morexGenes - Barley RNA-seq Database

Contig contig_368881
Source Contig contig_368881
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_368881 (6146 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_368881

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_51296	6	2435 bp	MLOC_51296.3	Available	Available	LOC_Os07g03070.1, FRAME:+3, EVALUE:2e-85, 13107.m00242 protein tetratricopeptide repeat containing protein, putative, expressed
CDS Structure of MLOC_51296

Contig Sequence (6146 bp)

>contig_368881 6146 assembly3_WGSMorex_rbca.fasta
CGCTGGCCCCTTGAAAAAAACGAGTCCGCCCTGGTGTACCCGACCCATCCCACCGTCCCC
CCCCCGCCCCCGCCCCCACCCCCAGCCACCGGCCCCCATGGCAGCCCCGCCGCCGCCGCC
GCCGCCGGCGGCGCTCCCGGGCGACGTCGTCGAAGAGATCCTCCTCCTCCTCCCGTCGGA
CGACCCAGGCTCCCTCCTCCGCGCCTCCCTCGTCTGCAAGGCCTGGAGGAGCGTCGCCAC
CCATCCCCACTTCCGCCGCCGCTTCATCGGGCTCCACCGCCACCGGGCACCCCCGGTGCT
CGGCTTCCTCCACGACTGCAAAAAAGAGCGCATCCCAGACTTCGTCCCCACCACCAACTC
GCCCTTCTCCCTCTCCGCTCCAGACCGCCGGCTCTGGCGCCCCCTCGACTGCCGCCACGG
CCGCGCCCTCTTCCTGTCCAAGGGTGATACACAGGAACTCCTCCTGTGGGAGCCAATCAC
GGGTGCCCAGCAGAGCATACCGCTGCCCTCGGTGTTCAGGTCCCAGTGGCCGACCGCGGC
CGTGTTCTGCGCAGCCGACGGGTGCGACCACCTCGACTGTGCGGGAGGTCCCTTCGGCGT
GGTCTTCGTCTTCGTCCTCGTCATCTCTTGCGACTCAGACGCTGTCACATCGGCGTGCCT
GTACTCGTCGGAGACTGGCACGTGGGGCAAGCTGAGCACGAGGCAAGACGAGTTCGCCAT
GGAATTTGAGTACCATTCCAGCGTGTTGGTTGGGAGATCTCTGCTCTACTTCTTGTCCGA
CGGTGATATGACCCTGGAGTACAATTTGGACACTGGTGAACTGGCTGTGTTTGACCCACC
ACCTGACGATTACGGCAGTGACGGCCGGAGATTTAGCATCCTGCTGGCGGAGGACGGTGG
GCTGGGGATTGCGGAAGTCATTGATCAGGAGCTCATATTGTGGAAATGGGAGGCGAATGA
CGACACTGATGCACCATGGGTGCTGGACCGGATCGTCTACCTGAACAGTTGCGGTCCAGG
CAAACTTTATCCAGCGTTGGGCTTTGCAGAGGGAGCGAATGCTATTTTCGTGATAACTGG
TGCCAGTCTCTTCATGATCGAGCTGCAGTCGGAGCAGGTGAAAAGGGTGTGTCGTAATCA
TGGCTTCTGTAATTTGATTCCAGTTGTCAACTTCTACACTCCACATTCTAGACTCCAAAT
GCCAGTGGGTGAAGACCACGGCCCAGCGCCGCGGCTGAACCTACTGAGGAGGGGTGGTCA
GCAAGTGGTTTGGGAGGAGAAATCACTAGAATGGGCGCAGGTGATGTTTCATAAGGGGTG
CAAGGCTATCAATGAGAAGGACTTTGCCGTCGCGGCTAACTGCTTCAGGCATGCTCTTGA
GATCAGGTTTGGGTTCTACTCCCAAACTCCACTTGTTCTCCTGCAGCTAGTCCTGACGTA
GATGGGCCTGACATATTTTATTGCGATGTATGTATTCCAATGAGCATCAAATAAAGTCCA
AGTGCTTGAGGGATAGGTATTATCCTATTTGATCGCTGTGCAGTTCATTTATATGGTTCC
TCAGAATTGTACTTCATAATCTGTGCAAGCACTAGTAACTAGTATAAAAGACAGTCGACA
AAACATAGTTAGCGCCTTGTGTCATTACAGTGGTTGTTTTGTTCTACCTCAGATTACATG
TTTATGTTATAACATTAATCATGATGCATCGGCGAATTTACGCATTATTCTTCTCATGTA
GGGTTCGGCATTATGGAGGACTTGCTCCGGAGTGTGCTAGCACATTTTACAGTTATGGAC
ATGCCTTGTTTTTCAAAGATCGGGAAGCGACCAATCCTTCAGGTAATGTTTCAAATCATG
CACCAAATCAAGAATCAATCACACCTACAGCCAGCAAAGATGATGCTGGGAGCTTGGTGG
CCTCTGGTAGCAGTTTTGAGCATGCTCCACCTTCAAGGAAAGGTGATTACTAGGCATGCA
AGCCGACGCGTTTGCAACGTCCGCGAAGCCGAAACTAAGCTAATCACTTCTACTTTAATA
TCCGTGCTAATGCAAAATTGATCAACGCGGACGCGTCCGCCTGCATCCCTATAGTGATTA
TGAAGAATGTCGTTTATATAGCTTTTACTATGGGTTAAAATTGCATTGTTCTTCAGGTTT
TTTATAGAAATCCTCTTGTATGGAATGATCTCTTAGAGAAAGCTGCAGGATCAGTTGACC
CCACAACTTTAACGTGGCATTGCTACTGCCTTAGACACTGACATACACTGAAAGACATTA
TTACCATTTTTAATCTATATACTCTAGTCGATACACTACTGGTTGCAATCAGTTGTCATC
ATCTGTTCATGCCTAATTAAGAGTACACCTAATAACTTCTAATCTGTAATTTGTCAATGC
TAATGCAGAGTAATAGTTTGGGACTTGAACTGTTTGCCATCCAGCTTTGTATCTCGAATC
CTCATCATCGTTCCACAATCCACATGAGACCATTTAATGAATATTTTTTTGCTAATAGAT
CTGAAGGTGCAGATCCAATTACCAGATGATGTTGCAGAAAACACGAAAGTACTTTTGTCG
ATAAAAAATTAAAAAAAGCTTGTTATCAGTTGACCATATTTTGAATTTGTGTCTGGTGCT
GTATGTCAGTTATTTGCCTTCTACATTTTTTATTTTTTTTGTTTCTTGCTTGTACATTTG
GAATGGCAGTGCCAAATTAAGTAGGTATGGATCTAGGAATACTGGCTTCGTTCTACTTAT
TTTGCAATTTTTTGCTTAGCAAGTGTATTTTTACTTCATAAGAGCCCTTTTTAGCAGCAG
TATGTTACAAAAGCTAAGCAGTGATGTGAATAATTGGTTTCTTACATTTCCATCAAAATT
CCAACTATTTGTTTTTACATGCACTGATGTCTTATATGATCACAGTATACTGTTTAAGTT
GGATCTTATATGCATTTGTATGCATCTCATTGCTGTTTGTTTCTTCTTGGACTGTGTGCA
TCTTCGATTCAGAGGCCGGAAATAATAGAACTCTTCCATTTTCTAAAGAAAGAAATGTTT
TTCTTCTTTCAATGGTAAATGCTGATATAGTTGCTGGTTAGGGGCAAACTGGCATGGCAA
AGATCATAAGGATGGGAAAATGACAGGCGACGAAGATGATTCTGATTTGGATTTGGCCTG
GAAAATGTTGAATACTGCAAGGGTAATAGTTGCCAAGAGTCCAGACAAGACAATGGAGAA
GGTTAATATATTGAATCTTCTTGCTGAAATCTCCATGAGAAGAGGTAACCTCAACTATCT
CAGTTACTAGTGTGTAAGACTGGTGAATGGTCATTTAAGGTCTCACATTTAATGACAGGC
GACCGAGACAGCGCAATCGGTTACTACATCGAAGCTTTAGCGATCTTGGAGCATCTGGTT
AGGCCTGACAATTTTCGAATTTTCGAGCAGTATCCTCCTTGTGGTGATAATATTGTGAAT
CACTCTGACGTATAAATCAGCATGTTAGTGTATGGTTTTAAATAATTTGAGTTAACCCAA
ATATTGCACGGGTGCCTTCACCTGCTGAAATCCACATGTAAGTGTACATTTGGGGACGAA
CTGTAATCACCAGAGAGAAATCTCAGGTAGATAATGCTGGTCTGTTCTAATACTTTCGTC
TTTGAGTTCGATTCATCCTTTGTTGATTACCTTAATTCAGTTCTAGAAACGTCCGCATAA
GTTTGGCCTTCGAGTTAGCATCCAAGGTTGGGAATGCAATCCCATATTGTGCAAAGGCTA
TTTCAGTAGGCAAGTCGCGTATGCATAATCTGATAAATGCCAAGGAAGCTTTGTTGTCTG
CTGAAGGACGCTCAGGGAAGTTGACTCTAGAAGATGAGATATCTTACCTTGCTAGAATGT
