTATGAAAATACATCTCGTGGTGCATCTGATAATATTGATTT
CATGTTGTGAATGTTAATATTTTTTTAATATAAAGTTAGTCAAACTTTATTAAGCTTGAC
TTTGACCAAACATTATATGCAGACTAAAAAAAACCGGAGGGAGTACATAGATAGATAGAT
ATGGCCATCTATGTAGGACCTCTTCACGCTACACCTCCAACGGACTCTATGGATTTCATG
CACCATAATCCACTAGTCGAGGAATATTGTGATCCAATAAAGATAAAGGGCACAACGACC
TACAACAATACTTTAAAGATAGAATTACAGCTCGAACATCGATGTTGTCCAATCTGACCA
CAAGTGAAATCTGGAGCTATCACCCTCTGTGCGGAACTTCAATCCAACCATTTCAACAAG
GGTACGATGTGAAGACTCTTTGACCTTCAGTTATGTATTTAAAAGAAGTTAGCATCTTAA
ATTTCCAATTTTCATCTTCACAATTATCCATGTTAGTTTTCGGTATTATACACTGGCTGA
TTTGTGGGTATCCTAAAGGAACCCTAACAATCTTTGCAACTCCTTCAGATTTTGATATCT
CATTTGTTAGGCGAGAGGAGAAGTATGATGCACATTTATATGTGCTATATAAGCACGCTA
TTAGCAGCATAATTGCTTCTTGTTTTACTATTATTCCAGATTTTCTAACTTGGTTGTCTT
GTCAGACTTAAAGCACGAATTCCTAGTTAATGAAGCACTGAATCAGCATAAGAAAAACTT
GTATATCCCCTTAGAATATAATTAATGGCACTCGATCCGTTGGGTCGAAACAAGGGTATG
AACAAGAGGTGGAATTTCCGACAACATGCAAATCCAGTAAGGGAGTATAGGCGACCCAGT
AGCTAAAGGATAGTTTCTGCTGGGACAAAGAATTGGGTGTGGATCTTGAATATCCCCTTA
GAAACATTGTTGTAAGGAGGTCGAATCCGTTCTAGACACTCGAACAAAGTAGAAAGCCTA
TTCACTTATTTTTCGTTATTAAAAGAGAAATACAATAATAAGCACATCCTTTATTGTTGG
ATTGAACCAATAAAAAACTCAAGCCACATTTTGCATGTTCCACATCAATGTAATGCCGGA
CTAGACTTTGTTATGGAACACACGAAACAATAGCAACCACCAGTAAAAATACTCCCACGA
CAGTGGCCGCCCTGATGCAACTGTGCGATACATGCACCAGCGCAAAGCATGTTGATGCAC
GGCCCTCTGTACAACTTCACTTCCACACATGATCCTGAAGGCGGCTGGGTAAGATCAGTC
TTTGGAGGTGGAGGTGGAGGAGGAGGCAAATCTGTCTTCGGAGGTGGAGGTGCATTGATC
TTTCGATATGGAGGAGGTGGAGGAGGAGCCAAGTGACTGCTCCCTGGATCCGAAGGAGGG
GCCAAGTCACCGCCATCACCTCTTCCCAACTGATCTTCTCCTTTGATTGGGCCTGTTGTT
CAAACCAGAAACGAAATTAACAAGTGAAACACACAAAAAGTTAATAGTCCTTCTCTGGGC
ATCTTGGTACGAATTTACCAACCAATTTGGCGTTAGACATATATTGGGTATATTAATTGT
CTCAAGATGAAGTACATATATGACATAGATGGATGATAATACCTGAAAAGGCGAGCAAAA
CAACGAGAAGAGTAATCAGCATGGTCCTCCTTCTTATAGTCATTTCACAAAGATGTGAAG
ACTGAATAGTGGAGTTCGAGAGAGACCCTACATTTTATAGGTGCTTGGATCGTCTCATTT
TTCAGATCTTCGGGGCACTCTTAATGCATGCTATCTTAAGGTATATCATGAGCATTAAAT
ATATATTTACATACAGCTCCTCTAATAAATTGTATCTTACTATTCTACTCCATTTAATGT
GTTTTGCGAAAGGAAAATAGTACGACTTGTCTTTGTTTTGGTACTTCTAAACTTTGATAT
TTTTCCTATGTTTTTTTGGACTTTTTGCTAATAAATGATCCGCCACCATATGTATGGATT
TTCCTGAATAATGTTTTTCTATCAAATATGTGGATTTTCCATTATAAATAGACTAGTCGT
CAACCCGTGCATTCGCACCGGCTAGATACAAAATTTTATCTTACAATCCATATTATGACA
ATATATTGTTTTTTGATTCTGGTGGG