Contig Data
morexGenes
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Map Locations of contig_368542 (5166 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_368542

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_51111 4 2147 bp MLOC_51111.2 Available Available LOC_Os01g45274.3, FRAME:-2, EVALUE:2e-113, 13101.m04642 protein carbonic anhydrase, chloroplast precursor, putative, expressed





CDS Structure of MLOC_51111






Contig Sequence (5166 bp)

>contig_368542 5166 assembly3_WGSMorex_rbca.fasta
TTTTCGGCGGTCTGAGCGCCATGTAAATCTTTTTTTGTTTCTTGAATTATCTCGCTATTT
TGTATTGCTCCAGACTATTTCGTTTCGCAATAAAATGGTTGTATGCATCACTCGATGCNN
NNNNCGGGGCAACGCCTCCTTTTCGAAAGAAAAAAACCTGGATCGGCCAGATTGGGCCTC
CACCGCCCTGCTCTGCCACCCGTCTTTGCCCGTTAGCACTTGCTGGCGGCGGCAGGGGAT
GAAGGAGGGAGAAGAGCAAAGGATAAAGGTAAATGGAATATTGCACTGTTCTCTTGGCAG
CACAGTAGTTGCATATTGCCTTGTCCTGATGTCTCTCATTCCAAGTTGGGTACATACAAA
GAGGGATAATCCCAATCTCCTCATCTAGTCATCTTGGCAGTGGAATGAAAGAATGCCTTG
TATAAATAAAGGTGAAGAAGGACATGCTGTGTAGAAAAAGGTGGGTAGCATATAAAGCCG
ATGACAGTTCAATCACTGGGTTAAAATAATACTGATAAAAATAGTAGCAATGGAGAGGCA
ATAAAATGTCTGAAAAAACAATTAGTCAGTGTCACACACCATAGGGAAGACAAAGCCAAA
AAATCAGAAGGTAAACTCTTGATGATGAATATGACTAAAATAATATCCGATGTATTCGAT
CATTTGACGATTAAATTATGCATCACATAGTAGTACAATATAATTCATTACCGGAAAATA
CTATCCCTTATTACAAAAATTGACACCAGGCTGTTGGGGATTCACAACTGGAAAATAACG
AGTAGGTACTCCATGGCATCCATATCGATGGATCGATATATCTTTGATATACTTACGTAT
GTATATATATTGGGATTTGAGCAATGGGAGGGATGATTGATTTACAGCTCCCATGTGTCG
AACTTGCCCGAGACGAAATCGTAGTGGCCGCCGATCAGCTTGAGTGTTCCGTTGGCCACA
CCCTCCTTGACGAACGGGTAGGTGCTCAGGTTCTGGAGGGACACGTTGACGGCCTCCTGT
GGATGGGAACAATTAAAAGAACTGATCTCCCTCAGGGAGTTAATCCATTCATTCATTCAC
ATTCACATCCAAGAGATAAGCAAGTAAAGGAGTATAAAATGGTACATGGCCAATGTTGCC
AGCGAACCTTTTCCAAGACGGCACATTGGTCCTCGAAAGGCAGGTCACAACACTCGTCCT
TCACCTTCTTCTTGGCCGAGAACCCGATCCTGACCCAGTCCTCAACAAAGTGGCTGACAC
AAACCAACCAAACAACTCCGGTCAGAAATTAATAGACCGAGAAAATAACCATTTAGATCC
AAGCTACGTACTTACAAGGAGTCGTCCGCGCCATCCTTGAGTGAGAGCAGGGCTTTGATT
