Contig Data
morexGenes
Links



Map Locations of contig_36893 (6170 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_36893

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_51317 1 387 bp MLOC_51317.1 Available Available None
MLOC_51316 6 1211 bp MLOC_51316.3 Available Available None
MLOC_51318 1 811 bp None Available Available None





CDS Structure of MLOC_51317






CDS Structure of MLOC_51316






CDS Structure of MLOC_51318






Contig Sequence (6170 bp)

>contig_36893 6170 assembly3_WGSMorex_rbca.fasta
GCTACTATTGACATATCTTGTGTTTAGTGTGATTTGCTAATCTGTGTCATACACTCACAT
ATCTTATGATATTGCTCAAGTAAGTTTGTGTANNNNNNNNNNNNNNNNNNNNNNNNNNNN
TGTGTTCATCTTAGCAGAACAAGTTGCTTGTGCACGTAGTTGAGTCTAGTACATTTAGGA
TCTGTGCTTCAAAAGTATCCTCTTAGTTTATTTCTGCATTAGGATAAAGCCAAATTCGTA
GAAGTTTTTAAAACGCCTATTNNNNNNNNNCTAGGCGACATCGTGGTCCTTTCAGGCGAA
AAAATGACCAGGGGGGCTGTTCGGCCCCCGAGGGGACTGAAATAGTGTCGCCTGGTAGTG
CGCCGATGGAAAAAATGGCGTGGGGGGGCTCGGGTTCCGAGCCGCCCCGAAGGGCACCCC
CAGCCGCCGCTTTTGGCCCACTTTCGGAGCAAATTGCCCATTTTTGGCCCATATTCGACA
TGCTCTCGCACAAATTTAACAACAATAGTTATTTTTTATCACATAGTTCATCACAGAAAT
CAATACAGATCAAAAAATAGTTTAACAAGTCAATACAAATCAAAAATCAAGCTAGGCGTT
GCCCTTAAGCCTCCATATGCGCTCCACCAAATCGTGCTGCGGTTTTTGATGCACTTGTGG
GTCTCGAATCTCCTGATGCATGTTGAGGAAGGCAGTCCAGGTTGCCGGTAGTTGGTGATC
AACTTGGGCAAGAGGACCCTACGTGTAATATGACACTGGCTCTTCCTGCTCGCTCTCAAT
NNNCATGTTGTGCAAGATGACACAACAAGTCATGGCGTCCCACATTTGATCTTTTGACCA
GGTCTGAGTGGGGTACCGTACAACAGCAAATCGAGATTGGAGCACACAAAATGCCCATTC
GACATCCTTCCTGCAAGCTTCTTGATGATTGGCAAAGTAGGAGTTCTTGCCTCCTGGCGC
ACGATTTGAGATAGTCTTCATAAATGTGGACCATCTCGGATAGCTGCCATCTACTAGGTA
GTACCCCTTGTTGTAGTGGTGTCCATTGACCTCATAGCTAACCACAGGAGCATGACTTTC
AACAAGCTTGACAAAGACATTCGAACATTGCACTACGTTGATGTCATTGTGAGTTCCTGG
CATACCAAAGAAGGAATGCCAAATCAAGAGGTCATGTGTGGCCACTGCCTCAAGTACCAC
ACCGCAACCTCCTTTGGCGCCTTTGTACATCCCTTGCCAAGCAAATGGACAGTTTTTCCA
TTTCCAATGCATGTAGTCGATACTTCCAAGCATCCCAGGAAATCCTCTTCCTACATTCAG
TGCTAGGCCCCGAGCAGTGTCGTCACCATTTGGTGATTGCAAATATTGAGATCCAAAAAC
TACCACCATTGCCTTGCACAACTTGTAGAAACACTCAATGGTGGTGGACTCGGCCATGCG
TCCATAGTCTTCCAAAATATCATCGGGAGCTCCGTACGCAAGCACCCTCATAGCTATCAT
GCACTTATGAAGAGAGGTGAATCCAAGTGTGTCGGTGCAATCTTTTTTGCACTTCAAGTA
GCTGTCGAACTCCCCGATGGAATTCATAATCCTCAGGAAGAGCTTCCAGCTCATACAATA
ACGGCGCCGGAATACTTTATCGCCGTGCAAAGAAGCATCGGCGAAATAGCCTTCTAGTCG
ATGCCTCTGCTTTGCCTTCAGCCGGCCCGGCGCCGAGCCACCTCGCCACACCTTTGCATT
