morexGenes - Barley RNA-seq Database

Contig contig_36827
Source Contig contig_36827
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_36827 (10679 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_36827

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_51029	1	938 bp	MLOC_51029.1	Available	Available	None
MLOC_51028	2	3413 bp	MLOC_51028.2	Available	Available	LOC_Os08g34900.1, FRAME:+2, EVALUE:0.0, 13108.m03652 protein pectinesterase, putative, expressed
CDS Structure of MLOC_51029

CDS Structure of MLOC_51028

Contig Sequence (10679 bp)

>contig_36827 10679 assembly3_WGSMorex_rbca.fasta
GTAAGAGACTGACCGGTGGGCCATATATGTCAGAAAGAGCATCTATATGTAGAAATACAG
GATCTGCAAAATACGACCTGTATCTTGATACGTATTTACAAAAAATTTGAAACCTGGCAC
CAACTTGTGAATACGGCCCCAATTATGGCACTCTCTTGCAATTAACTCTCCATCCGGGGC
AGAGGCCGCTGTCCACCCTCGACCCGTTCCTGACGGAGCCAGTGCTCAGCCCCCGAACCA
GCTGCCGGGCTGACTAGCGGGTCTAAATTTTTTCCTTTATATACACATTTAGTTTTACAA
TAGAACATTTATATACAAAACGTCTACTATATTCTTTCTTTTATATTTTAAGATTATTTT
GTAACTACCAATTCAACTATCATTTTACAGTAATTTAGTGAATAAATTCTTCACTTTAAT
AGTTTAGATGCAGTTAGACGACGACATATATTCAGTTAACTACACATGCACGGCCACATA
TATTCAGTTAACTGCAGTTGGACAGTCATTCCCTTGCTAATGTTCTCTCTACACACCCGT
GCGCTGCTATCACAGCGCTAGGGCCGCGTGGACGGTAGATCCCGCACCCCGCAGCGGCTC
TTGCTGGATCCTGTGTGCGGCGACCTTGACACGGAGACGGTAGGTGCGCTTGTGCATGGC
GGAGGTCACTGGATCCATGATCCATCTCTCCTCCGAGCACGACGACCTCCCCTGAGCGCA
GCGGCGGCGTCCCTCCCTCGCGCGGCCGCGGTGGCCGTCCCCTGAGCACGGTTACTCCCA
AAGTATGGAGGCAGCGGCCCTCCCCGAGTGCGGCAAACCTCCCATGAGCGTGCGAGCGAC
TCAATCGAGCCCGACAACGGAGAGACCCACCCCCTCTCTCCGAGAATCAAAGGTACACAC
CTTGATCCAATGGGGTTGTGCAGCACGATGGTGTCCTGGCGATGGTGGCGCGCCTTTGTC
TTGGTGGGATGGAGAAATCTGGCTAGCGGTTGAGCTTTGGACGACGCCTTCATATCGTCC
ATGTGTGGACGTCGTCGAGGCTGATTTGGACGATGTGTATATTTGCACGTCCATGTAGAC
ATGTTATTGGACAACATTTTAAAGTCTCATCGTGCAAAACGGGTATACACGTTAGTTTAG
ATGTGATGTTCAAGATGCTCTTAGAGTATCTCGGCAGCCACTTTAAGTGTTTTAGGGCTG
CCCTATAGTGTTTTAGGGCAGCACAACGCCGGCTGCTTTTCTAGCAGACTAAGATAGGGT
