morexGenes - Barley RNA-seq Database

Contig contig_368515
Source Contig contig_368515
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_368515 (7963 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_368515

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_51098	2	2602 bp	AK368762	Available	Available	None
MLOC_51097	4	2046 bp	MLOC_51097.1	Available	Available	LOC_Os01g66360.1, FRAME:+2, EVALUE:1e-153, 13101.m07185 protein 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, putative, expressed
CDS Structure of MLOC_51098

CDS Structure of MLOC_51097

Contig Sequence (7963 bp)

>contig_368515 7963 assembly3_WGSMorex_rbca.fasta
TGGACTCTCGCGGCCGTTACCCTCTGTGTGTTGAAGTCTCCATCAACATGGACGTACGAT
AGTATCACCTATCGTAACCACGCCAAAAATCTCTGTGTCAATTTTACGTTTGATCTTCCT
ATCCCTACCCTCTACTTACATGTGCATGTCCTTACTTTCCGTTGCTATACTCTTAGNNNT
GCATGTGTAGGGTGTGCTTGACTATAATTGCTAAAACTTGTCAACTATTGAAACTGGGGA
AATGCTAAGTTTTTATTTGTCAAGTAATCTAATCACCCCCCTCTAGACATACTTCAGATC
CTATAGTAAGGTGTAGTTGATAAGCTCACCACATAGGGTACACGATAAGCAAACCTCGTT
GCGTGTATGCAACCAAACACCGTGTAATTGCATGAGCCCAGCCAATGCATGCAACCAAAC
ACACGGGCTACGAATCGGTGCTACGATGCAGTCAAGTTGTATGCAGGCGACCAAACGATG
TGCATATGATGATTTTTGGTCTGTATATGCTCAACCAGACCCAACGGAGACAAGTATGCA
ATGCAGACAACTAAACACATCATAGGTCTTTCGTGGAGATGCATCTTTGGTGGAGGTGGT
GGGGGGGGAGGGGGTTAGTCTTTCGAATAAGATCACCTAGAGCCCGCCCATCTCGACGAT
ATCATCAACGACGACGTTAATGGCCCGATGGCGTCTTTTTGTTGGTCGGTGAAGTACAGT
TTGTAGGTGTTATTGACACGGTGGTGGTCGAGGCTTATCTTTGCACTTCAGGTGTCTGCC
ATCAACTTTGTCACATTGGTTCGCTCTTCGATGCGGCCATGAGGTCTATGAGAAAGAATG
AAGGTTTGAGGGATGGTCTCTCCTTGAAGAATGAAAACTCGGATAAACAACAATAAAAAG
AGAGGAGATGTGGGTGGGAAGGAAGATTTTAAAGGGATTATATTTTCAAGACAACATGAT
ATACTTGGTCGCACAAATGAGATCGATTTTCACGCTAGATTTCAACGTCGTTGAAAAGCT
CCCCCTTGTAGAATGCAACAAAAAAACAACTTCTCGACATGTGTTAGCTCACCGACGCTT
AAATAGTCCGACTCTGACTTGCAATTATACGTGTGTCGTTTGCTGTCGTAAACAACCCAA
GCTATAAATTAGATACAAACGATCGAGTTAAATGCATCACTTAACTTACTAACCGCATGG
ATAACCTTTTCTCAATTCGCAATTACCCTTTTAGCAACACAAGTGCCTATCCGGCACCAT
CCTGAAGGCCTTCAAGGCCATCCAACTAGGAAAACAAAGATCCGTTGGTGGACCAGAAGG
CTGAAGTGTATATTGATAGATTTCAGCTCGAGCATAAACTTATGTCTCTCTACCCCAATC
CAAACTGCTAGAATCCAAAGCCTCACCCGCATGAAGGTCTACGAGCTCTCTCCCGAGTCC
CAAGGCCGAACAGGTAAAATCCAAGGCCCGATATTAAACTCTAAAGTGAGGCCTATCTTC