CCACCACAGCGACTGTGGCCAATCACCACAATGACCTTCACCTTGAGGGCACAGACGGCG
TATTCGATGGCCGATCCAACGCCGGTGTGCTTGTTCTTGCAGTAGCACGGGACCATGGCG
CCGATGTTGCGGACAGTGAAGGCCTCGCCGGGTTCCAGGCCCAGGGTAACCGATGGGCAC
ACGCGCGAGTCGGCACACGCGAACAACAAGTACTGCAGAACCGATATTGTCAGTTGAAAA
ATATTCTACAGTGTTTTTTTCAAGCTCCAGCATTTGATAGTTGTTGGTGATAAGCAGAGA
TGCTATTCATTATGGCTTGGCCGTATTAGTCAGCCTGCTGATATAAAGAAAGAAATTTGT
CCATGTGCTGATATGTAAGAGCATGGCTAATAGTATAGCCAGTTTGATGGCTATATACGG
CTGTCATGTCATTTAGAAGCATCATCTATAGTCACTCATATATTAACATAAATAGTCTAT
AAGGTTGACTATTAACTAGACCTTTTTGCAACCTTATCTCTCTCTTTCATTGTATACTTA
TTACATTCGTCAAGGAGCACGCAAAAAGACAAGCTCTTGCATGTGAGTTCCTTTTAATTG
ACTCTTTTCTTCGCACAGATAAAAATGCTATGTACTGCAGGATATAAACCCCTTACCATA
TTTGCACTGGTAGGTGGAATAGACATTTCTGACATAGCTCTGTGCTGAAGGCTGACTCTT
TTGACATTCTATCTCGGACGACTTTTTATTCAGTCCAGCAAGAGGAACTAAATTTTGCTT
TTGTGACAAGGAATCGAAGAGTAGAGACAAACGGTGACAGAAAGGCGAGCAAAGCAAGTA
GAAGCAAGGTTTTTCCGTCGCCCATCCAAACCAAATTGAGCAGCACTCTGTGTGGGTTGG
TCGACGCATGCGTCCAGAATGGCCATTGGATGGAGCCTCTTCGAACCGTACGATGGCCTC
TTTTTTCCACCCCACACGGTATGATCAACGCAAGTGAAAAAAAAATCACCTTCTGTCCCA
TTTCCTGGCAGGTCGTTCACTCTCAAATTATCCTAAGAGAAGCACACTTAATTTATAGAT
TCATTGGAGACGAACTTCTTGAGAAAAAGATGCACACTTTTGATACGAGTAGTCTATCAT
TTCTATTAAACTAGAACGCCATAAGGCACCCCATCCCAAGCATCCTTAAATTGTAGGTTC
TTCAGAGATGAGCTTCCCAAAAAGAAGGTGCACCTTTTTTGTATGAGTAGTACATCATTC
GTATAGAAGTATGACTGATAAATAATGTGCACCTTCTTTTCCGAAAGCACAAAGTGAAGA
GAAAAGCTAATGATGGTCTCTGCGCTCAGTCTAGATCCAAGGTGATAGTCACGAAACCGA
TGATTGTGGCTGGGGTGTTACAAAGATGCTTTAACTTCACGGCTCCGTCTCATGTTATGA
CTGGAACTCTCACCCTGGTAAATTATTTTGATTTCCATAGATTTTCAATCGGGTTTTGAG
ACATCAATAATAGATCTTGTACAAGAGTATATCCTGACTGCTAGTCCTCCAGTATAATAT
ATAACATAAAAAGGGAAAGGAATCGTATTCCATCATCCAAAAGACAACAAAAGTGATAGG
GACGGTGACATCTGTTTAAACCAAATCATATGTCATGGCAATGCACATGTGAGCCGTTAC
CAATTAAATTTCTTGAGGGTGCGTGATCCAATTTCAACGGAAGATTAGCCAGTCTGCCAG
TGCCTATCTTGGTAGTTGGTTTAGCAGATCACCTAGTATCAAGTGGCCGGCAGTGGCCCG
CATCTTACGGTTAGCATGTGCAATTAGGACAAGTGGTCGTTTCCATTTTTATATCCACTT
TGATAGGTCATAGGAAATGCTACGGGCACCCCACCCCCCATACTCAGAACAACTGAACAA
