Map Locations of contig_36899 (10380 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_36899

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_51339 1 3440 bp AK373628 Available Available None
MLOC_51340 2 1314 bp MLOC_51340.2 Available Available LOC_Os03g53270.1, FRAME:-3, EVALUE:3e-140, 13103.m05815 protein stem-specific protein TSJT1, putative, expressed





CDS Structure of MLOC_51339






CDS Structure of MLOC_51340






Contig Sequence (10380 bp)

>contig_36899 10380 assembly3_WGSMorex_rbca.fasta
CGCCGTCGGGGTCCGGCGCGGCGGGGTCCATGCGGGCGCCACCGTCCGCCGCGGGGTTTT
GGGGCTGCCCGCCGCGGCGCGGCCTAGGGTTTCGTACGGGGTGGGGGGTGGGGAAAGAGT
GTGAACGGGGAAGAGGGAGAGAGCGGGCGGGGGCTGGAATCGTATAAGTTAAAGCTGAGA
TTTGGACCGAGTTCTGATTTGTTTCTGTCTCGAGGGGTAAAATGGAAGGCGGCCACGCGG
TCGGGTCGCCCCGCGCGCTCTCCGGGAAGACGAAGCCGGTGCGGCTCGGACGGGGTCGCG
GTCAGGCTCGGGGGCGGTCGGACCCGAGCCTGTCCTGTGTGTTCAAGGCCTCAAGGCCCA
CTTCGGAAGAGGCCCAGTCGCCTTCCAAGGTTTTGGTTGTTCCACATCGCTCCAGTCTCC
TCCTCCGGCTCTCGCCGCCGGCCGCCCCTCCCCGGCCCTCCTCTGCTCCGCTCCCCGCCG
ACAGCAGCGCTCCTTCTTCCTCTTGCCTCGGCCCGTTCTTAGGCGATGCCGGAGACGGAG
GAGGAAGGTGCGGGGGCGGCGGTGGCGGAGGCGGAGGCGGAGGAGGAGGCGTACGAGCAG
GAGGACGGGGATGGGGAGGAGTACGACGAGGATGAGGAAGAGGGGTACGAGTTCGGCGAC
GCGGCGGACGCGGCGCAGTGCGTGGAGATGGCGGAGCGGGGGCCCGGCGGCGCCGTGGCC
ACCGTCAGCATCCGGGACTTCGAGGCCCTGGCGGCGCTCTCGCGCAAGCGGAAGGCCCTC
CCCGAGGAGCCGCCGCAGGGGGACGACCCCTCCAAGCGGCGGAAGCAGCCGGGTGAGCTC
TCCGAGGCGGAGTCGGCGAACCTCTTCGACCAGCTGATGGAGGGGTTCGGCCTCCGGCGG
AAGAAGCGGCGGAAGTCCAAGGACGGCAAGAGGAAGGGGCGGGCGAAGGGGCGGAGGAAC
CGGTGCGGCCCCGAGGTCATCAAGAAGCTGGGCGACGCCACCCTGCTCTTCACGGAGAAC
AGGTTCAAGGAGGCCATCCCCATACTGCACGAGATCGTGCGGATCGCGCCCAACCTGCCC
AACTCGTACAACCTGCTCGGCAGCATCTACAAGGAGAACGGCGAGATCGACAAGGCCATC
AACTTCGTGATGCTGGCAGCCTACGTCTCGCCCAAGGACGTGTCCATGTGGAGGAAGCTC
ATCGACCTGGCTCTCAAGAAGGAGGATGCTGCTCTGGCAAGGCACTGTGTTATCAAGGCA
ATGAGGGCAGACCCGGAGGATGTGGGGCTCAAGTTTGATTGCGCCAACATATATCGCACC