AGTGCAGTGCTCCGACGGCTGCCCTATAAACTGAGGCGACACAAAAAAATTTGAACAAAA
TTTAATTAGATTCAAATGGTTCGAACTACATTTCACGGTTACACATTCAAATATAGAAAT
TAACACCTAAATTCGACTAAAGTAACACCTAAATCTAAGCCTCCCAGTCGAAGTCGTCGA
GATCATCGTCGGTGGTGTCCCAAAAGCTCGAGCTCAGCTCCCACGAGTCGTCGTCCAACA
CGACGGTGGGTGGCGCAGTGCAGGGCAGCGCAGTGGACGGGCCCGCCTCATCGCCGCATG
CGCGCTTCTTCTTGGACGCGTAGAAGTCCATCTCCGCCTGTAGCAGCTCGGGGTGGTCGT
GGAGGAGCAGCGACATGCGGAGGCTGTCGATCTGCTCCGCGCGGCGGTTGAGGCGCTTGC
GACGCGCGTGCTGGTGCGTGGCACGGACGACGACCTACAATGGCGGCGGAAGAAACTCGG
CCGTCTTGCGCGTCTCCGCCGCGAAGTTCATCTCCGCGCGTCCGTCGCGTCATACGCGCG
CGCGGCCAGCTCCCCCGTGTCGAAGGTTCCCACCCACCAGCGGACGCCATCGACGGAGAT
CTCCGCAGCGTAGCGGCTAGAGAGGCGCAACCGTACGCCGAGGAAGCCGACGGAGCGGCC
AGAGGGGCGCAACCGTACGCCGAGGAAGCCGACGGAGCTCTTCGGGGCACGGCGCGGCGC
AAAGTTTCTCGACGGTGGGAAGTTTCTGGGTGACGGTTGGCTCCGCGGACGTGGGATTGG
AATTTGGGGCAGCCCCTTTGCTACCCTAAATATACATCACTTTGCTATAATATAGGGCAG
TGTCCTAATTTTTATTTTGACCTGTGACCTATTTAGGGCAGTCGTTGGAGGTCGTTTCTC
GCTGTTCCTTGCCCTATATAACAGTTTTTTTTACATCCCTACCCTATTTATGGCTGCTGT
TAGAGATGTTCTTAAGTCTTTAGACATTTTTTTTTAGATAAAAGAAGGATGTGAGTTTTT
CGTACGAGGTATGCTTACATTTCCGGCTGTTTTGCTAAATCGTGAGGGAATTGTGAGAGA
CTAAACAGAAGCCGGAAACTATTATTTTGTTTTCCCCAAACAAAACCAAGCTTCAAATAA
TTTCCCTCGAACGGAGCCGCACTACACAAAGTCTAGAAGATGGACTGACAGACCAAGGTG
GCCGTGATCCGCCGGGCACCGGGTTTGAAGGTTTCAAAATATGCTGCACCCTGAGACGCG
TTAGTGAGGCGTTCAATCCAGTCCAACGCAGCAACCCTGAGACAAGTTTGTTGCACGTGT
AATTTGGTGCACCAAATATGTTGCGCGCGATAGCGCTTTTCAACGTGTGACAAATTTTTT
TTAACGAATGTACTGTTTTACAACGTCTGTTGAAGCTGTCCGACGTCAAAAAACGAATCT
TTTAACACCGAGAACATCTTTTAAACACCTGTTGAAGATGCTTTAAAAATATAAGGGGCA
CCGTATAACCCCGCTGCCTTTCTAGTTTATAATCAAAGTTAAAAATTAAAAACCGAGAAC
ACACCACATTATGGGATGAAGGGAGTAGGTGGAGTACTGGCCAGGTCAATACTTTAAAAG
ATTGACTGGCATATCACGGTACCCTGTTGCCCAGTTGGGCGCTGGCTCGAACATGCATAG
CAGGATTTATGTCACGCGGCGACGGGGGTTGGAACGATGGCTCTCACCTCTCAGCACAGT
CGCGTGCTCTAGCCTGCCCACGACATTGCGCGGGCCAGCCCGACGTCGACGACACAGAGA
CACAGCGCATCACATGCGACGCCCATCCACTTCGTTTTCAGGGGCTCTTCTTAACTTTCG
GCGGGTGTCGCGTGCCGCCTTACTACTGTCTACTGACACGACCGCGGTGGCAAAACAACG