GTACTGCTCGATAGAGGATTTAGCAGTAAGGGAGAATCACCAAATCTAGAGAACGCACTA
TTGCTGGCCAAGCTTCCGGACGAACTCAACAAGCCAATCAATCAATGGCAGAAGAAGCAA
CTAGAGTTGGTACTAGCTAGCCCGAGACAACATTTTATTTATGGCTGTACAGAGAAATGA
TGGGGTACAGTACATACCGTAGGTTCCTGGTTGGCCTTCAGGGGGCCGAAGAGGTCCGGC
TTCTTGCTGCCACAGCCCGGCCAGAGAAATAATCAGCTGAAGAAGACAAAAGAAAAAAAA
TCTCAAGCATAGCGGCAGGATCAGAGAGAGGAAGCTTACTCGTAGACCTCGGTCTTGAAC
TTGTCGAAGCCGGTCCTGAGGCGCTCCATTTTCAATCTGCAAGGGTGGTTGAAGACGAAG
GAGGACAGAGACGGAACTTGTTGGAGGATGGTAGGTGGGCTTCTCCAGGAGGAAGAAGAG
GAGGTCACTTATATAGCAGCAGGGGAGGGGAGGCCGCTCATCTCGTATGTATACATTTTT
CTTTGTGATGGTGTCTCCCCGGATCAGTAGAGGCCGGTCAAACAAGGATACCATTTATTT
TGTGGCCGATCAGAATGGCAAGAGCCTCCCTCTCCTCTTTCTCTTTTAGTACTCCTGTTG
CTCATATTATACTAAACCGGTCCATGAATCCATGGTGATTAGACCTTTATACTTGCCGCT
GAGAAGGGAGGAGATTTTTCAAGAGACCCATTGACCTCCCTGCAATAATCACTACCTTCC
CAGCGAAGTTCCTAGGCTTGCCACTCTCCATCAGAAAATTGAAGCGGGTTCATTGTGCGT
ATCTTGAGGATAACAGTATCTACAGCCGGACCCTTCATACCCGTACCCTTCCGTGAATCG
ATGGTGATTAAAAAAAACATCTAAAGTTTTGTGGCAAAAGAAATTGCATCTGAGGTCTTG
TTGCGAAAAATTTCAATACCACTACTTTCCCAGTGAAGTTCCTACCCGTTCGTGAATCGA
TGGTGATTAGTCCTTTCTTTGGCGGTGGAAAAAGAGTGGAGATTAAGAGACCTAAAGGAC
ATCTTACATCAAGAAATATCATAGCCAGTATAATTGGAAAATAACTGGACGCGGATTAAT
CAGTACAAAAAAAACTTTACATTGCAGAACAAAGTTTTGCTTATGTAAAGTTGGTTGCGA
GGGTGGTACGTTACCGTTTACGTACTTAGGGATCCCTATTCATCATCAAAAATTATCTAT
TAAAGATTGGAAGTGCATCGAGGATCGGTTTGAGAAAAAATTGAGCTGCTGGAAGGGCAA
GCTACTATCCTACGAAGGACGATTGGTTTTAGTTAACTCAGTGTTGACAAGCATGCCAAT
GTTCCTTCTATCCTTTTTTGAAGTACCAGTTGGGGTGCGAAAAAGGCTGGATTTTTACGG
ATCACGATTTTTCTGGCAGAGTGATGAGGTCAAGACCAAATATAGGCTCGCTAGATGAGA
TATTATTTGTAGGCCCAAAGATCAGGGAGGGTTGGGGATTGAAAACTTAGAGGTTAAGAA
CATGTGTTTGCTTAGCAAGTGGCTTTTCAGACTATCTAGAAGGTATGTGGCTACAAATTC
TGAAGAATAAGTATCTACAGCAAAAAACCTTAGCTCAGGTCACAGTGAGACCTGGAGATT
CACCTTTTTGGAAGGGTCTCATGAAGACAAAAACGGCTTTTTTTAACAGGACTAAATTCA
TCATAGGCAATGGTGAATCTACTGGATTCTGGGAGGATAACTGGCTAGGTGACGAGCCTC
TGGCCCTTCAATATCCGCAGCTGTATAACATTACCCAGCGCAGACAGACGACTGTTGTGG
CAGTGT