CTCGGTGACTGCCACAAGGCCGCGGAGATATACGAGCAGATTGTCGGGATTAATCCTTCC
AACACCGTCGCTCGTAAAGCGGCGGCGCAGATGTACAGAGACTCTGCTCAGGTTGATAAG
GCCATTAGTTTGTTGGAGGAATTTGTCAATGCTCAGACTGCAAACGTCGACTGGGGTCTT
CTCGATTTGCTGATATCCCTTTATCTGAGAAGTGATGCCCATGGTGAAGCTCTGGGGCAG
ATCCAGAAGGCACAGCTGGTGTTGGGATCTGGACAGAAATTGCCCGTACGATTGCAGGCG
AAACAAGTTATCTGCCAAGCTTATCTTGGAGATATGAAACATGCTGAGGTATTCCTTCAG
GGTGTGCATTTGGGGCGCTCAAAAGAGAATGCTGATATGGTTAAGGAGGTGGCTAGCACT
CTTCAAAGTTTGGGGCAGTATGAGTATGCACTAAAATTTTACTCGATGATGGAAGACGTT
GCTGTTCATAATGATGGTAGTTCATATGTGGAAGCTGCTCAATGCTACATGGTAATGGGG
GAGAAAGGAAAAGCTATTCCTTGCCTCTATAAAGCTTTAGAAGGCATGGAGGACAATGTT
GATGTACGGATAACCTTATCTTCCCTTCTTGTTGACGAGGATAAGAGCAATGAAGCTATC
AAACTGCTTTCTCCCCCTGAAAATCCAGAGTTGCAGTCCGCTGATATCCCAGACCATCAG
AAACCTTGGTGGCTTGATGGGGAAGTAAAGATGCAGCTTGCCAAACTTTACTACAACAAA
GGCATAATGAAGGAATTTGTGGAAACCATTTTTCTTCCCATTCTTGAGACACTGGATATT
GAGTATGCTAATCGAAGGGTCAAGGTGCATAGGAAGCTTACAAATGATGTTCTGCAGGAA
AGAACTAAAGTGCTGGGTGAAGCACGTCAAGACAGTGTATTTCAAGGATGCAGGCCTATA
GCATCAACTGCAGAGTTAGTGAAGGCAAACAGAGCAAAGAGATTGCTAGAGAAAAGGGCA
GCGTCAAATGATGATATGATGAAAGATGATACACGGAGAGCAAAGCAGGCACCTCCTCTT
CCTGGTCTGCTGACAAATGTGGACAACCATCAGCTTGTGTTAGATCTCTGCCGAACATTG
ACTTTGCTCCAGCGATACTTTGAGGCGCTGCAAATTATCAATCATGCTCTTAAACTTGGA
AATGAGCCCCTCTCTGATGACATCAAGGAGGAACTGCGGTCCTTGGGCGCTGAAATAGCA
TACAGAGCTCCAGATCCCAGTCCTGGTTTTGATTATGTCCGTTATGTAGTTCACAAGCAC
CCGCAATCCATCTCTGCGTGGAACTCCTACTACAAGGTGACATCAAGAACAGAAGAGAAA
GGTCATTTTAAGTTTCTTCTTCGGGCAAGAAGGGACCCCAAGTGTGTGCCTCCTAAAATC
ATATCTGGGCATCGGTTTACTGCTATCAGTCAACACCAGTCCGCTGTTCGGGATTACCTG
GAAGCGTACAGGCTGGACCCGGAGAATCCTCTAATCAATCTATGTGTTGGTTCGTCCTTG
ATCAACCTCTCCCTGGGCTTCAGGCTTCAGAACAAGAACCAGTGCATCGTCCAGGCGTTT
GCGTTCCTCTACAAGTGCCTGCGCATCGGCAGCAACAGGCAGGAGGCCCTGTACAACATT
GCCCGGGCTTATCACCATGTCGGCCTCAAAACCCTGGCGGCCATCTACTACGAGAAGGTT
TTAGCCATGGAAGTGGAAGATCACCCCATACCCAAGCTTCCATTCGAGGAGAATTTAGAG