TAGGAAAATATTATTACAATCAATCAGCGATGATGTAGCATTTTTGAGGAGGCACATAAT
AGTGAAGATTTGAGTGATGGTCCTTTCGTGAGGAGTGAAAAATCATCGGATAAACAGCAA
AATAAAAAAGAGCAGCCATTGGATAATTGGAAAAGGGAGCCTATGACTCGTTGACGCAAA
ATGATAGACATCACCTCATCAATCAAAAGAACAAAATGATAGACAACACTCGCACGTGAC
GGAGAAAAACAGAGCTTGTGGACGGCGGGGATTGACCGGGTTGTATCCGCACCACACTTG
ACTCGCGTTCCGGGCGGGGATGCCTCCTCCCACTCTTTTTGTCGCCCCTCCGCTCCGGCC
GCCCATCGCCAGCAGCACCACCCCCTCTCCCTCCCATTGGGCCACCTACCAGCGCCTCCG
GCATGGAGCTCCGCCTCTGCCTCCACCTCCACTCCCACGCGCGCCCCCCTTCCGCCCCGA
CGCCGCCGCCATGCCCCGCGGCCGTGCTGCTTCCCGCGTCCCGCCGCCTTCGGATTGGTA
AGGACTGCTCGTGTTGCTCCAGGCCAATTGCCTCTAATCCGCTCGTTTTGGCTTGGCGCC
CCTGGGGCTGCGAACTTGCTAGAGCTCCAGTCCGATTGTCTGTAGCTGCTTATCTACTGC
TCATGTACTGAGTCCTTCCTATTTTCTGGGGTCAACGGTGGCCAGGTAGGAGCTGCGGGG
TTGCTCCGCGGCGGAGTACGAGGCGTTCGCATTCAGCCATCTGCGCTGCTGAACCGGACG
GCGCGCAGGTACGGCGGATTTCGGATGACACCCCTATGTGATGGAGTGAGCTCTTCTGGC
TGACTGAGGTTGTGTTTTGCCAGGGCGGGGAGGCTGTCAAGGAGAGGAGCGTCTCGGTGA
TCCTCCTGTCCGGAGGGCAGGGAAAGAGAATGGGGGTAAACATTCCCCTTTTTCTATCTC
ATACTCCAAACTTAGTGTATGACCTTGGGTGCGTTCTGTGTATTGCTCTGGGTTATTCTT
CACTGGTCTGATAATTCCGCTCGCAAATGCCATAGCCGTTCTTCTTTTATTGATATTGAT
ATATGCATTCTGATGGTGTATCTGTACGGCTTCTCATCATATAAGTGAAGATAAATGTAG
TATACAAGAGATTGCTATCTTTCTTGAACATTAGGAGTAGTGCCAAACAAAATGAACAGG
CATCAGTGCAATGCTTGATGGTATCAATTTTAGATTTGCTGTGAAGAATTGTGTTGCTTC
GAAATAATTTTAATACTGTGCAGTAAACTAGCAAATCCTTTCAGTGGACGATGAATGTAC
CTAAGTTTCTCTCCCCCTTTTGTGACAGGCCAATATGCCTAAGCAGTATCTACCATTACT
GGGAGTACCAATTGCACTGCACAGGTTCATCTCCTTGGCTTAGAACTTGTTAATTCTCTG
ATTTGGCAATTTCATGCAGACGTGAAATGCTTACATTTCTGTCCTGCAGTTTAAAGACAT
TCTGTGCAATGAAGGAAGTGAAAGAAGTCGTGGTGGTGTGTGATCCATCCTACAAAAATG
TATTTGAAGGTTCGTCTGGACTCATCCTATACTCATTGTCTTTACTCTGCTTTTATCTAT
CTAGTATCTACGCCTTGTTAGAATTAAGTCCTGTGACCAAATTTAAAGAGTGATACAGTA
CGGTCTCAGAGTAAGATGTTCATCAGTCAACTGTTTCCGCAGGTTCTGCTGAAAATTTGC
AAATACCTATTAAATTTACAACCCCGGGAAAAGAGAGACAAGACTCTGTTTTTAATGGAC
TTCAGGTTAGTGTTAGCCTACCTATACTTTCTGTTAGGTTGCTCGCTTTTGTACCGCAAA
TACGGTAGATATCTGCAAAAATTGTTAATTTTGTGAACAAAAAATTTTGTCCGCAGGAAA
TTAATGGAGATTCAGAACTTGTTTGTGTCCATGATTCTGCAAGACCCTTGGTATCCTCTG
AAGATGTGAAAAAGGTTACCTTGAATTATCCATCATAGCGTGTCTTGCAAGATGTTATTG
AATCTTTTTCTTCTGCTCCTACGAAGGGAACTTCTTGTAGTCTTTTACTGACAGAAAACT
CTCTCTTAGAAGTTGCAACTGATAATTTTGGAATTATACTATATGCATGATAAATTATCT
