| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
 |
No map location | No map location |
Predicted Genes from contig_368728
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_51216 |
5 |
3308 bp |
MLOC_51216.2 |
Available |
Available |
LOC_Os05g43060.1, FRAME:+3, EVALUE:0.0, 13105.m04532 protein retrotransposon, putative, centromere-specific, expressed |
| MLOC_51215 |
2 |
2460 bp |
MLOC_51215.1 |
Available |
Available |
LOC_Os05g33690.3, FRAME:+3, EVALUE:0.0, 13105.m03496 protein receptor-like protein kinase precursor, putative, expressed |
CDS Structure of MLOC_51216
CDS Structure of MLOC_51215
Contig Sequence (8318 bp)
>contig_368728 8318 assembly3_WGSMorex_rbca.fasta
TCTCCACAGGAAGATCTAAATATGGCGTAGGAANNNNNNNNNNTTATGCTACGTTACCCA
ACAACAGGTATCCGAGGACATGCTGGTCCTCCCTCACCCAGGTCGGATGAAGGGGATTCG
GCTCAGAGGTCTTCTTCCCGGCGATGTCCTTGGTGACCAGGACTTTAGCCGGTTCGGGCG
TCGTGTCGTCGATGTAGTGGAAGACGTCGGCACCCCGCAGCTGCGGCGTGATCTGTGTTC
GCCACGGAACATAGTTGGTGCGAGAGAGCTTCTCCGGGACTCCAACACTGAGCATCGGCT
GGTGGGAGGTGGAGGAAGACATGGCTAATGTGCACTTTGGGTGGTGATGGATTAGCTAAA
TTGATGAAGGAAGATTGCTCTGTATACCATGTGCGACAATGCGGGAAACGTTTTAGCCTT
CCTGGCCGACGTGATGCGTGTTAAATAGATGGGGTGCGAGCCCAATACACGTACAGGTTG
TTGGAAGATATTTTAGGAGTACAACTTGGAGGAGAAGGAAACAACAAATAAGAGAAGATA
AAGATTACATAAATATCTATCTTGTCTAACTACTCCTCCTTCGATTGTGGTAGATCCTCC
TGCCGTATACGCCAAGGATTGTTATGTTTAACACCCTTTTCTTCAATGGGGATCTAAAAC
CTCGCTCATCATATGAGATTTTGAGCTTGTTCCACAGGTCTTGCGACAAAGCAGCCTCAA
GGTTGATCTGTTGTGACATCATGAGCCACTAATGAGCAACAGGGTCCCCTCTGTGATTTT
TGTCATTTCCCCCACAAATCCATCCAGGTTCACCATGTGTTGCTCGAGGGACAAGTTTGT
CCAGAACTTGACAGTTCTCAAGATCAATCTTAGTGCCTGAATAATAAAGATCCATTTGAC
GTTGTCAAAAATTACAGAGTTCATATACTTTCACAAATAACAAATCACAGCTGAAGTGAC
AATATTAAAGCATAGTTGTTATCATTTGAAATCCAAAATCTAGTTATGGACTCAAATCAT
TCCCAACCGGGACTTCAAATAATTCTTGAACAAAGCGCCAAATATTTTTAGGCATCACAC
AATAAAAAAAGTGCAATACACTCATTGTCAACACAGAAACACAATCAAGGGGTTTGATTA
