morexGenes - Barley RNA-seq Database

Contig contig_36909

Source Contig contig_36909

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_36909 (2578 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_36909

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_51383	1	162 bp	MLOC_51383.1	Available	Available	None
MLOC_51384	1	1192 bp	AK359005	Available	Available	None

CDS Structure of MLOC_51383

CDS Structure of MLOC_51384

Contig Sequence (2578 bp)

>contig_36909 2578 assembly3_WGSMorex_rbca.fasta
GGGGGGGGGGGGGGGGGGGCTGAAGATGCTCTAACATGAGAGATGGTGCAAAGGGACACC
GGTACAATATGGTAAATGTTGCAAGGAAAGCCAAAAAAAAATTGGACAATCAGGTGGTCG
TGGCCGACGCAATAGAACGGCCTACAAGGCGGATGATCTTTGTGGGTGCATCCATTCAGT
ATTCAGAAACGAATGGCAGCATTATCTGCTTGCTCTCCGCTAACAATTAAGAATTAAAAG
AGGACCTCACCATGGGTGCTCAAAATCGGTCGAGATTCTACGATGGATGGGGACATGCTA
ACGGAGCATGTTATCACCACCTTATCAGTCGCGGTGTGCTAATAAGAACGCTTGAGACGG
GATGGAAGTCCCATCGAACTCTGCCCGACACTGACACGTTGCTAATGCTTCGCCGATCCA
CGTGACAAAGAAGCAAACGTAACCGGAACCGTAAGAATCGATGATGAGAAAACTAATGAC
CGAGCACGTGCTTGCTTTTACCGGTGCAAGTTGCAATACGCAGAGAGGAAAACAGAGCTG
ACTCGCCTCGGATTCTTCCGCCACTAGCCTCTGGGACACATTATTGGTACTAGCACTGAT
TTTTTTTCTTCTTTTGATTGAATAGCACTGATCGATCTTCGGCTCGGTGTCTCCACCTCA
ACAACCAACCACACTATTTCTTTTGATCTGAAAAAAGAAAAGACATGCCATTCCCTACAT
AGTACTCCATCCGTTTCAAAATATAAGACCTTTTAGGGATTTTACTAGGAGACCACATAT
GGAGCAAAATGAGTGAATNNNNNNNNNNNNNNNNNNNNNNNNNNATCCGTATGTAGTTTA
TAGTACAATTTCTAAAAGGTCTTATATTTAGGAACGGAGGGAGTAGACACGAGAGAGTGA
GAGCCAAACTGCCGAACACCATCACCTTATTATTATCAATCCTCATTTTATCAACAAAAC
GTCTGCATTACAATAGACCGGGCGACGCATAATGGAGAGAGCGCAATCATAAACCCCCAC
CAAATTAAAATGGCCAGGAACGGAGGAGGCACGCCGTGCCATGCCATCGTCGTCCCTACT
CCCTACCACCGTTATTTAGCCACCACCCAGTCCTCCAATCGCTCGTGCTCCCGCGCCTTC
ACATGTTCATGTGCTCGCAATTTGCAAAACCCGGAACCTCACCAACCGCCGCTGAGCCAT
ACATAATTACTCCCTCCGTTCTTAAATATAAGTCTTTTAAGCGATTTCACTAGCTGTCTA
CATACAGAGCATAATGATTGAATGTACACTCTAAAGTANNNNTATATACATCCGTATGTG
GTTCATTAGTGAAATCTTTACAAAGACTTATATTTAGGAACGGAGGGAGTAGTTAGTTGA
AGTTGCCCACAAACCATTGCTTGCTCATTTTATCCTCACACTCCCTGCGCGCTGACAGAC
AGCCCACTCCGGCTAGCCAGCTTAGGTCCTCGGTCCATTCCAGCGCCACCCATCATCACT
GAGCTCGGCAATGGCGGGGGCGCAGCTGCGGCGCGTGGCGGCCGTGGCGCTCCTGGCCTG
CAGCATGGCGCTGGGCCCGCCGGCGGCGACGGCGAAGGGGATGTCGGCGGGGATCGCGCA
CAACATCACGTCCTTCCTCAGCGGCCACCCGGAGTACAAGCAGTACAACAGGTACCTGAC
GGAGACGCGGGTGTGCGACGAGATCAACGCGCGCGCGGGGGTCACGGTGCTGGTCCTCGG
CGACGGCGCCATGTCGGCGCTCGTGTCGGACGCCGGGGCCGACCTGGGCGCCATCAAGAA
CGCGCTGCGCCTCCACTCGCTGCTCGACTACTGGGACGTCAAGAAGCTGAAGGCCCTGCC
CACCGGCGCCGACACGCTCACCGACACCTTCTACCAGGCCTCGGGCGGCGCGGCCACCAG
CGCCACGGGCACGTCAAGATGGCCAAGCTGGAGGGCGGCGGCTTCGGCTTCGCGTCCGCC
GCCAGCACCGGCGACGGCTACGACGCCACCTTCACCAAGGCGCTCAAGCAGACGCAGTAC
GACTTCGCGGTGCTGGAGGTGTCGGCGCCCATCGAGTTCGACGGCCTCTTCGACGGGCCG
TCCGCCGCCAACCTGACCAAGCTGCTGGAGAAGGCCGGCTGCAAGCGCTTCGCGTCCCTC
ATCGCCAGCACCGGCGTGCTCAAGGACTACCAGGCGGCCATGGCGGGGGAGGCCGGGCTC
ACCCTGTTCGCGGCCAAGGACGACGCGTTCATGGCCAAGGGCGCGCCGGACGTGGACGCG
ATGCCCCGCGCCGACCTCGTCGCGCTGCTGCGCTACCACGCGCTGCCGGGGTACAACCCG
AGGCCGTCGCTGAAGCTGGTCAAGGCGTCGGCGCGCCCGTTCCGCACGCTGGCGTCCACC
GCGGGCGGGCGGTTCAACGTGTCGGTCGTGGCCCGCGGCGACGACGTGTCGCTCGACACC
GGCCTCCGCAAGTCCCGGGTGGCGGAGACGGTGCTGGACGACACGCCCGTGTGCGTGCTC
ACGGTGGACCGCCTCCTGATGCCCGTCGAGCTCTTCGCCGGCGCGCCCGCGGAGGCCC