GGCTTTGAACTTCATCCTGGTGCTTTGGTATTTTATAGTAACTTTGTAAAGAGATAAAAG
TAATATTTGTAAAATCTTGCAGGTCGCTCAAGGAATAATATTTATATTGATTTTTCTGAC
TAGGTCTTAGAAGATGCTGCGGTGCATGGAGCAGCTGTTCTCGGTGTGCCCGTCAAAGCT
ACTATAAAGGAGGTGACTGTTTATACATCCAGATATTCATCAACAAGATGATCTTGCAAA
GATCCTTTCAAGTTATCTAATAATAGCAGACTGTATGAATGATCTTCCAACGGAATTCCT
GCTTTGGCAACTATAATTTCCCTCTCCCCTGCTCTCTTCAGGCCAACAGCGATTCTTTCG
TCGTAAAAACCCTTGATAGGAAAACTCTTTGGGAAATGCAAACTCCGCAGGTAATCATAG
TATTCTATTCCCTGTATTTGCATTTTCATTTGCTTTATTTGTGGGAAAACAGTTGGCTAG
AAAAATCATTCTGATTGTAGGTAATGAAGCCTAATCTGCTCAGAGATGGTTTCGAGCTTG
TTAAGAGGTTAGCTGGATCACAGCAAATATAATCTGCTGATGTGGCTAATTCCCGCTCCT
CCTTGCTGACTAAACTCTGAACTCGCAGGGATGGCCTTGAGGTCACTGATGATGTTTCCA
TTGTAGAATACTTGAAACATCCTGTTTACATCACCGAGGGCTCTTATACAAACATCAAGG
TATCATGTTAACTATTTGAACTAGTCTATTCTGAACTGTTAAGTTTGAATAAACTGATCC
TTAAAATGTGAACTTATTGCAGGTGACTACTCCTGATGACATGCTCCTAGCTGAGCGTTT
GATGAATGATAAATAGGGCCGATATGAACAATATTTACTTGATTTGAGAGGCACCTGTAT
GAATTTATCAGCACGAAATTCCATTGCCTTTCCACAATTTTGGCCTCTTGGAAACTAGAA
AAATAAACATGTAGCTCATACACGAGATATATAACCTGTATGTAACATTCTTTCCGTGCC
AATGAAAATATGGCAATGTTTTCTGTTTGAGTTCATGCTTGACAGTTGACACAACGCAGC
AAATGGACACACATGTGAAAAGTAGTTTGGTAGCAAAAGACGTTATATCGCTCAAACTTA
TATTTAATAGATCCAATTTGTTGAAGGCATCATCAAGCGATGGCAACATGTGAAAGTACA
ATTGCACTGTACAACAACAAGGTTACAATGGTGTGCGACAAACAAGCAAGCATGATGATG
ACCCTGTATAAGACAGACCATGTGTATGTTCTGCATTTCTTGCGGTAGGGAATTGGGCAT
AAGCTCCAATGGCATGCCATGAAATCATGAACAATGAGACATCTTGGCACCTGTGGCGCA
GTTGAAGATGACAACATTGTAAAGGGGCATCATCTTAGTGGCTTCAGTCCCTGCAGAGAG
AGATATGTGGTTAAGATCTTCATTTGAGTAGCAAGCATGCAACGAATTGCAGAATTTGGG
ACTGAAATGTGGCTTTAGGGTTCAGCCAAGACTCAAACTTGGGATGTGATGGGGAATATG
TCAATACGGTTGCAGTAACACAAATAGACACATGATTTAGCTAGCATAAATTTTCAAATA
ATCTTATTTCTAAAAAATGCAATAAAATGGGAGATCATATCATGGCTGGTGATCTGGAAA
CTGAAGTCATAGTACAACTAAGCTTGGGTACCCTGCAACCTGGGTGATATAACTAGTTAT
TGCTGGAACTTGACTATGCAGTGCAGATTTTTGCTATGCGATCTGTATTGCTCTTTTCTC
AACGAACAGACATGTATAACCAGCTGGACACCAGTGCTTAGGCTGATTTGCAGGAGGAAT
ACCTTGGAGGCTCGCAGTTCATTTGCAGCTGCTCGCAGAGAATCATCTGATAGAATTAAC
CTTGACAGGGCACCAGTGCTTAGGCTGCATTATGTCAAGTAGTTCAACATATTGTATAGA
AGATGGTTTCAGAAAACCAAATGGAGTGAACATGTTGTAAACTAGCACCCATTTCTGATA
ACATATTATTTTTTTTACACTTGCCAAAAAAGACTTGAAAGTCATGCATTACCCTAGAAC
TTTCGCTGCCTCTGATACAGAACCTTCAACAGCAAATAGAAGATCTAATAAAGCTTGCAT