GCTTGCGAACAGGCCGACGAGAGCGGCGAGGACCATAAGGTGCTCTTCATCCTAGACGTC
GGCATCGGCTTCCTCCTCCAGTAGCGTCGGGAACGCCTCCATTTCGTCGGAGTCGATTGC
CCACGCAAATCGCCGAACACCTGGCGGGCGTGGCGGACGCGGAGTCGCGTACGTGCCCGG
AGCGTCGGGAAAACTCGCCAAAAGCAAGGGGGGGCGAAGCCGCAGATAACCCTACATTCG
TCGATGGGGTAATGGCCTTTGTAGCTGTGGTAGGTAGGTGGGCGACGCCGGAATCGGCAG
ATTCGGAAAAGAAAAGGCCTTTTTCGCTTGATAGGAGGGCCAACACCTCGTTCTTCCTTC
CGCCGGCGTCCCCGGGCGCCAGCCAGCGCGCTGGGTTCGGGTTGGGATCGGCGGAGCTAA
TTTCGATCTTAATCGACGAAAAATCGGCTTCTAAAAACGCGACTGGATCGTTTTTTTTCT
CACCGGCAAAAAAAATGATCTGAAAAGGGTTTGTTGGGGACGTGGTTGAAGATGTTCTAA
GTCCTCTACTCCCACGCACATGTTCAAAACGGCTGGAGAGAGCCTACCACTGTGCCAGGA
CCTAGTTTGCGAACAATTCAAGCTCAGTACTAATATATTCCCACCTTAGAAAATTTTGAA
TTCAAATTACGTCTAAAAAATCAAGCAGTTTTTCTTTGGAATTTTACGGTAACCGCGGTA
ACCGCGGTATCCGCGGTTCTCGCCCACCCTCTGTATTTTTTTGGATTCGATAGGCAAAAC
GTTTTTTTTTTTTTTTGTGAAACGATAGCCAAAACGTTGGTTGGGATACGGCCGGGTTAG
ATCGGGCCCTTCCATTCAGATAAGTCTAGCCCATATGCTCTGACAGGGAAAAGATGACTC
TAGTTTCGCCCTAGAAATGTCCAGATGTTTCGCCTATCCTCCATAACCCAGATCAAGGGC
ACGCCATCATCACACGACTCTCCTGCGCAACGAAATCGAGGTATGCCTTCCCGATCCCTC
ACGATTCACATCCGTTCTGTCGTAGTCATAGGTCCGCGCCATTGCTGCATCCCACCTGCA
TCTCTCTCGCGGGGGATGATTTTGTTCCCTCGGATCTCTCTTGTTTGTGTTCTTGGTCGA
TTGTTCATTTGAGAGGCAACCCATATGCATATATGTGTTCGTGGAAATGAGGCTCCAGAA
ATTTGTGAAGGAAGGTGTGATCAGATTTTTAGGTAGGGGTGTGCTAATTCATGGTTTCAT
TGACGCTTCCAATATCCATGGCATGATTTTGCTGCTCGACGCCAACAAAATTTTGCCCGT
TTCTTGCTGTTCTCTGAATTTATGTGCAAGGTCAATTGTACTTTATGCATGACCCTTTCT
GTATGATTGACCGTATGTATTTCTAGCTAGCTCAAGGAACTATCCTGGTACATGCTTATT
CCCATGGATCTGTTCTTTGAGTAGAGATTGCAGGCAGCGAGCACACGAATTCCATGAGGG
GGAGTGCGAGGTCTCTAGTGGAAACTGCAACCAGACAAATCAAACCTGGCAATGGATTTG
CGAGTATGTCAAGATCCACCCTCAATTTGCTTTGCTTGAGATTGAGAGTTCCAAGAGATC
CACCCTCAATTTGCGAGTATGTCTCACTTCTTGGTGTTCTGTTGCACAGGGTTGATGACG
ATTACAACTCCCCAGAAGCATGAGAAGGGGATCAACCCTACTCAATCCGCCCTCCCAAAG
GATGAAAACGTCGAGCCCCTCGTCGCTTTCAGCCGGCCGCCTCCTTTGCCACCGGTTCTA
GGCCCTTTGATCGCGCTCTCGCTTTTTCAGACTTCGTCTACTGATGAAGACAAGAAATGA
GTCACCAGGTACGCGTACACGTTGCGTATGTTCTTCTGATCTTCTCTGTTTTAGTGTTTT
AGCGCAGTAATGTTGTAGTGACATAAAATTCAAAGTTCTGTGCAGGGGAGTTGCTTGTAT
GATCGCTGAGTTGGTTACTTTTCGGAGCCTGGCCGTGTATATACTCGGAAGTTGTACACA
TCATGTCACTAGTAGTCTGGCAAGTACTCCTACTACGGAATCTGAACAATAGTAGTCTTA
TGTGTCGACTTTTCGGACTGAAAAAATTTCGAAGTCTGTCGGTGTGCTAGTATTTATCTT
GTCAATTACTCCCTCCGGTCCTTTTTACTCCGCATATTAGATTTAGGTCAAGTCAAACTT
