Contig Data
morexGenes
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Map Locations of contig_36829 (5475 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map locationNo map location




Predicted Genes from contig_36829

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_51036 1 842 bp MLOC_51036.1 Available Available LOC_Os03g55560.2, FRAME:-2, EVALUE:2e-64, 13103.m06044 protein STE_MEKK_ste11_MAP3K.15 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed
MLOC_51035 1 1743 bp MLOC_51035.1 Available Available LOC_Os12g39850.1, FRAME:+3, EVALUE:7e-40, 13112.m04139 protein helix-loop-helix DNA-binding domain containing protein





CDS Structure of MLOC_51036






CDS Structure of MLOC_51035






Contig Sequence (5475 bp)

>contig_36829 5475 assembly3_WGSMorex_rbca.fasta
GAGCTGAACTTGTTCGACAAATTACGAGGCACGGATTAACTAGCGTTCAGTCTCACAGGC
CCACACGAATTCAGCACAGTTTCAGGCCATTTCCCCGGTCAGAGCCACTTCCGCCGATGT
TCCTATGTTTCCGTCGTTGTCAGCTGTCACAAGAAAGTTCTCAGTGTCTCACCCATTATG
CTCAATTTTCCTCTTCGAGATTGTTGAATTTGCATAATACTACTACTACTATTGTTCTTT
CTTGAGACATCTGACAATTTGCTGACCACATCAGCAATTCCCCAGCTTGCACCTAGCACT
TGCATCCTGAGCTGTGCAAGAAACAAATTTGAGCTCGCCTCAACGGCCATATATACAAGC
ACGCACGTACACATCATCAGCCACTTGCGTGCATGCTCCATAGCTAGCCCCTACGCCGCA
GTGCAGCGCCGCACCATTCGCCTCGATCGCTTGGACAGCACTACCAACTCGTTGCACAAC
ACAATGTCGCGGTCGCACGAGGCCGCGCGGTGGTCGCCGTACCACGCGCCGGACGAGGAG
GAGTCGGAGATCGTGGCGCAGTTCCTGACGGCTCCGTACCCGTGCTTCGACGGCGGCTGC
TGCAGCTACGACTTCCTCGGCGAGCCCGACGTGTCGCTCGGGATCAACACGCTCTCCTAC
TGCGGCAGCGGGTCCAGCAGCTCCACCATCGACCTCAACCTCTCCAGGGAGGAGGGGAGG
ATCAGCAAGCGTGCCACCCCTTCGCCCGCCGGCCTCGTGCAAGGCGGCTACCGCAATGGC
GACGGTGCCGCGACGGCGAAGCGGAAGGCCGGCGGAGATAAGGGAGGGGATCTCGGACGG
CACAAGAAGAAGGCTCGTGCTGCAGATCACAAGGCATGGCATGATAACGCAGCGTAATCC
GGGCCATAGCTTCAGAGTTTATTTGCCGTAACGTGGCGTGGCTGATTCAGTTTGGCCATG
ATCATGATCATGCAGGGGGGAAAGCCTGTAACATCCAAGATGGCGCAGCAGAGCAGCAGC
TACTGCTCGGACAAGGAGTCCGATTGCTCCCAGGGAAACCGCGGCGAGGAGGCCAACGTC
GGAGTCGGCTGCACCGTGAAAGCTCGGGCCGGCCGCGGACCGGGGAGCGACCCCCAGAGC
TTGTATGCAAAGGTGAGCTGAATGCATGTGCATGTGCAGCCCCGCGGGTCAATTCAATGT
GACCGTTTCAGTGGATTGGTTCAGAGTTTTGTTCTGTCCAATACAGAGAAGAAGGGAGAA
GATCAACGACAAGCTCCGGGTTTTGCAGAAGCTGGTGCCCAACGGAACCAAAGTGAGTCG