TGTCGAACCGTTTCTGCAACGGCAACGTACCAGGATCAATGGAATGGATGGTCAGCCTGA
CTTACGTTTAGGTGAGGTCTAAGATGGTCTATGCAAAATCGTGCCTAGACTTTCCTGGTC
TACTCGGCTCTGAACCTTTGCGAATAAGACATGCGGTTCGATCACCAAACCGCATACAGT
ACTGAGTACTATATGTGCATTGTCTTTGGGAAGACAAAAACTATCAATGCTTAACGATTA
AGCAAGTAGAGTAATAGAAGAAAAATGGCAAGGAAATTCACGACGGCGGGAAAAGCAACG
GAAGCGGAGCGTCGGTCTGCTCTGCACCGTCGAAGAAAGAACCCACGGCAGTTCGAGTCG
AGTGTTGGCGACTCATATATAGTAGTACCACCCATCACTCGCCCTCGCAAGCAGAGCACG
CACTCGGCTCGACACTCCAGCTAGCAAGCAGCCAGTGCCGGCCATGGCGCCGACGTCTCC
GACCTCCGCGCCGCGTCTCCTCCTCGCGCTCTCCCTCAGCCTCCTCCTCCTCACCAGCGC
CCACCAGCTGACGGCGCCATCGCCGCCCGCCGGCATTTCGCCCGAGCTCGTGTCTACGCT
GCGCGAGGCGCTGGACGCGATCGAGGGGGTGGCGTCCGTCGTCTCGACCTTCCCCGTCGT
CGGCGGCGTCCTCGGAGGAGCCGACCGCCGGCTCTCCTCCGCCATCACCGACTGCCTCGA
CCTGCTCGACCTCTCCTCCGACGAGCTCTCGTGGTCCATGTCGGCCGCTTCGCCGTCGAC
CGCGGGCGCGGGGGCCGCCGGCCGCGTCGGCACGGGCGACGCGCACGCCGACCTCCGGGC
GTGGCTCAGCGGCGCGCTCGGCAACCAGGACACGTGCAAGGACGGCCTCGACGACACCGA
CTCCGTGCTCGGCTCGCTCGTGTCCACGGGCCTCCAGGCCGTCACGTCCCTGCTGGGCGA
CGGCCTCGGCCAGGTCGCCGCCGCCGGCGAGGAAGCCGCGTCGTCCGCGCGCACCAGTGG
TCACCGGGGCCGCGGCCTCGGCGAGGGGGCTCTGCACCCGCACTGGCTGGGCGCGAGGGA
GCGGCGGCTGCTGCAGATGCCGGTGGGTCCGGGTGGAATGCCGGTGGACGCGGTGGTGGC
GCAGGACGGGAGCGGCAACCACACGACGGTGCAGGCGGCCGTGGACGCGGCGCCGTCGGA
GCGCGAGGGCGGGCGGTACGTGATCTACGTGAAGCGGGGCGTGTACAGGGAGACGGTGGA
GGTGAAGAAGAAGAAGTGGAACGTGATGATGGTGGGCGACGGCATGGGCGCCACCGTCAT
CTCCGGCCGCCTGAACTACGTCGACGGCTACTCCACCTTCCGCACCGCCACCGTCGGTAA
GCGCTCTGCTCCATCCAGTCGGTCAAAGGTCAAATCGTAGCATGCACCATGCACTCGATG
GCATATCGCTCCCCCACACACCAGCCTATCTCTGCCATGCCATTGCTTTGCTAAGCTTGT
AGTAGTACTACAGTCGATCACCTGAGATCTTAGCTCGTGACCACCCCCACGAGATGCATG
TAGCTGGACTGGAGTAGCACGGTCAATGTGTCATCGATTGTACTGTCTGCGGCATACGAT
TCCGTTGCCGTGCACTCTGATGCATCAGTACATCGGGAGATGTTTTTTTGGCCGGAAATT
CCTTCTTGCAGTGATCGATCGCGGTAGCAACTCTTTTCGGACGAGCAACATGCATCTTTG
GGTGTCAGAGACGCGTACATGTCACTGTGTAGTTTTTTTTTGGTTTTTCTTTCTCCGGTG
CATATTGTTACCTGCCGCTACCTTGTGGTGCATGTGGTACATGCACTGGACTCCAGCTAC