TGTGTCTTTTCCTGAGATTATCTCAAGTTATCAACTTATTGTGAGAGAGCAACCAACGGA
AGAAATGAACCTTGGGGGAACCTTCAGTTTCCACCTCACAATCCCTAGTGACCATCCAAA
ACGAATAAGTAAAAAAGATCTGGGACTGATCTATGTTTTCAACCCCGCATGGAATTGATA
TAAATTTCTACACCTGCATTTATTTTACACATGTAAATTACTGGTTATAGCTAATTTTCC
GCTTGGAAACAAAACTACCAGTTCACACGTGTATTCTAAACGAGTTGAATACAGTAAAAA
ACGGTAATCTAAACGGGGCCTTAAGATTTTCTTTTCCTCGTATCGAGGTGGGGGCAAAAT
TTCGTGTTTTGATTCTTTTATGAAAGTTGATCAAGATCTAACCCATATTGATAAAAAATT
CGTGATCCGACTCTTTTCTTACCGTCGGGGTTCATGACGGTAGGGCATACCCTCGAGGTC
CATGATGGTAGGAAACTTATCCACATCAATGCGATGCACACCTACCTTCAAATAGGCTGG
CGATAGCCTGTACAACCCTATCATCGAAGTGCCCGGCAATAGATGCAAACACTCACTGTA
TCCGATATTTAGCAAAAATTCACAATAGGACGTGCACCCCTACCGCCAGGGTCCTTGACG
GTAGGTACCCTATCATCATGGACCCCGACGATAGGAAACTTATCCACATCAACGCGATGC
ACACCTACCTTCAAATAGGCTTGTGACAGCCTGTATAACCTTACCGCCGAGGTGCCCAGC
AACAGATGCAAACACGCTTTGTATCCGATACTTAGCAAAAATTCACAGTAGGACGTGCAC
CCTTACCGTCACGGTTCTTGAGGGTAGACTGTTATACCCTATCATCATAAACCTGACGAT
AGGAAAAAATAGATCCTGATTTTTTTATAAATAGTGTGAGATCTCGATCAACTTTTGTAA
AAATATCAAAACATGAAATTTAGCCTAGAGGAGGAGAGTTCGTGCTGCCGCGCCCGAGTG
GGAGAGGCCCCGTCGTGGCGACAAAAGAAGAACCCCCCAGCTCGTCGCACGAACGAAATT
AACAGCAAGAACGTTCAGTAATCAGATGCGCTGACAGTGCTCTGCCCACTAAAGTCCACG
CGCAATTAGCTAGTACATCCACTGGGTGGATCACTGTTTTCTTCTTTTCATTCGAGTGAA
CCAGTCACCATGACCGTGCCCGCACGTGTTCATCGCGTCGCCACGCGGCACTGCATCTCA
GACTCTCAGCATGCCACTTGCTTTTTACCGTTGGTTTTGCTGGCCCCGCAGTCTCCGATC
TCAGGGGGTCGATCACCCCACTCGGCCGCGCTTCCATGTCGGGACGACGATGCTCCATGG
AAGAAGAAGCGAGACCACAAAAATCCAAGGACGCAACAACTCCATCTCTGACTGTTACAT
TACTGCCCCTGGTTAATTGCCCTGTTCCGCCGCGTTAACTTACTGCCTCTGACATAGTGG
ATCAGGCTACTACTGGCCGTGTTGGTCTGACATAGAGGTAAAAGAAGAGACACGTTCTCG
CCAGCCAGCAAAGCTGCGTGTGCGCTTTGGGTAAGGGTAAGGTTCTGTTTGGTTTCAAAT
TAGTCATCAACTTATAAGTTGAAAAGTGTAAAAAATGACTTATTTTGTCAAATAAACCCA
ACTTATAAGTCATAAGTTGCTCCACCTCAACTTAAAACTTATAAGTCATCCACTTTTACA
TAGAAATGTGTGGTCAGGTGACTTATAAGTCAGATGACAACCATAGAGGCGTGACTTATA
