morexGenes - Barley RNA-seq Database

Contig contig_36866

Source Contig contig_36866

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_36866 (4759 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_36866

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_51179	2	1344 bp	MLOC_51179.2	Available	Available	LOC_Os02g43550.1, FRAME:-2, EVALUE:8e-88, 13102.m04837 protein cyclin, putative, expressed
MLOC_51180	1	452 bp	MLOC_51180.1	Available	Available	None

CDS Structure of MLOC_51179

CDS Structure of MLOC_51180

Contig Sequence (4759 bp)

>contig_36866 4759 assembly3_WGSMorex_rbca.fasta
CAATCGCCCCGCCCCCCGCCTCCTCCCTCGCCCCGCCTCAGCCGCCCACCTCCAAGCGCT
GTCGGAAGACATCGTCGCTTGGGCCGAAGGGTGCTGCGGCAAAGACTAGAACCCTCAAAT
TTAACTAGTCGGGTTGGGTTTGAGGGTCCTAGTCTTTATCTCTGTTTTTCAATCCTTAAA
AGTGCTAAAAAATATTAATTCTCAACCCTTATACTGCTTTAAAGGTTTGAGGGTACTACT
CTTACTCTTAGGTCTTAGCTTGGGCGATATGGACCTCTAGAAACAAGTTTGGGGCCTTAA
CTATGACGCGGCATCGGATGTGCTTCGCAAGATCAATCTACCCCACACCATCCAGAGGAG
CACCTAGTTATTTTATATTTCCCCTTGGCGCTCTCTTGAGCTGCAACTTGAGTCCTGAAT
TTGCTGAATCTTTCTATGTCTTTCTGGCTGTAATAACTCGTATGTTTGCGACTACCGTTC
ACTTTATTAATTTAAAGCAGGGCGCGGCTTGTGCCTTTTCTCTAAAAAAATGCCCTTTAT
CGGGAGCAAAACACTCACTGCTATGGTCCACTTTTGGCATCAGTGTCACTATAACCCAAT
GTCACAATATATACATGGAATGCTAAAGTTACCAACAGGTTCATGACTGTACAAATCTGT
TTCACAAGAGAAAAATCCAGCAAAGCCTAACACGCTAGTGTCTCACTGACCTACACACCA
CAAGAAACAAAAACCAAGGACGAGTACACGATGTGAAATCATTGTTGCAAGCATCTTGCA
GCAGGGCATGGAGGAAGATGACGACCACCTAGCTATAGCTATCTGGCTAGCACTACAAAT
TTAAACACACAGACTAACAGAGATGCACGCATCATGCAACCGGCCATGTAATGTAATGCG
AACTTGCTTCCAAGCAGCCCGGTGCTGGCCGGCCGGTGGTTTCATGCCGCGAGCTGCTGC
TGGCTGCCGCAGCTGGCGGCATCGTCCTCGGATTCGGAGAGGCAGCAGTGCTGCAGCCTG
GGCGGCGCAGGAGGAGCCTCCGCGCAGAGCATCTCGGACTGGAGCACGGCGCAGTAGTGG
CCGAACGTCTCCGGCGTGACGTTGAGGTCGAACCCGACGCCAAACAGGAAGTCGACCTCC
AGGTAGTTCATCTCGACCAGGCTGATGCCCCCAACCTTGGCGAAGTACGCGTTGTTGTAG
CATCTGCATACAGAGAAACACAGGCCTTTCAAGTTTCAAGAGGGGAACACCATACCAGCA
CTGTACTTCCATATTTATCTACATTTGTTCAACCCATTCAGCTGTTTTTCTGTTTTTACA
GGGAGGATGGTGTTTGAGTCTTGCAGTCAAAGGATCAATTAAGCAACCCAACAAAGCACA
ACCAGAATTACCAACTAGGCACGAAAGTCCAAAACGTTTCTTTTAAGGATGCCAAGTTGG
GCCAATTAAGTATACTATCAATCTCAGCAAAGACAACGGGGGGAAACTGAGCGGCAAACA
TCAGCAGAGATGGCAAGTTACCAGTCGCAATCCGCCACAACTGGCACTGGATTAAGTTCC
TATCAAAAAGGCGAGTGGGCAGGGCCGGATTCTAGTCCATGTCCTCGGGTCCACGCCTCA
TGCGTGTGGTTTGGTGGAAGGAGCAGCCACCACATACGTCTTTTCTGCTCCGTGCTCGCT
CGACAGGGATAACTTTGCCGTATACTGCCTGCTTTAATTCGCAAGGACAAATCACTCTGT
GTGCCCAGTACCTAGTGCAAATCCTAGCTTGACACCGTAGTTAAAAGTAGGCACCTACTC
ACTGATTGCCCTCTCTGGTGCATTATTAGCACAGGACTGCATATGTGTCAATGATTAGTA
CTGATATTTTGTGAATCGAGGTGTCGTTCTATACAGTCTGAAGTGGCCTGAAGAAAACCT
TAACTATCTGTGTATGCACCGACAGTTACTAACTAGGAGCTGATAATGCTACATCCAAAC
CAAAGTAAATGGCTCCACAATTCTGAAAATGGAAGTGGAATGATGCTGGAGTTACTTCGA
AGGCACTCCCAAGTCTCAACCTCTTCCTAGTTGTCAGAGATTCCTAAGCCTAAGTCGAAC