CCACCCAGCGCCCAGTACACTGTTCCTCTAATCTTAGCCGTGGTGTGACAGTGTGCTCAT
TCAAGTCCTGACTCCTCTTCCTCACTGACACCTTCCCCGATCGACCACGCGCCTAGCTTG
AATACAGAACATGCAGCATGCATTAATAGAGCTAGGGGGCAGTTGCCCTTGCGATGCAGC
GACGAATTCAATGGACGATATCACCACATGTTGCACAGGTTGGACGGTTGGCCTTGGTTG
GTTGGCTCAACAAGTCAAAATACACGGCCCCTTGCCGAGCTCTCTACGCGTAGCACACTG
TTGTCCGTGAGACAGCAGGTCCTGCTAGTCACCATGCGGCGCGGTGCACGGCATGAAACC
TTCTCTTTTGCGACCATAGGTTGTATCGTGGCACTTCTAGCTAGGAGGACTAGTGGCGCC
GCACCGTGCTGATATACTTTTCCTGAGGGCCAAGCTGCCAAGCCACGAGACCTCGCATCG
TACCTTATGTAGACTGTGGTCGAACATGGGATGCAGGGCCGGGAGGGGAGGACGGTCGTT
TTCTCATTTTGCTTGCCGTCGGTCACACACTGTACCGGGGGAGAGATCACCGACAGATAC
TGCAGCAGTGATCCGGCTGGTGATAGCCGATCTTTTGCTTCTAGTCCGGGCGTCTGTCAT
CTTCACGGGCCTCTTTGATCGACGTAGCCGTACGTTCGTAAAGCTTCAGTTCAGTTCCAT
GCATGGCTTTATCGATCAGCAACTGATCGATCCATGATGTGTGCCAAACTCTGGTCGGTC
TGACGAGCACGTTATACTACTAGTACTAGCTACTGATTGTGGCTTGACCGACTTGGTTGA
ACGTCATTGTCCGGATCCAAATCATGCATGCTTCTGACCTCATCGCCCAATAATTACTGA
TTGAATCATGATTAACACTTGATATATGTTTCTGTGGCTGACGTGGTGTCGTGCATGCAT
GCATTGCAGCTGTGGTGGGCAAGGGGTTCATCGCGAGGGACATGACGTTCGAGAACACGG
CGGGGCCGGCCAAGCACCAGGCGGTGGCGCTGCGTTGCGACTCAGACCTCTCCGTCTTCT
ACCGGTGCGCCTTCGAGGGGCACCAGGACACGCTGTACGCGCACTCGCTCCGCCAGTTCT
ACCGCGACTGCCGCGTCGCCGGCACCGTCGACTTCGTCTTCGGCAACGCCGCCGCCGTGT
TCCAGAACTGCCTCCTCCTCGCCCGCGCCCCGCTGCCCGGCCAGAAGAACTCCGTCACGG
CCCAGGGCCGCTTCAACGCCTCCATGAACTCCGGCTTCGCCTTCCAGTTCTGCAACGTCT
CCGCGCATGACGACCTCCTTCGACAAGCCAACGGGGCCAACAAGACCACGGCGGCCACGC
AGACCTTCCTGGGGCGGCCGTGGAAGGCGTACTCGCGGGTGGTGTTCATGCAGTCGTACA
TCGGCGCCGTGGTGCGGCCGGAGGGGTGGCTCGCGTGGGACGCCAACCAGTCCACGCTCG
CCACGCTCTACTACGGGGAGTACATGAACACCGGGCCAGGCGCCGCCGGCGTCGGCGGCA
GGGTGAGATGGCCGGGATACCACCTGGCGATGAGCCCCGCGGAGGCCAGCAACTTCACCG
TCGCGCAGTTCATCGAGGGCAACATGTGGCTGCCGACCACGGGCGTCCGGTTCACGTCCG
GGCTGCTCGCGTCTTGATCGATCATCTCGCGAGTAGTCGCTTACTCGTCACATACGAGTA
GTAGAGTACTTAACTTGGGGATGGTTGTGGTTCTTGAATGGGACAGATTAAGGTCTGTGT
ATGAATGAAGTGGTGGGGACTTTCTTTGGTTGGTATGTACTTTGTTTTCTTGATCTCTGA