GTCCTCTTTTGCCTACTCTATCTATGAAGCAAACTCCTTTTCAAAAAAAAATCTATGAAG
CAAACTGAACTGCAGATTGAGCTAGTTATTGGCAGTAGTACTTTCTGACTGCTGTGAAAT
TTCTTCACAGGTGGATCTCAGCACTATGCTGGAGGAGGCAGTCCTGTACGTCAAGTTCTT
GCAGCTACAGATCAAGGTAAGCCCAAATGACATGGTTGAATTAGACCTTCTTTCCCCTAG
GAACTCTGTGTGTGATCGTGATGTGTCTTACCAGAAATTTTGTTCATGATCAGGTTCTCA
GTTCTGACGAGATGTGGATGTACGCGCCGCTCGCTTACAGCGGCATGAGCTTAGGAATCG
ATATGAGGATCACCCCTCAGTGATGAACCTTTTCTTTTAACATGAATCCATGATGAACTT
GACTCACTTGATTTCCATCTCAACGACGCCAAAACTGAACATTCTGAAAGAGGGTGAATT
ATTAACAACGACCCTTGCTTACAGAATTTCTGTACCCAAGGATTTGCAATCTTCCTTTGC
AAGAAGCCAAGGAGAACCAATCTTTCGGTCACTCCGGCATGTCTCCACATATCATGATCA
AATTCACAAATGCAAACGAGGCTTTGGTCTTCACAGGTCCTGCACTTTTGTAAATCAGCA
AAATGCAAGTCTTTTTCAGTAGAGCACGCCATGTTTTTGTAGGAGCTGCAGAAGACACGC
ATTATGTGAGTGATATTAATGTCAGAGTAGACTTTGTATTTTCTCCGGTTGATTATTGAT
CATGGAAGGAGAGGAATAATACTACTAGTGAGACAAAATGTAAATTCAACAATATCTCGT
AATGTAGCAGGATCAAGCACCAGATCTTCCTCTGGCTAATCTTGCACAACAGGCTCAACT
CAAGAAGCATGCTAGAACACAAAGGTTTCATCATTCTTGACTATACTTGTGCTCTTTGTA
TTGAAAATGTGGAAGAATCCCCAATTCACCTATTCTGGGACTGTACCTTTTCTCTGAAAT
GCTGGCAAATGATCATACCAAACAAGAGAAAGGGTATTTCAGGGTATGATGAGGTCATAT
TGGCATATAATCAGCTGCCCTCTCCAATTGCCATGGACATTATCATTTCAGGGTGCTGGA
ATATTTGGATGCAGAGGAATGACCAAAAATTTCAGAAATATCACCCCAGCTCCTCAGTCT
TGGAAACACAGATTCAAGAATGACCTCCAACTGCTTGAGCACAGAATTAACTCTCGGGAG
TTGAAATGACAAGATCCCTTGATCTTGTCATCATAGCTTAAATATTATCTCCCATACTCT
CGATGCTGCCTCGAACTGGAATTGGATAGATGCTTTTTCTTTTACTCCTTTTTCTTCTTC
TTTTTTTTCCTTTTGTAATCATAGTGTAAATATTCTATCTCATCAAGATCCGACGGAGAT
GTGTGTGTGATGGTGTGACGCTTTGGGCCATCTGGACATGTGGTATGCAAGGCGGAAGGT
GATACACGAGGAAGTATTTCAGAGCCCTCTAGTGCGCATGCTTCTGTGCAGAATTTCTAT
CGGAGCTACAATCGGCAAGCACGGAAAGGGTCTCGGCTGCGGCGCGGTCGCACGGATTAC
CATTACCAACCCCCAGGAGGGTTTTGTGAAGCTGAATGTTGATGTTGCAGTCTGGAAGAA
TGGACGGATGGGCAATAGCTGGGAGCCTCGGCCTTGGTGCTTCAGGGAGTTGACGTGAAG
CTGTGACATTGGCGAGTGGTTTGAACCTGACTATGTAATGCGTGGTGACAGACTCTGCTT
GTCTGTACGTAGTTTCAAACCTACAGGGAGATGACCTGTGGTCAGGGTCAGGTGATTCTG
CAGCGAGGCTCGGGCGCAAGAGCCTTTCCGTCTGTGCAATTTCGCCACGAGATAAGGGAT
TGCAACGAGAAAGCACATTGTCTTTGCATGGACGCAGCTTCAGTGACTTGATCAAGCCAA
ATCTCACCGTAAATGCATATTGCCGCTGAGGGACATGTTTGGCTACATGTTTGGCTTCAT
TATCGCCTGAGGGCATGTACAATGCATAGCCCTAGTGTGATGCCCCGTATGTCATGTAGG
ATCGGATGTCAGAAAAAGTAGGTTTGGATAAAGAAGCGGGATCTTATGCAGTAAACGAAT
GCTTGAAGATAAAAGATGTGGCCAGATGTAAAAAGTTAAAAAAGTTAGAGTGAAAAGTAG
AGATGCATGTGTATTAGAATCTTTATTTTTTATTCTTTGATGAGGCACCTTGATGGTAGC
TTGCATTGGAGAGAAAAAGTCAATATAGATGCCTCAAGCTATTTTTTATCATGAGGCATA
TGTATCCATATGCCACCATTATACATTGCCCTGATGAGGCATCTGTATCCCGGCTGTTGT
AGCCGTGTCTATAAGTTGCAGACTGTAACCTGCCTCCTTGTATGGACAACTAAAAAAAAT
CACTGTCAATAGAAATGGAAGAGAAAAGACTCTGCCATCTAAAATAAAAGCAGTATTACT
GGGCATGGCAATCTGGAGACTACATGAAGAACGCATGTTCTACAGAGACACAGATTTGCC
TGGAGCTTTACATACACTGCAAGTAGCCCATCGGATGATGATAAATAAATAAGCTCATCC
GTCTAGGCAGAATAACCAGCGGGAGCAACAAAAGCACACGCATGGACCTCTTTACCACGA
TCAAATGGGCAATTTCACCACCACCCAAAAATACACCGTACATTCCAGTTTTGTACCAGA
GAGCGCTCGCCCACAAACACACAAATTGTCTACCTTGATCTCCTGCTGCCAATTCACGCA
TATTATTACTCGAGACCCCACCAAAAATCATCAAAAATGATTACATCGAGGCATGATTAC
AGCATGAACACCACACAGGCTACAACTACAACCCTAATGTCCTATGTGCCAGCAACAATC
AGGAACATCAGCTACACCTACAGCTAACCCTAAACAATATGCTACAAAGGGATCACCACA
TTTCCCCCGAAAATAAGCATACACTCGTTTCCCGTTGCGACCATTACTGTGGAGACGTTC
TTTACATTGGTACTTTACACGACTGTTTGCCAATCCATCTTTAATACGAAAACATATTTA
ATGATTCCTTTCCATTAGGCTTCGGTAGTGGACTGGGCTGAGGGTACCCGATTGAAAAAT
GCATACTGTTCGGTGTGTTATGAGCTGCAGAACCAGAACTAGACTTGTAACTCATGGGTG
GAGGGGACAAGCTATGAGTATCCAAGCTGGTTGGGGCTTTCGGACGATGACCCAATGACC
CGGAACATCTAGAGCTGCTTGTTTCACTGGTCGGAAAAGGCAATAAAATAATAATAAGGT
CAAGATCAGTAATAGTGCAAACCTTCCATGAACAGATCAAACATCAAATTACTGAAAGAG
AAGTGTGAAAAAAGTACACACCCATTTGTATTTGTCTGTTTCCCTCTCACACAAGACTCG
GTCTTCCAGGACTTCTTTTCTCTTGAGCAGTGTCCAGCATCCTGGCATTAACATTCAAAG
TCATGAATGTCCACGCAAATATCGAAACTCAAGTGGATACATTAACTGAGGGAAGCTTAC
TGGGGATTTATTTCCTGCAGGAGAGTGTACAGAAACGTGCTGGGTGCAGTGATTTGAATT
TTGGATGAATGGGTGTTCAAGCAGCTTGCTTGCTGTAGGTCTCTCTGACGGGATTCTCTT
GAAGCAGCCTTTCAGAAAATCCTTCCCTTCTGATGATAAATTATCTGGAATTGGTGGGTC
TTTATTCAACACCTTAAACATTGCAGCAGGCTGTTGCACCACAGAAAAGCAGATTCCATG
CTTCAGAATTCCAAGACAGGCAAGGGAAATACCCAAATGTTGACATACTCCCTCCGTTTT
TATTTAGTCCGCGTACTAACTTTGAGTGAAGTCGAACTTCATAAAGTTTGACCAAGTTCA
TAGAAAATAATATGAACATTTACAGCAAAATATCTATAAAAGGACAGACCCAGTGCATAG
AAGCTCCCACACAAGGTGGGGTCTGGGGAGGGATTATAGGAACCTAGTCTTACCCCTGCT
ACAGTGCAATGCAGAGAGGCTGGTTCGAACCCAGGACCTCTTGGCACAAGTGGGGAGTAC
TTCACCACTGCGCCA