GAGCAGCAGGATCTCAGGCCTGGCTATTGCGACCTCCGGAGAGAGGCTGCATTCAATCTG
CACCTGATCTACAAGGAAAGCGGGGCAACTGATCTGGCGAGGAGGATACTCAAGACATAC
TGTTCTTTCTAGGAATTGGTCGTTTATTTACGCAAGTACTTGGCCTAGTCTATGTGGATG
CTGCTATGCAACATTGCCATATAATCGTAAAGGCAAGCGATTTTTCATAGTGGAGTCCAA
ATGAGATTCCAGACGTTGAATTGTTTCTCCTCCCAGGTTTTGTCATACTGGTTTCGGAAT
GAAAATATACCTATTTCTTCCAATTTGATCATGAAGCAAAATGGATGGAAATCATTTGCT
TTACAGCATAAAGTACATGAAAAAGCTGTTTAAAACCACCATATAAAACATTAGATGCAA
GCTAGTAATAACAAAAGACAAAACATAATTAGTAGTACCAAACTAAGCCTTCACTGAACT
TTATTTATTGAAACATATAGGGGGCAGATAAACTCTACCACCATGTGGTAGCATCAGAGT
TTCTTCGAGCATCAATGAACTTATGGCAGTATCATTACCCATCAGACAGTACATTTATTG
AAACAGCATTGTGTAGAGCGTCGTAAACTGCTCAAAAATAGAACGCAGGTGCGGTGTCTC
AGTGATTCATTGTCAAGATTGGCAGTTTACAACAAGGGTCATCGAGCTAGTAGTGGTTAG
ACCAATCAGCGGCACTACCGACGCGAGGGATCCCCGAGTCCTTCTTGGCCTCGCTGTCGA
CCTTGAAGGTGGAGCCACACATCTGGCCTTGGCTGTCCACGCGTGGCACGGCCTTCAGTT
CGTTCAGCGGGTGCTCGAAGCTCTGCAGCCCTCCAGATGTGGTGTAGAAGCAGCCTGACG
ATCATCCAAATGTGGTGTCAAGGTGGTGAGTACCTCAGCTGAATTATACGGATACAAACA
AAGATGAGATGGGCAAGCTGTGGCAATGCTGTTCTTTGTAGTGTACCTTTGGGGAATGGG
GCGAATGAGTTTCCGCACCCTGCCTTGAGAAGCTCATTGTCGTCAGAGAACACAAGGTGG
TCTTCGGAGTCGACGCCCCAGAAGAAGGGGATACTGCCATCAGCATCCTGTTCAAGAATA
GCGGTTGCAACTCAAAACCATATTCAACTACAGGTTAAATGTTTACATCCTTCCAGAAGA
GAGATGATCTACTCACAGCAGCGACGAATGTGGATTTCGACACCGTGTCGTACAGGATGA
AAGCAAACCGTCCACTGAGATCTCTCACGACCTGGCTGGCTGGGAGAGGGCCCCTGTCCC
GGAGGGTTCTGTAGGCCTCAATCAGGATGGTAACCTCATTTGCTGTCTTGCTCAGACCGT
AGTGTTGCTTCAGGTTGCCAATGTTCTCAACATGTCCTTGGAACAGGCAAAATATGTCAT
TCACAGAACCAAACATCCTGGATACGAAGACAAAGACAACAAAAAAAACAGAGTCAGGTT
AATATAATTCAAGTAACCGGATAGGAAAATAATTCTCAGGAACAATAATCAGGTAGAAAA
GAAATTCTATGTTACTCCTATTTGTTGAAATTACCACATGCCTAAGAAACTATCATGTGA
AATATTTTCTACAAACGCAACAAAAGGATGTTACTGGAGTCACATCAATGTTCATTATGT
TATTCAACTTGGCAGCCCAATAATGCCAATAATGCTATCAGCAAGCATTGATATTCAAGT
AAAGGTTGCTTCCTATATCAAAAGAAAATTTGATCTTCGCTTTGAGTGAGTTTAATAAGG