AGAAACCTGACTTATTGAAACCAAACAGCACCTTAGGTGATGTGGATAGTAATTGTGTGG
ATATGCACATCTTGGGAACCATCTGGGATCCTGTCATCTTTGCGATAGCAACCCTCCGTG
TCGGACGCGGTGTGTCCTGCATCAGTGCATCTACCCTGAAGCTCGTTGGATCAAGGGAAC
CAACCAAGTTTCATTCACATTGGCCATCGTTCGTGTCACTCATTCTGTTACATTCACACA
GCTGTACAAAAACAACAAGATGTTCATTCTTACTCGGGGTGGATCCAACGACACGACCAA
GGCAGATACACGAGCACCGCACCGGACAAATCACACGCACCCAGCCCCGTATGGCCGCGT
CCTCTTCCCCCTCCTAAACCTCTCCAGCTCAGAAAAATAAAAAAGAATCCAGTAGCACGG
GTAGATCCAGCAACGAGCTCGACCACCGTCACTGACGCGTGGGCCCGGAAGAAGACGGAC
CCAGCCGAAGCGGGACCACGGCTGAATCTCATTCCCACGTATCGCCAACAGCTAGTTTTT
TTTACTGCCGCAGAACCATCTCGGCTCCCCAGGCCGGAGGCATTCATGGCGCCCAACAGC
CACAAGGGCGGGGGCGGGACCCGCATGTCATTGCCTCCGGGCGTGCGCGCGGCCCCACCC
GAGCCTGAGGCTCGGACAGCCGTTTGAGCCACCGAGCCATAAAAAACGCGACAGGTCAGC
GGAAAAGGGGAGGTAGTGGAGAAAGAGCTGCGAGCAGAGGACGCCAAGCGAAGCAGAGTT
GATTACTCCCACCGCACCACCACCACTTCGTCTCCACCTCCGACCGAATCCGTCCTCGCC
AAGCCACCATCATTGCGCCACCGCCGCCTCGCTAGTTTCCTACTCTTTCCTTGCGAGCTA
CTGCTGCCGCCGTGCCTGGCTGCCTGCCTTCTCGCCGAAGCCTTCCTCCTTGCACTCGCC
TTGCACTGGAGTGGAGTGGAGTGGGCGTGGGAGCGAGCTAGCCGCCACCCACCACCACGC
CCCCATTAAAGGCGCTCACGCAGCACCGCCATCTCCATCTCCATCTCCACGAGAAAGGGA
GCTGAGAGAGAGAGAGAGAGACTGCGTGCGTGCTCCATTCCTCCCCTCACGGGAGCAGCA
GCAAAGGCCGCCAACGCCCCCACGCCGCACCGCGGGCCTTTAAAGCAGGGGAGGGCGGCG
CGCCACCTTAAAGATTCCCCACGCCGCAGCTCGCTCTCCCGCCACGAGGTTGATCGCTGC
TTTTAATTCTTCCTTCTTGCAGAAGACCTTCCATTCCGTTGCAAGCTTGCGCGCGCGCGA
ACCGAGGTGCTTTGTGGGAATGGCGCGGCTCGGCGCTGTCGTGGCGGTGTTCTTGGCGGT
GGCGGTCGTGGCGGAGGGCATTCTTGACCCTGTGGACTTCCTCGCGCTGCAGGCGGTGCG
GAGGTCGCTGGATGACATGCCAGGCTCGGCCTACTTCGACGGCTGGGACTTCACGGCCGA
CCCCTGCGGCTTCCCCGGCGTGTACTGCAACGGGAACAGGGTGTCGGCGCTCGCGCTCGG
CGACCCGAGGGCGGGGTCGCCGGGGCTGACCGGGAGGCTCGACCCGGCGCTGGGCCGGAT
GTCCGCGCTCACCGAACTCTCGCTCGTGCCCGGCCGCGTCCAGGGCGAGCTCCCGGACTC
CCTCGCCTCCTGCTCCAACCTACGCTTCTTGGCCGTCAGCAAGAACCTCATCTCCGGCCG
GATACCGGACGGCATTGGCGCGCTGTCCAACCTCCGGACGCTCGACGTCAGCTTCAACCA