CAGTGCCATGCATCCGGAGCGCATACGACATCTGCGAGTTAGGTAGTGAAAAAGTTGCAT
TCAAATCGTGTACGTGCTATCTTAAGAATGCCACTCTGAGATCAGAGCAAAGGAAATAAG
AAAAAAGAACTTGCATTCTCTTAGTTAAAAGATGATCGCTTAACATCACCATGTCAGTAG
GATGATGCCTCTTTGAATTTATTTTAGATTTTCCGACGATATCCGTTATATGAAAGGATA
CGCTTCTTGTCGACGACAAGACACGTGTAATAACTTCGTCGATCTTAATATGTGAACCGG
TTCGGTATCTCAAAAATGTTTATAGAAATAAGGTGTGTGTACGTGCATTCATAGAGTTAT
ATATGTGCATGTACATAGGCATCTACGATTGTACTCTATAAAAATATAACAACACTATGT
CTCAATAGTCACTATACATTTTCAGAAATGTCTAGTTATTAAAGATAAGATTAAGAAATA
ACCATTGTACATCATAATTTTAGTGTCTTCTCTAGTTTACGTGACACGCTTAAGATAAAG
CAGTCACCGGCGGTGATGTTGAGGAGGGCTCAATATAGAAGACCTACATAAAGTGCTATT
GTTCATATTCAAAATACAAAGGAATAGATAGTCTTGGGGGAGGGCCGGGCCCCTGGGTGG
CGACCATTGAAGACGGTCTTATGAACCACTATGCTCTTTTTAAAAATAAAAAAAGTTTGT
AAAAAATCTGCTGCGCACGGGCATATCACACCCTCTCAAGGGTTTGGGGCGCGCCATGGA
AAACTACATGCCAATATCTCGCGCGTTTTCATACATCCTATTGGTATTCGTCATCATCAA
CCGGTTCTTCTTAGTAGAAGCCGACAATTCTTTGTGTCGACCTTGTGCCTGTGCTCACGC
CCATATCTCGATACGATATCAAATTTCCCTTTTTGATTCCTTCTCCTCCAAGTCCATGAC
CTGCACTACCAAGTCTTCTGTTTTGATCAACTCATCAATTTTCTCTCTCATTGATGTATC
TTCTCCTTCTATTGTGAGCATGTCCTTTGTCATACTCATTATATACCGGGTTGTCCCTTG
CTCGACCCGGGAGTAGGACTCATGCGCCTCCTCTCACCCTTGTCATCACCATCTTCAACC
TCCCAAGAAGGCAAAGTGATTGACCACAGTTTCTTTGGTGGAGCCTCATCATTCCTTGTC
TTCTGCTTCTCGTTGTGCTCAAGCAAGTTTCAAGAATGCCGAAACACAAAATTCTTGCCC
TTTACTTTGTCATTTGCTTGTACCTCTTTTGAGTGATCCCATCCTACAACATATAGTTGG
AAGCTTAGCATGTGTATTCAAATACGCACATGGCCCGGTCAATATTTTCAATGTTCCTAG
ACATGACACACACACATATTCATCATTGTGGCACCACTAGGAGGCATGTGCTTCACTTGA
TCCAAACAACTTGTTCATTGGTTGCAAGCCCAAAAAATGACGTTCCGAGGATTTGTGAGG
GACTTTAGTTAGTGTTGGAGCGTTCTATTCACAAATTTGTTGTAGTTTCCTCGACGTGTT
TCAAAAACATTGTATAGTTTCATCATTTCCGGTGACCATATGTTGAATATGATGCTCTCC
AATTCCAGGACCAAGGTATATCTTCATCACTCATGTAGTTTGCTTGCCTTGATCTCTTTT
TGGTTTTTGAGAAGTATCAAATGGGTCCATGTCTCTCGCGCACGCGCACGCACACGCACG
CACGCACACACACACACACACTCCCCCTTCCTCCCTCATCATATCCCTCGAAAGGCGAAA
GAGATAACTCAAGCGATATGGCCCGATTAAGATCAGCGGACTCCTCAAACCCAACTAAAT
