morexGenes - Barley RNA-seq Database

Contig contig_368834
Source Contig contig_368834
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_368834 (5512 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_368834

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_51270	2	677 bp	None	Available	Available	None
MLOC_51269	1	458 bp	None	Available	Available	None
CDS Structure of MLOC_51270

CDS Structure of MLOC_51269

Contig Sequence (5512 bp)

>contig_368834 5512 assembly3_WGSMorex_rbca.fasta
CCCCCCCCCCGCGGCGGCCCCGCCGCGGACCTCTCCCCCGACGACCCGGCCGCCGCCGCC
ATCCCGAGCTGGCGCCGCTTCTCCTGCGACGAGGACGTCTGGTGCGTCAAGAAGCTCGGC
GGCGCAGCTGACGGCGATGGCAATGCCGGCGACGATGACGACGACTGGACGACGGCGCCA
CCGGCTGACGTCCTGTTCGTGGATCCCCGGGAGTTCTGACGCCGACGACCTTCCAGAATT
AATGCCATCCGTTTTGATTTCTGCCGACGACGGTGTAGATACATCATATACTCAAATAGC
TAGACTGACATTTGTATGGTGCAAATTGATGCAGCATCCCTCCCAGGTAGCGCAGTAACC
AAAATTAGCACTGGACAATATGGTCAGCTCCTGACTCTGTCAACTTGCTTGTTCATCTGT
CTGACAGATAGAAATAGTAGATGGACCCATGTACAATATATTAACTATTATAAGCAAAAA
AAGAGAAACTGACAGTCGACCACAGAATAGAAAAAAAAATATTGGGAATAAATTTATGAA
ACATTTTTTAAGGTACAATTTTTAGTTTCTTCAAAATTTGAATGGATCGCCATATTGTGT
TCATACTATCAATGATATGCACTAAGAACTTGAAGTGACGAGAGTCAAGTGTTAGCGGTG
GAGATTAACAGCAACCAACTGACAATAATTTAGGGTATCTAATGAGAAAACAAGTAGCAA
TCACCAGATGTCGCGGAGAAGTTATGCAGTGCATATCATTGATAGTATGAACACAACAAA
AGGATGGTAATAAGTAATGGTTCCACTGGTTGTATATTCCAGCCAAATCATCTTTGCTGC
AAAAGATCAGATATGCTAACACCAAAGCCCAGAAACAGAAGGCTCTTACAACAATTTGAT
GGGTCCAGTTCAACTGCCAGTCCACAAAAGAAAGAACCCATTTTGAGACCACATCGTACC
TACCCCGTAAGGCATAAAAAGGAGCTCAAAAACTAATCAACATATAGGACCTGAAAAAAT
TTCGTCGGCCCTGGTCACAGAGCGTGTTTTCAGACAATCAAAACAGAAACAGCTGAATCT
ACACAAATGATGAACAAATTAATCATCTGTGTTTGATAAGTGTTTGCACAGAAAGGAATG
CATAGAATAACACAACTGACGCACAAAAAACAATTGAGCGATTCAGAATATGTTCTAAAA
ATAAAGAATGGAATGCAACCTAGGATAAACTACATTGACACATTCAATGGAGCAACCGCT
GATGCAACAAAGACAAAACATATGGAGGTCAGAATAGAGGTGCATATAATTCTTTCCAAG
TGCACTAAGAAAACAAACAGATGGTTATTCTTTTATTACAAATGGATTGAATTTTTTTAT
GTCACATCGTTGTATATTTTTTCAAAACTACCCAAAGAACATTCTTCGCATTTGTCCTGG
TCTAAAGAACTTTAATGGATAGGAGGCTACAAATTAAAGGCAAAAGCATATCTATTGTTG
GCTATCATATGCAGATTGAGAATAAATTTTATGACTATGTCATGACACCATACCTGCGCC
TAATAAAGACTGCAATATGGACAATAATGCGCACAATAAGTCCAATCTGCTTGCATGACA
CTATGCACCTAATTCTAATATGAACGGCAATTTGGCCAAGGAAAAACAAAATATCAGTCC
AATCAGATAGTGAGCCACTCAAGGAAAGAAAAAACAGATCTTACAGAAAAAGGGGCGGAA
AGGGATACATAACAGCAATCCACTTTAGACGCCCTTGTAGGTGCATCAGGAATGTACCAA
AATAATAACTGAAAAGGGAAAATAAATAGCTAGTATACATATGCTAGAAGGAATCAAGGA
ACAAGGAGGGTAAGACCGAAAAGTAGTTAGTGAATGGTAATGTGTAGTTCAACATATTAT
TATTTATTTTACACCAACAGACATAGAGACTGTTTTCTGAATGAAAATGTTAGCAAGATA
GGCATATGTGTCTTTTGGAAAGCAATAGATTCAAAAGAATAAAGAGGAGCATGCATATTT
ATTTTAATATATTCTCTAAATGGTTTGTCCAGGAGCACTCGGCGAGTCTCTATTGGTACT
CACTATCCAAATAACTCCCTTCCCATCACACCCTATTACATCAGTCTTGCTTCGTTCTGC
AGAATGCTGCTAATGTCAGAAATATATTGGAAGCTATAGATTTTCCACCATGTCAGACAC
TCCAAGAAGAGCAAAGATTAGGTCAATACAATCATAGTGGAACCCACTGTTGTGATGAAT
AGGATGATGATATGTGTCCATCAATTTTTCTTACTTTATAGAACACATAAAGTATTTCCT
CCTCATAGCTATCGTGGATGAATGTATGACATGCTTATCTTTATAATTTGCAAGGCCTAT
GCTGAACTTATTCTACATTATGACCACAACGCTGACACGAGAGTATATCCCCATGAGATT
CCTGTCAATATAGGCAAACTACAACAATCAATAGTACGATCACACGTGGCGACAACTCTT
ATCGTATATCCTCGTCTAAAGTTAAACCCAAAAAAACATAAACATTTCTAATATAAGAAT
AAGTAAATCACAGTCTGGAGAGAAGAAAATACTTTTTGTGGCCAATAAGAATTGATTCTC
CATTTCACAAACTGATTACACTCTAGAGTAAATGGCTGTGAACTATTTATTTAGTATTAG
GCATTAAAATACGACTGGGCAGTCATGCTACAAATGAAAAATTTGCCAAATCTAGTGATC
ATAGTCCAGCACTCCAGCGTAGAATTAACCGTGCTTAAACCAGGTGGGATGGTAAATAGG
CAGCACATGGAAGCTGATACACATATTACATAAGGAGCAAGGGTTCAGGACTATAATTCG
CTTGATCGAATTTCTTAATCGATTATGCATTTTCAGCTGCAGAAGAGGAAAGCATGGATT
CAGCATTTTTGATGTAGTAATGTTTCTGGTTCAAAGTAGAGGCAGAGAAACTAGCGACAA
ATAATTAGTTGACAGAGCTCATAAACTTATCAGTTCAAGTATTTCTCATCCACTGTAGAC
AAATAGCTTCCTTAGTTACCTATATACTGATAACTTGCCACTCCAATCATGTCAAGTGCA
TGATTTTAAGCCAAGTACAATGGTAGGACGAAAATAGCATAAACAAAGCTGCTCTCCTTG
TGAATATATTCCTAGTTGAAATGAAACTGTATCTAGTGACCACCTCTCAGAGCAAGCACA
AGATGGAGCACTGAACCACCTTCAATGTTGTAATCTTTAGCAGTTTTATCGTCAGCAAGT
TGCTTCCCAGCATAAATGAGCCTGCAAAAGCAACAATCAGAGTAAGGATGATGTGCTAGT
AAACGTTACAGGATTTCAAAGTCTAAACCCGGGTTGAAACAGGGCAGTGCTATGACTACG
ATAGGACGTCCAACTGGACAATATAATTACTTTGACAAGAAATTTCCCTCAATCCATGTA
CAGATGTCCTCAACCATTAAAGTGGGCAAGCTAAAAAAGCTTAAGGATAACATATTCCTG
TATTGAAGATTATTAGTATCTGAGAAAGGACTGCTTAGACGTCAGGTTTATTTAGTTACT
CATAGAGTCATAGGCCCATGAGCATAGAAGGATCAAATCATAACTAACTGAAGTAAGAGT
CCATGTTACCAAGATTTTATAGGGATACTAATAACTGCTATATTTTTTATCCTGGCAAGG
AAAAAGTTGACACAAAGGCATGCTCACTTTTTGTATGGATTTAAGAGGGTAGCTGAAGTA
CGACACAAAGCAATTACTACTACTTAAATCCAGAAGCTATACTTCGAGCAACCACCAATA
ACGCATAAACATCAAGTTCAGGGCATACGAAGCGTACCTCTGCTGAACAGGGGGAATGCC
CTCTTTTTCCTCGACACGCTCCTTGATCCTATCAATTGTGTCGGTAGGCTCGATGTCAAT
CTCGATTTCCTTACCCGTGAGTGTCTTCACCTTGATCATAGTCCCACCCCTGAGCCTCAG
GACCAAATGAAGTGTCGACTCTTTCTGAATGTTGTAGTCGGCTAATGTCCGTCCATCGTC
CAGCTGCTTTCCAGCAAAAATTAGCCTTTGCTGGTCTGGTGGGATGCCTTCCTTGTCCTG
CGTCCATGATGCATCTACCAAAGTAAGCGATTGGTATTTCTCGGTACGTACGTAAATACA
AAGGCATACAGTGTCTCTTAACTGCTATAATCAGGAGGAAAAGTGACCATACAATTACAT
ACTACCTCTGTTTCTAAATATAAGACGTTTTGGCAGTTTATATTGAACTGCCAAAACGCC
TTATATTTAGGAACAGAGGGAGTACAAGATTAGTGTGGTAGCATATGAGTGTTGATACCA
AGGAATTCGATAACAGAAGGTACAGCGCCCTTATGGTCAAATGTGAACACTGAAATCTCA
TGGCTATATTCTTCTGCACCTCCAGACTGAGGACGCCCACGCAGAACTAAAACGGACATA
AGACTACACATTCAATGGGATCCATCTCATGATGATGCAATGAGCAGGGAACTAAATAAA
CCTAAGATGGAGAGCCCCTGAAGTGCAATTCCCGCGGGATCACGCTAGTAACTATGGGGA
AACCGCAAGTGGATGGGCAATACGCGCGGAACTCGCTAGGGGAATGAAACGGATACAGAC
AGGGCTATCGTGTCGTCTCGCTCGGGACGAGGCGCAAGCACGCGAAACGGGGGCAAGAAG
GGGAGGACCGACCTGGATCTTGGCCTTGACATTGTCGACGGTGTCGCTGCTCTCCACCTC
GAGCGTGATCGTCTTCCCCGTCAGCGTCTTCACGAAGATCTGCATCTCCTCCTAGTCCCC
TCTCCCTCCGCCTCCGAGGTTTTTCGCCTCCTCTCTCCCTCGCGGCGGCCGGTGTGTGAG
GGGAAAGGCGGAGAACGAAGGGCAGAGAAGGGCCAAAGTGGACGGGATACATAGTAATGG
GCTGTTAACTATTCAGCCCATGAGGCAGACCATAAGAAGTAGCAGGCCATATACAGATTG
CTCGGTTTGGAGACTAACGACCCTGATTCTTGGCAGCAAATAGGAGAGGCATGTTTACCA
TCTCTACTATTAAAAGGGATCTGCCGTCGTCATGATGGTTCAACCTCGTGCGACCCCCCT
CCTAACGCAGCGATACCCATCCTAGCATTTCCACCGTTCCATCGATTTTTTTCAATCCCT
CCATAAACAAGTCGAAAAATCCGTCGCTAGCACAACCAAACATGACGGTTCAATAAAAAA
CCCATTCCGCGCATACGTGAAAAAAGTGCCTCCTCGCTCAAAAAAAAAAAAAAAAAACCA
CGTCGTCCCACCTCCTTATTCCCTTCCCATCCCACGCCCCTTGCTCTCGATCTCATCTTT
CTCCTCGCTCCCAGAAGGCCGACGGCGGCGGTACCGGTCAGATCGGGGCATGACGCGAGA
CGACGGTCCCCAATCCCCTCACAGTTGCCGCCGCGAGCTCCTCCTCGTTCCC