AGAAGAGGAGCAAAGTATTTTGTCACAGCTCGCTACTCTTGGCACAAGAATCTCAGGTGT
TTGAACCAGCAAGCTAAATCCAAAGAACAGAGAACCAAAATCCAGGTGGTGCGATTAATG
CATCCCTCGGCAGTATTAGCAACGAGGCGTCAAAATTTTGCAGTGAGATTCTTAACCAAG
TAAGTAGAACATCACGACTGCCTACAACATAGTGACTGTTAATTAGCATAATTCCAATCA
GGGATCAGAGGCCACCAAGAAGAAGATGATCGTGTACAGAGGCACAGTCTACAAATTAGC
TGGTTGAGCTGCTGGACTAATTTATCATTATTAAGGGGAACTCACACGTCATCCATGAAC
TTGACGGCGGCGAGCACGGTGGTGATGAGGAGACGGTGCACGCTGTAGGAGTCCACGGCG
AGGGCGAAGCGGCGGGCGCGGTGCAGGAGCCGGTCGAGGTAGATGTAGGCGACGACGTAG
CACGCGGGGCTGCAACCGGCGAACCGCGCGATGCGCGCCACGTACGTGCGCACCGAGATG
CCCGGCTTGGTCGTTGCCCGGAACGCCGACGCCGACGCCGGCGGCACCCCCGCGGGCGTG
CCCACCGCGTCGTTGCACTCAGCGACGCGCTCCAGGATGCCGGCCAGGGCGGCCACCACT
CGCAGCATGTCGTCCTGCTGGGCGCCGCTCACCACCAGCTCCCCGGCCTCGGCCATGGCC
TCGTCTTGGCCTGTGGCGTACGGATGCGGTGCACGTGTTCAAGTCCCTGGGCTGATGGAG
AACAGGTGGAAGAAAATGCACGGGGTCCGTTATGTAGGACGGGGAGGGGATGGAGAAGGA
AGGCGATTAATTCATTTTTTCTGTTAGTTAATATGGTACTCCATTGTTGGGAGATGCCAT
ATGCTCATGTAGGCACGGTAAGAAAGGGGGGGAACTTTCGTTGGAGATTTGGGCCATGGA
AAACCGTTAGGATTAGGCGTACTTTTAGTGGATAGAAGTTAGGTAGTATAGTAGTAGTAG
GCTAAAGTCAAACGGCTCAAATTGCTAGGAACGTGATCATGCTTACGACTCATGTATGTA
ATATACGTGAACCTACGGTCTCGTATACACATCAAACGTGAGTTTCATTCCCACGGCGCA
AACCAATGTGTTAGGATCTTTCCATGAGAGTTTAAGTTTTAGATTTTACATTGATGTTTG
TATTTTTTTAATATTTTTTTAGACCTTTTGGCGATTTGCTTTCATTGAAATGAGAAGTTT
CTATCCATTACCAAGGTCTCTGTGATGACCTCATCAATCTTAAGATGATGTGTCGACTTA
GTCCGTCGGAGGTGTTCATAGAGATATGATATACATAGATGCGTATATAAGGATGAATGT
AGGCATGTGAATGACTTGGATTGTACTGTGTTCAAAAAACGAGCTGGTATTCGAAAAAAA
AGTTCTCTTCTCTCTGCTCCATGTAAGGGAATTCATGCATTACTACTTTATTAAAAGATG
TTGGACTATTTGTATCTTGAAGACATCCCTCCTTGTGTGCGCCTCGCAGATGCGTGTCTA
CTTCCCTCCGCTCATCCCCATCATCTGATCGGTCCTCGTCAGTTCCTCATCGAGTCGACG
GTCTCGGCGATTTGCGACGCGTGGCGCGGGGCATGCTCGGGACCACCTCGACTAGCAGTC
GTTGCCCTTATGTTGTGTGTGTTGTTTCATTCGCTTGTGTGGGCGTGGCTATAGTGCCCA
ACCCGACTAGTTATTTCGTGTGTGTGTTGGGGGGGGGGTAGTGCGTTGAATTATGGTGCA
GAGCAAACATCTTGTCGGGCGGATAATCTCCTTTCTTCATGCTCACATGTTTCCTTTGGG
TGGGTTCGCTTCCCTCCTACCTATCTGATTCGACCAATCCTATAGGTGGCCATGTGGAAT
GGTGCTCGTTCTATCTGGTCGGTGGATGCGTAGAATTGTGTTTGTTCCCTCCTTCTCTGG
TTGCTCGGTATAAGGCGAATGTATGCTCTTGAGGTTATGTCAGCGGTTAGTCTCTGGGGT
GTTTCACCCTGTAATGTGCATTTTGGTTCTCCGGGTTTGACATGTATGGCTCCCTCATTT
TCTACACAACCGTTATCTAGCAATGCCCCCCCCGTTGGCCCTCGTGCCATTCAGTTGGGT
TTAGCATTGAGGGAGGGTGAGTCCATTGGTTGGTAGAACTATGAGTCATACTCCATTGGG
TAAATGCATGTACTTCATACGTTCATTTTGTATCATGAATCTTTATTGATATTTGTCATA
TTATTGTCCGTTATTCCCTGTTATTATGTAATTCTTATTTCTTGTCTCCTTGAATATGAA
ACGTACAATATGAAAGGGAAAGTATCTAGAAACTGGAGTTCTGGACCGAGAAACCGAGAA
AAAGGCGGAAAAATCAAGTTGCTCCAAATGGCGTGAAGTTTCACGGAGAATTTTTCTAGA
ATATNNAAGAATTATTGGGCCAAAAATACACACCGCCGAGGGGTGGCCACCTGGGCACAA
GCCATCAGGCCGCCCCCCAGGTCGCGGCCTAATAGCTTGTGGGGCCCCTGTTGGTCCTTG
ACGCCCCTCTTCTCCTATATGATTTGTTTTACCCTAGAAAAAAATCAAGACATAACTTTC
GGGACGAAGCACTGCCGTC