CTCAACTCCCAAGTGGTATACGCATTTTACTTTTATTTTGAAAGGTGTGGTATACGCATT
CGGTTGCACATGACATGGTTACTGCCATATAAAAAATAGCACCAGTCACCACCATCCGGT
GGGCTGGCTGACAAAAGAACAGTTGATTAACATATAAAATTGACACGTATCCAGCCATGT
GGACGATGGTACGATGGGCATGTGCAGTGTATCAGAAACTTCAATATTACTTCCCCTTTT
CCTGACGAATCTCTAGACAAGGATGCAGAACATAGTCTAGGAAAAATAATGGCACCCCCC
AGATTTGAACTAAAACCTTTGACACTTATTTTGGATCCGAGGGAGTTCTACATCATATCT
ACACAAAAGGGTTCAGACAAGATTCAACAAATATCCTCACATCGCAAGAATTGTTGAATC
TCTTCACGCTGGGTCATAATCATCGGTGTTGGATCACATTGTTGGACCCAGAAGAACGGC
AGAAATCAAGACAAAAATCAGTCTCAGCAGCTCCAGTGGTAAGCTGGATCTTGGCTGTTT
AAAGCGCATAACATTCAGAAATAGTTGCAGCCTTGGGCTAGAGCTAAGCGGCCAAATCAA
AATTCCAGTACATAATGCGACGAGAATGATGGATTCGGCCAAATTGTTTCTCTGGGTTCC
ACTAAGCCCAGCTAAGAAGAGGTTCCCCAATCTACGAGCCTACTAAAACGATCAGATAAA
TAACTACATCCTGTATCCATCAGCCGGAGGAAACTAACCCAGTTAAGCCGCTCCTAATTT
GGACAGGATCTGAACATGCGCACTAACAATGATTAGATTAGCAGCCCATCATAATGGTGG
CTGTCACATAACTTCTGTTGCAGATCTGAAGAGTCTGGCCTAGCATTTACGCTGCGGAGT
CCCCCAATCGTAGATTAGAAATTAAGGCATAAGACGAGATTAGGCGCGAGGCCGACACCA
AACCGCCGAGCATACATCCATGATCCATGCCTGCTGCTTAATCAGCAAGAGAGGAAATAA
ACAAACACTCTTCATAAACAAAACCCAAGTAGTCCGTTTCCCCAGGATCGCCGGAAAGCT
CCAAAACCAGCACGCCACTGAAAACTAGTGTACATCTCTGGCTGGCTGGCTGGCTAGCCC
GGAAAAACCAAACAGAAACGGAGATCTCCGCAGGCTCCCAACGGAGACCTCCAAATCCCC
GGCGAAGCGACCGCATCACCGACCGGATCAAACACGGCGCAGTCTTCGCATCACCCGACA
CCGACAGCACTAGAAGCATCGGCAGGCCTACTCGCGGTATTCAGCAAGACCGTGGACGGT
GGATACCTGGGGACGAGCGGGTTCTTGTTGGCCGAGGAGTAGGCGAGGGCGCCGGCGGAG
CCGAGGCTGACGGTGACCGCGGCGTCGTTGGCGTCGGCGAAGCCCTTCATCAGCGCGGCC
GCGCCGCCGCCTCCCACCGCCCCTCCGGCCGCCGGCGGGCTGCGGAGGCCCTCCGGGCAC
TTGGCCACCGTCTGGTCGAACACGGCCAGCATCTCGGCGCTGCGGTCACCTCTCCGATCT
CCCTCCTCTCCCCTCCCCTCTCTTTCCGTGCGCTGTGGGCTGTGGCTGTGCTGTCCCCGT
CTCCTTTGTCTGCGTGCTGCGGCGTGATCTCACGGCGACGCTCGGCTCAATGGCCACCCC
AAGTCAACAGATATAGGCAGCTCGGTTTCCCGTTCTGCCCCTTGGTCGGTTGGTGGGAAA
TTCCCGGGGCCTTTCCTGTGGCCGCCAATGGTTTTCTGCATCCTCTTTCACGTACGTGGG