CTTCGATCATGCTCATGTAAGTGGACACTGTCCTACTATCAAAAATAAAAGACACATCAC
TGCATCTGATGCACATCAGGATCCACATTCTCAAAAACCGACTGAACAAATCAAACTACA
CAAGGGGCAAGTTTTTTTAACTTATTGACATTGCATCGAACACCTAGTGGCATTTCAGGT
TGATCAATATCATGGGCGTTGTCCGGTGGACCTAAGGGGCATTGGGAGGACCGACATCAG
ACGGAGGTGCGAATGAAGCAGACATAGAGGCCGTCACGACCAACGCCTCCTTCATGTTCT
CATTTTTCATATTTTTCATGGGCAATGGGTGGTGTCACCCTTGCATGTCAACACCTAGGG
CAACCTAGATGACAGAGTAGGCGTTGGCGTTGGGTCAATGAGAGCTACAGGGCCACTGCT
CAACGTTATGCCTGCATCGTCACTACCCCAAGCCAAGCAGGTGTTTCCCTAGGTGGCAAG
ACTGCATGTGCGGAGATGGCTACAAGTGTGAGGAGCTTGTATATGCAAGGGAAGGGGTGG
CACTATTCATGACGAGGTTCATGGCGTCGTTGGGAGGGCAGCTTTGGTGAATATGATAGA
GTGGATTTTTCGCCCCTTAATTAGTTGTTGTGTTGTTGTTTATGAGAAAGGATTGACACT
TTTAGAGAATATGCGGTAGAGTATGTCAAGACACTTTCACCCAAAACGAGAGACGGTAGA
CCAATATGCTATTGGTTCATTGAAAATATCCTCATAAATACCTTATATAGTCTAGATTGT
TCTCTTTGCTAATACCTAATTATAAACTTGAAATAATTAATAAGATACTTCGTTATCATG
CACTTTAGAGGTCTCTGCCAATGTAGTTAAGATACACACACCACATATACATTTAATTAA
TGCTAGTGTCACACAATAAATAAAAAAGACAAGCGGAATTTCATCTCGCATTTAAGAAAA
AATGATTTAAACAAATTTTAAAGTCACCATGCATTTAAAATAATAACGAATGTAACATTT
TAACTCCATATAATATTTAAAACAATGTATTAGATCTTCTTATGATTTGGCAAATTGGCT
TGCAAAGGTGTAAAAGTTTAGCATAAATTGGACGATCATTTTTTCCATGCAATATATCAC
CGTCAATCCATATCAAAACTATGAGGCCCCGATTGGAATGTTGTTTTTCTACCACCCATG
TAATGTTTTACACTTGTATATTACTCATCTCTCGCAAATTCCGGTTGTAAAAAATTCTGG
CTGTAGCATGCGCTTGGCTCGGTTGTAATACAGTGTAATATTCAAACGGATCCCAAGCCA
TGGACGAGGAACTCGAGGACTAATCCACGGCATGTGCGACCGAACTGCAGCGTAGCTGCA
TTTTTCTTCTTCCCCGTCCATCCGTTGGACGCGTCATGGAGTTGCTGCCTCTCTACTTGA
TGCAGCCACACTCCCTAGAGTGCGAGCACCACCGCCACCGCTACACCCACCAGGCGTCCA
TGCACCCATCTCCATTGCTCGTGGCAAGCTCTAAAATGCCAAGCGCGGCCTGCAAAGCTC
CGGCCGACTGATAATCTGCGGAAAAGGTGCCAAGCAAGAGCATTCGTGACCATGCCCTGC
GACGACATGTGCGGCCACGCCTTGTCGTGCCCCGGCGGCGCCGCCTGCACGCAGGCACCG
TGACACCCAACCTCCCTGCAGCTTGTAGTAGCTTGCTTGCTCGAGGGGTCGTCGCTAAAT
CTAACATGTGTTCATGTGGGCAGGTGCGCCGGGAAGAAGCAGAGCGACGACGGTGGGGCG
TGTTGGAAATATGCCCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTAACCGGAAACAATAATACATGTGTG