morexGenes - Barley RNA-seq Database

Contig contig_368170
Source Contig contig_368170
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_368170 (9600 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_368170

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_51000	1	349 bp	MLOC_51000.1	Available	Available	None
MLOC_51001	1	960 bp	MLOC_51001.1	Available	Available	LOC_Os05g02390.1, FRAME:-3, EVALUE:1e-50, 13105.m00203 protein ZOS5-02 - C2H2 zinc finger protein, expressed
MLOC_51002	1	1926 bp	AK366607	Available	Available	None
CDS Structure of MLOC_51000

CDS Structure of MLOC_51001

CDS Structure of MLOC_51002

Contig Sequence (9600 bp)

>contig_368170 9600 assembly3_WGSMorex_rbca.fasta
CGCGCCTCTGGTGGCCGGCGCGGTCGTGGGCATGCCGCCGCCGCCTCCGCCCGCGGCCAT
GGCACGGTGGCGCCGCATGTGGCCACCGAGCGCCTGGCCGATGGCGAACTCCAGCCCGCA
GACGGAGCATCCGTGCAGCTTGGGCTTGAGGTCGCCGCCGTCGTCCAGCCGCGGCTTCTT
GTGGCTGGCCCGGTGGCCGCCCAGCGCCTGGAACGACGGGAACACACGGTCGCAGGTCTT
GCACACGAACACCCGCTCCGGGGCGCGGTGACCGCGCGCCGCCACCGGCATCGGCATGGG
CATCGCCTGCTCCCGCGACACGAGCAAGAGCATGCGTGTCATCTCCTTCTGCTCCAAAGC
AAACCGCTTCGTCATTGCTCTGAACCCAACTGATCGATCCCTCAAACTCTAAAGATGATG
ATGATGATGATGATGATGATGAAGAAGCAGCTGATGAAGAAGAAACGCATCAAGCCGCAG
CTGTATTTATAGGCCATTTGCACCATAAAACAAATCGCCCAGTAGTAGCTAGCCAGTAGT
GACACTTAATCTAGTATTATGTTTATCCGGTTAAAGAAATGCACAAGTTGGCCCTAGAGA
TAGACGAAGAGGGAAGCAACGGCGGCTTCGAGTATCCCCCTCGACGCCGCTGCTCGCCTC
AGATGCAATGCAAGCGGTTCGAGATCGAGCCGCTCTAGAGCGTCGCGAGCTCGACGCATC
CCTTGGATTATCAGAAGAAAAAAAATATGTAGCATGATGATGCACGTACGAAAATACCTG
TGCACGGATCAGTAGTTGAGCTCAGATCAACCAGAGGGGCTTGTTCAGGTTTGACCTCTG
CACATGACTCAAGAGGGCATTTTTATGTCCTCAAGGTCAACTGTTTCCTCTTCTGCAGAC
CTGTCTTGTTTTGGAGAGACTGAAGGTTTCAAGAGCAGAATCTTTGAAATGTATGGTAGG
AAGGACATCAACAAGTGCACTTCATATCAGAAAGCAAAAAACAAAACAAAAAAGGATCAG
TTGAGAACTCAGATGAGATTATATATGACATGCATGGTACTTCGTGTCGAAACTTCTTAC
TATTTCCTTTTCTTTTTTTTGTTTTTTGTAGATTATGACGACACGGTACTTTTGTGTCGA
TTAAGATCCCATAATTTTCTTTCCTTGGGATAGATTGTTGTGGCCCACTGAATCCTGTAG
AGTTTACTTGTGTCAGTACTCGCATCAGTTTCGGTCATGGCTAGCTAGGCTGATTGGTGG
GGCAACCTGGAATTGCAATTAAATACACAGATGATCTATGAAGATAGCCCTTCTTAATGA
TGATTTTATGTATCAAACGTCTCATGCCTGCTCCAAATGCCACAAGAAACAGTAGTATCT
CTGGATCTCTTCTTATTAGTTTCCTTAATCTTTTCGCGAGGGGCATCTAACGCCTTTCGC
ACTTACTTGCAACGCCGGTATGGTGTCACAGATGGCTCTTCCAGTCAAAAGTAGCCAGGC
TAAGCTACCATCAAGCAGTGGCATCCGAGACTGGGCATTAAACAAATCCAACTCCGCATG
TTAAAATGAGCGGTTATCACCGATGATTGGTTCTCGGGGTTGCTTGCGTCCACACCGCAC
TGGCTTGATTGGACTGAACTGATCAACAATTGCTGCTTGATGTAAGCAAGAAAGTAGCCT
GGCTGAGCTGCGCAATCCTCCACTTTCTACTTTTCTAATTCGCAGCTTGTTTTGAATAGT
GGCATCCGTTGCTATTTCAGACAGTACTCGAGAGTTTGTGGCGTCTCGGTTTGTTCCACG
CAGTGGAGGTGTTTGATGGGCATCAAATGGAATCTTGCCCCTATTCACACTTCAGGGATG
AGAGGAGGAATTACTAAGCTAAATGATGAAGATTCTGTGCCATGGATCTCATCAGACTCT
TGGTTATGTGATGTCTAAACCTCTACGGACAGTAATTAGTACCTAAGGCTAAATTAAATA
GCCTCTGGGAAATCCATCATGTGCCTGCTTCTCAGTACTACTCCTACTACTTAAGATTCT
TCAGATCAGTAGTAGCACTACTAGTAGCACAAAGGTGACAACACACATTTCTTTCGAATC
TGTTCGCTGCGTCCCAAAAGAATTCGCAAAGGCCGGTTGGCAAGGTAGTCCTTTGTGAAC
CCTGAAGCAACATGATCCCTCGGTGCCGACGATACGCTCAAGTCGTCAGTATTATAAAAA
GGGCCAATTATTCTCTGCTCACCAACTGTCCAGTTGCTGTGGAAGATCAGATAACTTGCT
GAACACACACACACATTTGCATGAGAAACAGAAACGGCCAATTTGTGGTTTGCTACATAG
GTAGAGCTGCTACTATCTACAGGTTGCCGATGATTGGTGTTTCGAGGTTCGAGTTCTAGT
CGTACCGGCAACTTGAGCCCATTGGTTTAGTAAGTAATAATCATCACCCTGACAGCACAT
AACATGTTAACATAAGTTACTTCCTGTGTCCATCTCAGGTCTGAATCTAGCTTGGAGGTT
GCGCTGCATCTGCCGTTCCCCGCATAATTGAGCAAAGATACAACTTTGCTTCCCTCTCAG
AATAAACAACAAGAACAAACCCGCTATTTGCCGCATAAAATGGTCAAAAATAGAAGTTTG
CTTCTTGTTTTGCCTCAAGATTCAGCAACATCTGCATCAGAGATTCCCGAACCCCTATAT
CACCATATCAAACCTCTGCGGATTGTTTAAACTGGCACACGGTTTCGGTGCCCAATTGCT
CACAATTGCTTGTGTTGACTTGCTTGCTATGCTAGTTGAGTAGATATATCCGATTTCTTG
GTACCGCAGAACCAAAGCAAATGTTTGGTACCATCGTGGTAAAAAAAAAGAATGCTCGCT
TCGCAAAACATGCCGAGCACAACACATACCAATAGAATATAAATTGGAGAAACAATGTCA
ACCATCATTTCTGAAGGGGAAAAAAACTATAAAGGCCGGTAAGATCGACCGAGCGGTTCC
AGTTTTCTGCATCCACTTTCCGAGTAAGCAGTGTGCTGACCACCGAACGCGCACAAGAAT
CTGCCAGGGAAGGGGTCACTACTTTAGGTACTGCTGACTGATTCCAAAGGTTAGCCAGTA
CACAATATGATATGATATTAAGGCGTGCGTCACCGCCTGAGATCGCGGTTTGGGGCCTCG
AAGGGGCGGCATATTCCTTGATGACTCAGGGGGGCAGAGTTAGCACCACTAAAGCAACCC
CTTGCTACTTAAGAGCCAACACCCTCCTAATTTTATCAAGAATTGAGATATGAGGAATCA
GAGACAGCTATAATTCTCATTGATTTTCTCAAAATCTTGAAAAAATTGAACTGGACTGGC
AAATCAGAAAACAATGACCTGCTATAGGCTAGGCAAAGTAGTGCCCTCTTCAGAACCCTA
AGATACTGCCTAGCTTGTTGATTCAGTTCGCTTGCCACGTTCTATCCACTTCGATTATGT
GGCGCGCCTCTAATCTGCACCAAACACTATTTTTTTTTTAAAAAAACAAGTGTGGAGCTT
TAAAGCAGCCGTGAGTTGTATAATTGGAGCTAGTAGTGCTGTGATGCAGCTAAGCATCAC
TGCAATTGTTTTATCCATTGAAAGAGAAATATCTGATTAGCACAGCACACAGGTTAACAG
AGATGCATGACTTTTTTAGTAGAATCAGTCGTAAGCAAGGATTCCAAAACCGGATACAAG
AAAATACCGGTTAAATACAGGCGGTAACTAGGGTTTTTTTTCGTACCGGACAGTTTCAGC
AATCAAATTTAAACTCAAAATATGGAATTATTTTTTTGCCGTGTTGCTCAGAATAAAATT
CCAAATACCTTTTTTGGGGTTTGTTTGGTGCAACCGGTGCATCTGATCTTGGTTTCCCTA
TCAAGTAGTGTTTGGGACTTCTGAGATTAAATATACACACAACATATATCTGTCATGGTA
CTCCCCGTGGAGAAATATAAGAGCGTTTACAGAGGGAGTACAAATTTTTGAAGCATGGGA
AAAGGAACAAATCCAGTGCTAACAACGACAACATGCCAAATTCACTGCCCGATTTGGATT
AGCTACATGACATTTGCCTCTTTTGTTTCGTTTCTCGAGCTATGTTTTGAGTTGAGATTT
GGAATCTTGTAACACAGTAGAAGTATGTTTTTTCTACATCCCCAAATTTTTAAGAATTTC
CGAACAATTCTAAATAGGGTAATCAGGGTCGGGATGCACCAAATATGATCCAATTTTTAT
GTTTACGGTACCCCCAACACGCCCTCCGGGAAAGGATTATGTTCCTTTTCTTTCGATGGG
GTTAGGATCCATCTCACCAAATTGCAACATAGTGGGGTTATGTGCGGTATTTGCGAGGCG
CCAAAAGCCTCATATGTTAACAGAAACCACCTACCCAAGAAATAACCGAAGGTGAATTTT
GTTTCTTTGTTCTACTAATGGATAAAGAAGGCAATTGAAAGTTGACAAACACAAATCATT
GTCATGAACAACCTGTTGCTCTCATGAGTGACAAACTGGGTGAGCCAAACTTGCTTTTTG
AAAAAGAGTTAAGTCGCTGTCAGAGAAAAGAGCAGCAGCGGGTTGCTGCGTTCGAGGCTG
GAACTCACACAGTTCGAACCTCCCTCCCAGGCTAGGAGAGGGAGAGAGAGAGAGCACTTT
GCTTCTGCCTGGATTTTTCTAGGGTTCTTGTCGCCCTCTCCACGTAGGTCGCCACCGGTG
TGATGCGGACGGCACTGCATCAACTTGGAGTATCAGGCATAGTTAGTGCAATGCACCTAC
ATATACATACATGTCATCACACACATACACAAAGCAAAGTGGTCACTAGTGATTGATTCA
GTCAGCATCCAGTAGTAGTAAGCACATTTATGTTGACATCCTAGTGCTTTCTAAGATCTC
AGATTCTTGCATAGTATTTGTTTGGTTCTCCATTTGAGTCGACGAACCAATTCCATCTCC
AGTAACTTTTCCAGATATATCTCTGAAACCAAATGTTAGTTTAGTTCGCACAGGACCAAA
ATAATGGTTAGAACAGAAGATTTCGGATACTACGAATTATTCCTGGTATTAATAAGCTGT
AATACTAGCAAATACAGTGCACATAGATTGGTTATACTGGAGTCTGGAAATTTCATCACG
CAGCCAAACTTTTCCACCCATAAAGAATATACGACGCAGTCAAAATTTGATAAGGGTAAA
TGGAAGATACAAGATTGCTCAGTAAATTGTCTCTTGATCATGCTAGTGAGGAACCATTTC
CTCTCCTTCACAGGAGAAAATTCTTCGTGCGCCCGAACGAAGGGCACTAACTACCAAAAA
GCAACTGGTCCACCATGATCATTTGGCCATGTTGGGGCACTCTGAGGAGAGATGACCAGC
TATGCCGCATTCATAGCACGTCCTTCTCTTCTTTTTCTTTGGAGGCGCCGAGCTTGTGTC
GCCACTAGGTTTGTTCTCAACAGAAACAGCTGAAGGTTCCATGCTTGAGCCACCAACAGG
TTTAGCTTCCTCAGGACTAATCACAGTAGCCTTCTTGTTGGGGCAAGCTGATGAGAGATG
ACCGGAGATGCCACATTCATAACATTTCCTCCGCTTTGAAGGTGCTGAAGTTGATCCATC
GTCTATTTTATTCTGCTCAGAAGCCATGTAAGGTTCATACTTCGGTTCATCAAAAGGCTG
TGTGTAGTTAGAAACAACCTCAGGGGCACTTTTATTTGGGCAAGCAGACGACAGATGGCC
AGGAACGCCACATTCATAGCATGTCCGTCTCTTCTTCGATGCTGTTGTGGCTGACTCAGT
ATTGGCCTTATTTTCATCAACTATGACTTCAGGAGCACTTTTATTTGGGCAAGCAGATGA
TAGATGACCAGGAACGCCACATTCATAGCATGTCCGTCTCTTCTTCGACGATGTTGTGGC
TGAGTCGATATTGGCCTTATATTCATCAGCTATGACTTCAGAAGTCTTTTTGTTGGGGCA
AGCTGACGATATATGGCCAGGAACGCCACATTCATAACAAGTGCGCCTCTTCTTGGACAA
TGCTTCAGCTGAATCGACATTATCCTTATTTTCACTAGATATGACTTCAGAAACCTTCTT
ATTAGGGCAAGCAAAAGAGAGATGGCCAGGAGTGCCACATTCATAACATGTACGGATGCT
GTTCTTTGATGAATCTGAAGTTGCATTGTCATCTGGTTTCTGGTTTTCTTTCTTTGGAAC
AGCACATCTGATTCTGGCTGGTCTCCCCTTAATCACGTTCTGGTCAAGCTTCAGAGCAAT
AGCAAGAGATGTGCTATCAGAGAAATCAACATGTGCAAACCCTTTGAATTCACCTGTCTC
CTTGTCTGTTCCAAAACGGATGGATGAGATCTTGCAATCAGAAAAGAACTTCCTCAGATC
ATCCTCTGTTACGTCCCAAGCTAGGTTTCCAACATATGTCCTATTGTATCCCTCTATCAT
CTTTGGTGCAAAATCTTCCTTCTCATGGTTGGATTTGACCTTTTCGCGGTTAGCCTTGTA
AGGCTGGACTTTCAAAAGGAACCCTCCCCTGAGATTATTTAACAAAAATGCTGTCACTTA
TGAATCACAACTGAAACAAACAAGGGTAAACATTAAGGACATGTGCTTACATATCTGCAC
CATCAAGAGCCAATGCCCTTTTTGCGGCGGCGTCAGTCTGCACAAGAAAACTCTGTCAGG
CTCCAACTTCCAAACAACTCTAAAAGCACGCTGCTGATGAGACATGTGAATTATTCATGA
CTCCTGATAACAGATTAAGAGCATCTTGTGGTGGTACAAGCTGACTCCAATGGACTAAAA
TGAAACTAAATTGTACTCCCTCCTTCCCATTATCCAAGGCACCTAAGCTTTTCTAATTTT
TCCCAATTTGTAAGGTGTGCAAGGACTAAGGAAATCAGTTTTCCCTTTAATTGGCCATTC
CCTGGAAACCGATGGTGTAGTTTCCTGAAAAGGGGGGTCGCTAACTGGCATCTGCTTGCC
TGCAAAATGGCATCTGCTAATGGCTGTTAGAGAATATCGTTAGGGAACTGAACGTCTCCT
ATAACCGTGTGGTGCAACAACTAGGCTGTGCTAACTTCCGTGCCAAAAGTTTAGGCGCCT
TAGATAATGGGAAGGAGACGTTCATTGGTGCAAAATCTTACTTCTCATGGTTGTACCAGC
ACTGCTCAAAAGTTGTACCACAAGATTCAAGCTACAGGCATATTCTCCTAACAATGAGAA
TGACTGAAACATGCTGCTGATGAATCATGTGCGCTACCAAGCAGATTAAGAGCATCTTAT
GTTGGCATCAAGACGACTCCAATGGATTACAAAAAATTAAATGGTCGACGAGAGTTCTGC
TCAGAAGTTGTAGTAACATAAGACACAAGGGTACAGCACCACTTACCACCAAAAGACCTT
AAAGATGAATGCCCTAGAGGTTTTGGAAATAAAAACCAAAAAATTCTACACCAGAACAGT
GAAAAAGTCAGACTGCCATGCGTACACAGTTAGTTCAACCAAACGCCAGTGCCATCAAAC
CTTAAACATTCAGTACACTAAGAAGATGTCTTGGGGTGAATTAAACATGTCAGCATGAAC
AGGAACGCAAGACTAGAACAAAGGGTACTGTGTTGCAAAGCTGACCTTGAATGTGAGAAT
GGCAATACCCCTGAACTTCCCGGTGTCAGGAAAAGTCATGCAGTCCAGCGCAGTGATACT
TCCGCATCCTTCAAAGAAACTCCTAATGTCATCCTCAGATGAATAGTACGGGATGCCACC
AACATACACCTTCTTCATACTTTGCTCACTGAAACAATGAAGCAAAATATTAAACAGCTG
CCAACATCCTATAAGAACCTGATCTCCAGCCTGTCTACCGCACTCCTTAACAATTCAATA
AACATACAACCAGAAAGCAATAAATTTGTAATATCATTTCACAAAGAAACTTCCGGACCA
AACAGTTTTTTTGTGGAAGAAAAAAGCTCACAACAAAGTCTGATGAGCAAACAATTTCTG
ATATACTGTAAAGTTATTGCACTATTTGAGTCAACAGCAAAGCTAGACAGTCCAAGTCCG
AGCAACTCGTAAATATGCAAAAAGGCCCATCCCGCTATACCATTCTAAGTCACTAACTTG
CTGCGTTATTTTAATCCCTCTAATTATTTGCAGAAACAGTGTCTTGTCTTACATGCCTCT
ATTCTGTGACATCTTCAGTCCTCATATCTATCTAACGAGAAAGGAGGTACTCAAGAACCA
GAACATCTATCCTTTACAGCTTTAACTCACCTATCTCGCGGCACAATTGGATTGTCGGAT
ACACCTGCCTGGCCAGCCTCTTCTAACTTAATTTCCTTCACCTCTTCTGACTTAATTTTC
TCCGCCTCTCCTTCCACCTTCGTGACGTCTAGATTGTGTTCACTGAAACAAGAACAAAAG
TCATTACATAACCGATGTCAATACAAGGACCAGAACAGGTAAACACCACCGCCTCACACC
TCATTGAGATTCAGCATGCCAAAAACAACACTAGAAGTCAACTAAAGTGCCACTTCACAA
AATGTTAAACTGTTATCTTCCACCATGGAAGGCATACAAAACGTGTTTTTCTCAGATCAA
AGCCAAACTAGATGGTCAGATAGTTGCTTTCATACTACAGCATTTACAATGTTATGACTA
CCTCTGAATGATAAAGGTAAACAATCCAGACCTCACTAGAGCATTTACAATGACCCATCG
CCTATAATCACTGCACGGCTATTCTGAGCTCAACACATTTTATGAGCTCTACCAACATGT
TATGCAAACTATCGACGATCTTCTCTTTGCAGCAATGGCATCTTAACATCAACAGCTCAA
CACATTTCCTACTTACATAGTTACATGGCATGAACATGACAACAAATGAGGCATTCGAGA
ACAGAAGCACCAACCGTTCGGAGCGTCAACTCACCTGTCGTCTGCCACGGCAGGTTCGGC
GGCGGCCGCTTCCGCGTCCTGCTTCTCCGCCTCATCGTCGGACTTCTTGTTCGCCGCCGC
CTCGGCCTCCGTCAGCCTCCTGACCCTCCTCTTCTCCTTCTTCTCCTTCCTCCTCTCCTC
CCTCCGGCGCTCCACCTCCGCCTTCTGCGCTAATTCCGCCTCGTCCACCACCGCCGGCTC
CTCCAGGTCGCCAGCACCGTCCGCTTCCAGGCCCAGCTCCCCCGGCTCTCCGTCAGACTT
CTTCTTGCCCGCGGCCGCCTCCGCCTCCGCCAGCTTCCTCGCCCTCAACTTCTCCTTCTT
CTTCTTCCGCTTCTCCTTGTCCTCCTTCCTCCTCTCCTTCCTCCGCCGCTCCGCCTCCGC
CTCGTCCACGGCCGGCTCCTCCGTGGCCGCAACGACCACCGCCGGCTCCTCCAGGCCCTC
CGCATCCACCTCATGGTCCTCCGCACCCACCTCCGGCGGGGGTGGTTTCTTCGGGGACGC
CTTCTTGTTCTTGGCGCGGCGGGGGGCCGGGCGCTTCGGGCCGGGCCGGGTCGATGGCGC
CGCGCGCTCGCGTATCTCCCCAGCGCCGCCGCCCCACATGCCCCAGCACTCCTCGTCGTA