GTGTAATAAACCACTGAAAATGCAGGGGAAATCGCAGAAATTCCGAGCAATTCTGCAGCA
AAAAGTTGTACATTTATCTGTAGGTTATCTTGTTGTGTTCCGGGGTAGTTTGGTAACTTG
TGTAAATAGTAAGTAACCGATCTGGTCCCTGTGGTCTTATCCGTTTTTTTTCTGGTTGAT
TGATTGAAATCTTATCCAGTTTCGCACTCGTTATCGACGTGGAAAGCTTAGGCCTTGTTC
GGTTAATCCCCACCACAAGTGGATTGAAGAGGATTTGAGGGGATTGAGGTGGATTTTGAC
TTACAGGGAATTTAATCCTTCCCAATCCACTCCAATCCCCTTCAAATCAGTTGCAACCGA
ACAAGGCCTTAGGAGGGTCTGCCGGGTTTCCTGGGGATCGGGTTAGATTAAGCGCGTCCA
GCTAATCTATCTCTGGTGCCAAGAAGTAGAGTAGAGGAGAGGAGAGGAGAGGAGAGCCAT
TGTTTTCCAAAGCTCGCATGGGTCGACGCCCACGTTTCCAAATGTGTAGTCGTGGAAAAC
ATCATCTCCGATCGTGCTTCCTCCCTTTCAAAAAAAGAAACTATCGCTGGTCCCGTCCTA
CTGAACTACTTCATCCGTTCCTAAATATAAGTCTTTGTAGACATTTCATTAGTGGACTAC
ATACGGATNNNNNNNNNNNNNNNNTAGAGTGTACATTCAATCATTTTGCTACGTATGTAG
ACACATAGTGAAATCGTTTAAAAGACTTATATTTAGGAACGGATGGAGTACCATTTTAAG
AAAATGATCGAAAACTATCAATTTTTAAATTTTTGTGATTAAAACTATCAGGTCATGTTG
ATGACTGTTTTAGTCATTTTAAACACTTTTCTGACAGGTATTGCCCACATGGCAGGTATA
TGACTACAGTAATGGCACGTAGACGATTTCACTGTGTTGACCCTTTTTACCTAGTTTAGC
CTGATCTGACCCATTTTACGAAAAAATCGGATCTAACTCTTTTTCCTATCGCCACTCGCT
TTGGCGGTAGGCATACACATCCTACCGCCAGAGACATTGGCGGTAGGGTCGTTTGACTCA
GCTACCCAAGGAATCCGCATTGACCCGACCCCTACCGCCACCTCCTGTGGCGGTACGGAG
TGTGTGCTTATCGCCACAGCTGAGGGCGGTAGGAAAAAGGGTTGGATCCGGAAAAAAATG
ATAAACGGGATCAGATCGGGCTAAAGTTAGCAAAACGGGTCAAAACCGTGAATTTGTCCA
CGGCACGCGCCTACCGGCCGTTTAAGCCGCCGCTCGGTCGGAACGAGCCAACCCAGGTCA
AAACAACCGACCAGCTCGCCCTTCCCGGTATCACTCACTCTTCCTCGCTCACTTTTTGCT
TCACTTATGTCCTCTTTCTCTCCTCGCACTCCGGCGAAGGAAAACTCGGCGCGAGCATGC
CATCGTGGCCCAACATCAACGAGAGATCTGACGATGGCGAGTACATGAGTGAGTTCGGCA
GCATTGTCAACAGTATTCAAAATAGGAACGATCTAGGGTTGTATTGCTCGAACTAGGGAA
CGAATTCATGAGATCTAGCATATTAGAGGCATCCTCCCTTCCTCCCTCTCCTCTGTTCCG
TATCACGAGTTACAAGATGGCCAAATGGTCATTCCTTCATCCCAAAGTCCATTGCTATAG
GCAGCGAGTGTAAATAAAAGGAAACATGTGCAAGGCTTCATTGAGCCCATTCACTACTTG
GAAGTTGGGTTGGTGCCTTTTGTTCTCGTCTGGTCCGGGTCACTGGCCCACTGGTTGAGT
TGGTGTTCCCACCATTGACAATCCCCCCATCTTGAGAACCGGCTTGACCCCAAGCCGCTG