GATCTCCGGCGCCATCCCGCCGTCCATTGCGTCGCTGCCGTCGATCACCAACCTCATCCT
CTGCCACAACCAGCTCACCGGCGGCATCCCGTCGTTCCCGGACTCCTCGCCGCTCCTCCG
GATGGACCTCAAGCATAATGCCCTCTCCGGCGGCGTGCCCAGCCTGCCGGGCTCGCTGCA
GTACCTCTCGCTCGCGGCGAACCATCTCACCGGCAACGTGGACTCGGTGCTGCCCCGCCT
GACTCGGCTCAACTACCTCGACCTCAGCATGAACCAGCTCCAGGGGCCGGTTCCGTCGTC
CGTCTTCACATTGCCGCTCTCCGTGCTCCAGCTTCAGCGCAACTTCTTCTCCGGCCTCCT
CCAGCCGACGAGCGACGTGACGATCCCGGTGGTGGACCTAAGCTACAACCGTTTCTGGGG
TCCTCTGTCGCCGCTCCTGGCGGGCATTGGGCAGCTGTACCTGAACAACAACAGGTTCAC
CGGCGATGTGCCGTCGCGGCTGGTGCAAGAGCTGGTGGGCACCGGTGGGCTGCAGCTGCT
GTACCTGCAGCACAACTTCCTCACCGGCATCGAAATATCGCCGTCGTCATCACTCCCCTC
CGGCGTCTCGCTGTGCCTGATGTACAACTGCATGGTGCCGCCGGTGTACGCGCCGTGCCC
GATTAAGGCCGGCACGCAGAACACGCGGCCGGCCGACCAGTGCCCGGAATGGAGGGGCTA
ACCAAGATGGCTGCTGGCTGCTGCTCCAAGAACCAGAAGCAGAAGGCAGGACAACACCAT
TGCCGCCGGATCGCCTCTGATCGGGGAGGAGGACACAAGAATGGAGGAGATTGCAAACGG
TGGTCTCTGATTCTTTGATTAAATTTGTCAAGTTTACTACTGTGGATTATTATTCTTTTT
GTGAGGGAGGGGATAGTCACAGACACAAGAAGTTGGTGCTTTAATAATCGTGGTTTATAT
AGGTGTAATTTTTTGTTTAGCTGGTGTAAGTGTATGTGCTTGTGTCTCTGTTGTATAGAC
AGTGAGTGAGTAAGAAGTGAACATTGGCTCTTGATGTTGCCCCAACGATGATGATGGTAT
TAGAATCAGTGGTGTTTTAATCGGTTTATTATGATCACCAAATATGGCAATGTGGCACGC
ATTCGCTGTCGAAATTTGTAGTACGACGCTGTACGAGATTGAATGAAAATGATGAACAAT
GTGGACTCTAAGCATGTGTTGTGTCGATTGCATTTCGTGATCATGTGTTATTTAGACTCA
GTGGTGTGAGATATCATTCGATCGACCTTTTTGCTGTGGGGCGTTCAAATTGTACTTGGC
TTCTACGCGAGCAACCATGATGCATGCATCTGCACATCTCAAGCCAGGCTTAGGGAGCCT
GAGTATGGTGACTACAAATAACTTATTACCAGTTCCTATTGCTTGGCTTGCAGATTTTGT
TTCTGTGTATCGCCGGGAAGTTCGCGCCGCTGTGAACTTCAACAACTGAATGATTGTGGC
GAAAATAAAGTGTTTTCTGACACTGAATTCACTTTGCTCCATTCCCCTGTTTCCCCTTGC
GTCCTTATCAACTGGCCAAGCTGTTTTGGTTCGATAACTTGTCTGGTAAAAAACACGGGC
TTTGCTGGGAATTTGCTGATTTACAGCTCGATGTTGGGATGCTGCGGCTGCTGAATGCTC
CGAGCAGACAGCAGCGTAAGTATGCACGCTAATTGACATTTAATTAACCTTTCTCCGAAC
CACGGACGGAGTGATGTTGAAGATGACACCGGAGTAACCGTACGTGCTTTAAGTTTAAGC