TGCCTCGTCTCCAGAAGAAGGTGAACAGACTAAATTCTACTCATGTTACCAATTTGGTTC
TGCTCATGAATCTAGTAGTGCTCTATGATCGAAGAAGAACGTTTTCCGTGCTTATAAGGA
ACAATAATAACATCTCTCTTAATTGTTTTGGTTCAGCTTGAAGAACTGGAGCAAGCAGTG
TCAACCCCAAGCGATGGCATAGATCATAATAAGAAGCGGGTGGTCTCAGTGACAAGTCAT
GAGCAGAATGTTAGCCGTGGTGTGGCAGGAGCTGCATCTTTGACTTGTTCACAGACGTCT
GGATCAAACAACAGCTTTCATTCCCCAACTATGTCTACGGCAGCAGCAGCAACAGGAAGC
ACTGGAGGTAGTGTAACTGAGCTTGTGATTGTTGGCAGAGACATGAAACGAGCTAATGAT
GACAAGCCGATCTCGGACGAACCTTCTCCAAAGAGACTTGCAGCAGATGATTCACCATCC
GTGAATGAAACGTGATAGCAGCTAGTTAGAAGATCTGAAACTGCCAAGATATGCCTGGAA
TGTCCTCCCAAGATGTTTACTAGTCTGTTCATGATCAATGCTTATTCTGTTGAACTGTAT
GCAAGTAGGGAGATACAAGTTTCTGTCATTCAGTATTTGATCTGGTCACTAGATATTCCT
AGCATTAGCACACAATAACCGATGGATTATCAGTGGCTCTCTGCAGTGCTATAGTCATCC
ATTGTTTTCTACTCCCTCCGTTCNNNNNNNNNAGTCTTTTAAGAGATTTCACTAGATGTC
TATATTCAAAGCAAAATGGGTGAATCTATACACTAAACTATGACTATATACATCCGTACG
TAGTCATCTATTGAAATCTCTTAAAAGACTTANATTTAGGAACGGAGGGAGTAGCTGTTT
TGCAGTGGTTCGCCGTCCATCACCTTTCATTGTATATCCGACTGCAATTTTTGCCCTGCT
TTGATAAACCTTCCATTGTTTGCTCCTTACTGTCTGCATATGTATGGCCTCCGCCCCGAA
TTTAGTGTTAGATACATCATACATTCATATCTAAGAAAAATAATTTGGGACGGAGGTAAT
ACTTCTTAATCAAAACTCATATTATTTTATTATTTTTTGCCTTACTTAATTGATCAGATA
GCATTATATGCCTCTTAGAGGAGTTGGCATATCAATCTGCTGCTAATAATGTGCAAGTCA
GTGATCATTTGAGAAACATTATATATGGTCTACATGTTGCATCGGTTGGAATAAAACATT
GGATTTTACAACAAATACATTTACAGATGAACCATACGTTTACAGACTACACATTACATT
TGTTGCAAACGAGCTCAGATCTCTGACCGAGCAAACAGATGCACAGCAAAGTTGGAATGA
ATTAAGCTGATGGGATCTAGTAGTACTAGAGGCCGGACAACATGGCGGCCAGGGATGTAG
GTGAGGGCCATGGCATCCTGCTGCACAACCGGATCATCTCAGGTGAGAAGGCTGGACATG
GCAAGCCGTAGATGGGCTCGTCAGGCTCTGGCGGCTTTGGCTGCCTTCCCTCCTCTATCT
GGTGGTGTTGGTCGTTCCCGGTGGCTTCCTCCTCCACCTCCGGCTGAGCTTCTGGGGGCG
CAGCCGGACCGTCATCGTTGTGATGTAACATCCAGCTAGGGATATCTTGTTCCATGTTGT
GGTGGTAGTCGGTGTTGTCTTGTGCTGGAGCCGCATCCAGCAGCTGTAGGTGTTCATCCG
AGTAGTTGCCTCAGATTGTGCAAGAAGTTGCTAGGCGACGGACCATCGTCGTCCATCTCT
TTCCCCTTCGGCTGAGCTGCCGGCGCCATGGCCGGATCACCTCCTGGCCCAGCCATGACA
ACGTTGTTCTGGTATGTGCCATTCACGTTGTCGAAGAAGTTGCCGTCCATCTCTCTCCCC
TCCGGCTGAGCTACCGGCGGCGCGGCCAGATAGCCTCCTGGCCCAGCCATGAAGACGTTG
TTCTAGTATAAGCCATCCATGTTGTCCATCTCTTGCACTTCCGGCTGAGCTGTCGGCGGC
GCGGCCAGATAGCCTCCTGGCTGAACCATGAAGACGTTGTTCACGTTATCCAAGAAGTTG
ACGTCCATCTCTTGCACTTCCGGCTGAGCTGCGGGCGGCGTGGCCAGATAGCCTCCTGGC
TGAACCATGAAGACGTTGTTCACGTTATCCAAGAAGTTGCAGTCCATCTCTTGCACTTCT
GGCTGAGCTGCCGGCAGCGCGGCCAG