ATCAATGAAACTGTTGTTGAAGTGAATCAATATCCTCCCAAGTCATCGCGGAAGCATCAG
TGCCACTCCATTGGATGAGCATTTGAGGAATTGTCCTATGGCCACAATGACGAACACATT
GCAGCAAGATTTTAACAAGAACCTGCAAAAGAGCGTCAATAGGAGGAAGTGTTAGTTTTA
CCTCATGAGGAGGCAGAACACATTGCCTCAATTGAGATACATGGAATATTGGGTGAATTC
AACTTGTTGCTGGCAAATCCAAACAATAGGCAAGTTCCCTCAACTTCTCAGTAATCTCAT
AAGGGCTACAATATCTGAAAGATAGCTTCTAGTTGGCCATTCTGATAATAGAAGACTGCA
CATAAGGTTGCAGTTTAAGCAACACCTTATCACCCATAGCAAAATGGTGCTTAGTCATGT
GTTTATCAACATGAACCTTCATACGATGATGTGCACGCATCAAATGTTATTTTAATGAGT
CCAGCACAACATCTCTACTATCAAGCCACTCCACAATATTTTGAGGCAGAACAATATCAG
TTGCAGAGATTCCAAAATGCCAGGAGCATATCCATAGAGTATTTCAAAAGGACTGTGTGG
CCCGGAGAGGAGTGCTAGTTGGTATTGTATCAGAACTCACACAAAGGAAGTCATTTAGAC
CACTTATGGGGATGTGCACTAATAAAACATATGAGATGACACTCCACTTGTTGATTAACA
CTCTCTATTTGACCGCATGTTTGACGATGGTTAGATGTGCTCATCTTAAGCTTGCCGCCA
ATAGCCTTCATCACTGATTTCCAGAATATACAAGTGAAGATAGGATCCATGTCTGAGATA
TTAAACTTGGGCAGGCTATGAAGCGTGTAAACATTATCCACAAAAACTTTTGCTACACTT
CGGGTGAAGGATGTTGCACATGAATGAAGTGGCCATATTTAGTGAACTTATCAATAACTA
CCAAGATATAATTATATCTGTCAAAGGTGGGCAATCAACTGATAAAATTAATAGAAACCA
TTTCCCAAGCTTGCCTTGGAACAGGTAAAGGACAAAGCAATCCAGGATATGGTACCTTCT
CATGTTTGGCATGTTGGCAAATGATGCAAGATTAGCATAATCTCTAATAAGTTTGCACAT
GCCCACCTAGTAAAATAATGCATGGATTCTCTTGTAAGCCACAGGAAAAGTAGAGTGACC
ACCCACAAGACTATCATGAAATGTTGTTTCAATTTGTGTATGTAAAGGAGCAGAACTACC
AATCCAAATTATGTTCTTGTACTTAATCAGGCCATTGGACAATGTAAAGTGAGTGTGGGA
CTTGGGAAAAGTACTTAGTTGTTGCAGTAATTCTTGTGCTCTTTCTGTTAGGGCAAATTT
CTCCCTAAGTGGTTTTGGTGATTGATGACAATGCGTGTGCGGACTAATCATGTGTAGTGA
GCATTTCAGATAATTCATGACTAGGCATAAGACGATTCGGTGCCCCTCGGAGTCTTTCAA
AGATGGTTGCTTTCTANNNNNNNNNNNNNGTGGATTTGAGTCGTACGAAAGCCGTACTAT
TAAGAGTGGGTCCGCTTCGGAAAAGTTTGGGTGGAAACAACACGTACACATTTCTATTGC
ACCACCTTTCCCTTGCTTAAAATGGAGCTCCAACCATATTTTTCCTTGTATGTGCAAAAG
GGCCAGCGGTAGTACCGAACTCGGGGCGGTAGTAGTTTTTTACTACTGCACTATGGGCGG
TAGTAGTTTTTTACTACCACTCCGTCGGACTTTTTGCGCATCCTTTTGCCTCAACAGTGG