TCCCTGCTCACCAAAAGAAGAGAACATTGGGAACGGAGGCATTCAAATTGGCACCACTGA
GCATGCGATAAAAACACACCCAGCATATTTAAGGTAAGAAGAGAAGCATACTGGTGAAAA
TTTTGGGTTATTTGGGCCAATTTGATTGCCAACGTCCTTTGATCGAATAGTAGACTTCAG
TGGCAATATCTGAAGAAGTTCAACTGGAGGAGTGTAGTTATCAAGGTTTATCGGCCTCCT
GACTGATAAGATGTGAACGACCAAAATGTTACTAACATGGAAATTGAAAATGAATGATGT
AAACATAACCCGACCATTCTTGCTTGGTGTAAATTATAAGTGCATGGTGATCAAGATAAA
ACAATTATTGAAACAAGGTTGCCGCCTTGGGGTTATTTGCAACTAACATTACAAGTTCTG
AGCCATTTAGATCATAAAGTCGTGGTATTGAGTATGCATGATATTACTTAAACATTTACT
GAGCTAAAACATGCATAACTTGAAGCACAACAGATTTACCTTTGAGAGCAATCAGGGTCC
GAAGCCGAGATAAAGCAGATGATCGATTCTTATGTTGTGACCTATCCTCCACAGCCTGTG
GGGAAGCATGGTAAGATAAACTATCACGCAAAGGAGTGGAGAAAGAGCTAGTTCTACCAC
ATAAGATGGCTGACATGAAGGAAAAATATATATTAAGAATCAGATATTTGGTTGGTTTGA
ATTTTGAAGTTCAATGTGATGACCGTATGAATTCAGCGGGGAACCGATCAAACACGAACA
TGGCAAGCATCGCATGGAATGTTCATTTAAGACGGTTAGTGCAAGATGTTGTTTGGGTTC
AAAGACATCGATGAAGGTTGCGGCGGTACTAACTGAAACAATGATAGATTGATCTTTGTT
AGTACAGCAATAAAAATTTCTGCCCGCCATGATGGGTACATATATTGTTGGTTGATGCTG
TGGACACACTATTAACCGTTATGTTAATTGACTTCAAGCATGAATCTCTCAATTAGGCAA
TGCGCCTCCAAAGCTCTACTGGCAATGGTGTGAATGTTATACAAAGTGCCAAGCATTTGA
GATGAGAGCCAACATCCGTCAAGCACTGGACTGGACATCACGGCTAAATTAACCACTCTG
TTTTGGGCAGCAAACTCGCAGCCCAACTGGACAATGAATACTGACCTGAGCGACGATGCC
GGTGGGATGGTGGCGGAGCCGGACGGCGGACTCGCGCTTGTTGCGGTGCTGGCCGCCGGG
GCCGGAGGACTTGAACGTGCCCATGTCGCACTGCGCCATGAGCTCGTCGTCGGTCATCCC
CAGGTAGTTCTCGTACCCTCCCTTGTCATCCTCCCCCTCTCCGGCGTCACCGCCGCTGGG
GCCGTGGGAGCTGGTGGACGCGGCGGAGGCAGAGAAGGAGAGCGAGGGGAAGCGGAGCTG
GGGGGCGGCGGCGTTGCTGCGGAGCCTCAGGTGGAGGCGCGGGGCGGCGGACGGGGAGTG
GAGAGGGGAGCAGCAGCGGGCGGCTGTCCGGAGGAGGAGGGCCCGCGCGGCCATCGCGCC
ACCGGAGCGGCGGAGGAGAGGAAGGAAGGAAGATGGGTTGGATGCGGCGGCGCGGATTTT
GGGTCGTCTACGGCCGGACGGGATTTCTTTGGTGGGTTTAGTTTCGGCCGAGTTTCGCCA
ATTGGTGGGCTTCGCCGTGCGGCCCGTTCGCGCCGTCAGGCCCAGACTTGTGAGGAGGGA
TCCTGTAATTCGGTGCTGTTTTGCAACACAAGCAAAGAGAGACAGCAGGGGGGAAAAAAG
ATCACCCAACTTCTTTATCTTTACTTCTTTATCTTTACCTACTAATAAAGCAAATAGTGC
TTCTTCCATACGTCATCCAAATTGCTCTTAAAATTAACTAAAATTACCCACCAATGCCAC
CTATAAGTCATAAAAAACGTTTTAAATAGGAAAATATCCGGCATGGGCCGGCTTATGTAG
GCACCTCCTATATTACGGTCTGGGCGTTGGAAAAAGATGCAGCACTTCTGTTTGGGCCGG
CCCATGCGTGGGCGCCTGTTTTTTTAGTTTAGTTTTTTTATTTTTCTTTTCAGTTCCATT
TTGTTTTTGTATTTTAAATAATTTAGAACTTCAAACAACTTTT