CCTTGGCGCGTACGCTGCTCCGTAGCAGCACGTACAGGAAGAGGCAAAAGCATCGAAGTC
GCCGGCGATCTCCGGCAAATGTACGCCGCTGTACATGCCTACGTTCGCGCGAGAACAGTC
TTGTGGATCTGCACGAAACTGAGAATACAACCCAGGATCGTCGCGTACGCGTTAAGGCCG
GGAGGGGCCCCGGACGGGCCGTGCGCCGGCCGCATTGCCTTCTCGCCGGCCTCGGCATTG
AAGACGGCGCGGACGGCGGATCGCACCGCCCGTACGCGCATCGTCGTACTAGGAGAGAAG
GTGTGTGTACAACTTGGTACCGCGCGAGATGCGGACGGGACGAGCTTTATTGGTAGCCTT
TGCCGCGGTGAGCGTGACGAGCATTCACTGCCCCCCTATGATGCGTTCCTTTTCTCTTCT
TTTCGTAGATGTTTTATGCTACGACAACGTGACCACGCCTTTGCCGGGGAAACGAACACA
CGAATGTGCTGTCACTCTCGATCAAAACTCCTCTTTGTTTGAATAGAAACTCGTCAAACT
AAACCTGTGATGGTAACTGGGCCGGAACCGAGACGAACGCCATCCGCCGGTCCTGTGGCT
GTAGGCCACCGCCGACGCGCGCAAAGTGGATAGGGGTCGTGGTTTGGTGGGCACAGCAAC
GATGATGTGCTGCTGGCTGCTGCAGCTGAGCAAAGCAGGGTTCGTGATCCTGCGCCGCCC
CCTTTGTGTTTGTGACCTCTGTCTGAGCTTTTCTCCCTCGCCATGTCTGTCATGTGTTGG
GGCCTCGGGGCTCGCTCTGGGAGCGTGACGCCGACTGCTCTCTTTCGGTGTCCGGGTTCG
TTTTTGACTGCTCGGCCCGGTCCTTTTTTGGCATGGAAGATGGAATCGATCGCGAGAATT
TCAGCGTCGTGCCGCACCTGTCACCGGAGGGGGAAAAGCAAAGGTTTGTCGTGGAAGAAG
AAGATCAGGTTGCTTTCGCGCTCTCATTTTTGTTCTTCTGTATGAACCCTCGCTCTCAAT
CTCACTTTGTATTTGCAAGGTTGTATCGCCGCTGCAATGACTTGGATCTGAGTAACAGTC
TTGTGCTAACAGCTATTGAGAACAATTTCAACCGCGCGATCCAAACAGACGTGTGCTTTG
TTCGTATATTGTCCGTTTGGATCGGTCGGGCAAAACATCTATGTCCGTTATTGTAATTGA
ATCGGCCCGCGTCCAACCTGATCATGACCCATTTTTAGACGGCACGAAAAATATTATAAT
AAATATTTCAGAAACACAAAATCATTAATTAAACATTAATACCGGCCTCCGGCGATAGTC
TCACGAGTCCATATTACATTAAACGAAAAATTTCATAAACTAAAAACGAGGAGGCGCTGC
CTAGGCGTCCTCCTCGTCGTCGTTGTCGGGGTCGATGAGGTCGACGAGCATCGGTACCGG
GCTAGCCCAGGGAAAGGTCGTCTCCCAGGTGGCGGCGACTTCGCTCGCTGGTGGCTGCAC
CGGCGCTGGTTGGGCAACGCGTCGCTCCTCCTCCCCAGCTTCGGCCTCACGCTCCATCAG
CTTGACCCGCCGGCCCTCTGCGCCCTCCTCCGCCACCCGCCGTTGTCGCCGGTGCTCCAG
GTAGGCCGCCTCATGCTTCGGCGTCAGACCCAACCAGACGGGTGACCCGCTGACCCACTC
GTGCACCACCCCGTCCCAGGCGTCCAACTCGGGCCTCAGGACCAGCGGCCCTGGCTCGGC
CTTCGCAGGGGACGGCAGGGCCCGCGGCGGCACGACTG