TACAAAGTTTGATCAAATATATATTGAAAAATATCAACATCTACAATACCAAATATACAT
ATCATGAAACTACCTTTCGCAATGAATCTAACAATATTAATTTGATATCGTGAATGTTGA
TACATGTTCCTATAAATTTGATTAAAGTAGAGATACTTTGACTTCGGACAAAGCTAATAT
GCAAACTAAAAAGGACCTGAGGTAGTACCTTGTGCGTTTTCGATTTCTACGGGCTCGTTT
AAAAGTGGCAGCAAACGTGGTACAATAGCTACAACAACGCAGCTAAGGATAAGGGATGTA
TTAAAAAACTAAAAACAGTAAGTACCACTTAGAAGATGTCATCAAGGCCCTTCTAACGCG
GATCTCGGGAGATCAGGCGCTGGGACCTATTCCCAGCCGTGAACGCAACTTAGCCGAACT
TGAAATAATTAAAACGCCCAAACTCAACGAAATTTACTCTATTTTGGGCAAAATATAGAG
GTTTTATTCATATTTATATAAATTTTTGAAACATACATAAAAAACCTTAAAAAAAACTAC
GTCGCCGTCCGAGCCTAGTTCATGTCGAGGAAGTTGTAGAAGACGGGGTAGTCGTTCCCG
TCGACGTTGCTCGGTGGCTCGTCCTTCACGCCGCCGTCCTCGTTGTAGCCTTGCCCTGGA
CCGCCGCTACAGACGGGCTAGATCAGCTCGGTCGCCTCCTCATCGCTGTCGAAGAGGACG
ATGATGCCGTCCTCGTCGCGGCTACGGCGTCGCTCGACGATTTCCTCCACAGCACAACGT
TGGCGCTCCATCTTCTCCATAACATGGTCCTTTGTGACAGATCCTTTGTGAAACCCTAAT
CTGACGGTACCATCAAGTTTCACATCGGTGCCACCGAAAGCATGTGATCAATTTTCTGTT
GAGCAGATTTCAAGAATCGAAATTTTGGAGTTTGAAATCGATCTTAACGAGATTTGGAAA
TTGTCCTAGGTCATCGTATGGTACCACCGAGATTCATATATCGGTCTCACCAAAAATTTA
AAAGTTGCCACGTTCAGTTCAACTCGGTACCACCGAGATTCATTTCGGTGTCACCGAATT
GGGCAATAATGTTGTAACGGTTGAATTTTGGGGATACCTATATACACCCCTCCACCCCCT
CATTCGCAGAGGAAGCACTCCGAACAGTTTGAAGTGAAAACAAAACAATAACTAAAAAAA
TTGACTGAGGAACTATCTAATACAACTATTACTTTCGAGGACAAGAAGGATGCTCTATAT
CTTTTTCCAATCCTGGCAAAGGGCACACACACTTGCCAGATTCATTTTTCTCAGAGACAG
CCATCTATTCATGTGTTGAGATCAAGAGATTCCAATCCAATCATTTAAAATTTATATCTA
GCATCCCCAAGTTACTTTCCACAAAATCAATCTCTCCTACACATGTCAAATATGTAAGAA
AGTGATTAAGTGTTGAGGAGACTATCTTTTGAAACACAAGAGCAAAGAGTTCATCGTTCT
ATCGCATCTATTATCTTTTGGAGGGTGGTACCTCCTAGACTAGTTAGATGTCTTTTCGGA
GCCTCCTACTTTGTGTTGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTCTACCGTGAGTGAGGCTAGTCGTGTTGGACGTAAGCCATGGTGGAAT
AGACAAGGCCGTTTCTTCATGGACCCTTTATGGATGGAGCCCTGTGTGGACTCTCACAGG
TGTTACCCTCCGTGGGTTGAAGTCTCCAGTAACGTGGACGTACGATAGCCCCACCTATCG
ACGCCAAAAATCACCGTGTCAACCTTTGTGTTTGATCTTCCTTCCATGTCCTCTACATTA
CATTTGCATGTCTTTACTCTTCGATGTAATACTCTTAGATATGCATGTGTAGGGTAAACC
TAACTTGTCATAATTGCTAAAACTGACCCACAACTAAAACTGGGAAAAGATGAAGTTTTT
ATTTGGTCAAGTTGTCTAATCACCCACCCTCTAGACATACTTCAGATCCTACAAGTGGTA
TCGACGCTTTGATCTCCATTGAATTGGTTTCAAAACCAAGGAGAGTATGACGTCTAGTGA
GGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGCTAGTTGGAAGCA
TAAGATGATGCATATTCTTGGTCCTAATCCTGTCGTTTGGGTTGTTGTTT