morexGenes - Barley RNA-seq Database

Contig contig_367640

Source Contig contig_367640

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_367640 (3672 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location	No map location

Predicted Genes from contig_367640

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_50918	1	547 bp	MLOC_50918.1	Available	Available	None
MLOC_50917	3	602 bp	MLOC_50917.1	Available	Available	LOC_Os05g02050.1, FRAME:+3, EVALUE:1e-23, 13105.m00158 protein mitochondrial import inner membrane translocase subunit Tim, putative

CDS Structure of MLOC_50918

CDS Structure of MLOC_50917

Contig Sequence (3672 bp)

>contig_367640 3672 assembly3_WGSMorex_rbca.fasta
GCCGCCGCCGCCGCCGCCGCCGGAGGCGGAGGCAGCGAGGAGGAGGAGGACCGGGCCCGC
CTGGCCGCCATCGCCGACAGACTCCAGGCCCGAGACTCGTACGCGCTCCGCCCCTCCCTC
CCGCCTCTCTCGATTAGCTCGTCTAAAAGATGGCGTCTTGCAGGGTCCGGCTGTACACCT
GGCTCTCGCACCGGTGCTTCTCCGACTGCGTCACCACCTTCTACCGCAAGACGCTGGGCA
AGCGCGAGGGGGACTGCGTCCGCGCCTGCGTCCGCAAGTACACGCTCGCCACCAACGCCT
CCGCCGCCCGCTTCAACAAGCTCGCCGACCCCTCCGCCGCCGCCGCCGACGACGAGGACG
GCTGATTCGTGCGACCCTGTGCTCCGATTTTTTGCCTGCTCTGGTTAGTCTTCTGCAGTC
TGAGTTCCGATGATGTAGCGCTTGTGATGCCTGAAGAAACACCAGTAGTGACAGAGTAGA
ACGAGCCACGGATTCTGAATTTCTGATGCGCTTCGATTGATTGCCGCTGTATCGGACCAC
ACCACGGATTCGGAACTTGGGTGGATGCAGTCCCCCCTCGATGGTTTCCTTGCTTTACAA
ACTTAATTAATGCTTCACTGAATCTTTCACTGAATGTTATGCATTTCCTTGTATGGCTGG
AATCGGTTGCTTCCATGTGTCAGTTCAGAATTCAGAATGTGCATTGATGAAAACCTGAAT
TCTTGGAGCCATTTCATGCTTTATTCACTGCATCAAGTTTAGGATTTCCCCCTTTTATTT
TGTCTCATAGCCTGGCATAAGGTCAAATCAACAGTGATCCGTGATGTTGAATTGAAGCTT
GTCTAGATTCAATTTCCTCTTCAAAAGTTGACTGCATCTTTTGCCGTCATATGCCAATCA
TGAATCTCCATGTCACATGATAAATAGATCGTTTACAACAATTTGTCAACAACTCAACAT
TACTCTGATGGACAGTATCCAGGACAGTATCATTGCAAACTTTCACTGAATGCCATGCAT
TTCATTGTCTGGTTGGAATCTGTTGGTTCCATGTGTCAATCCAGAATTCAGGATGTTTGA
TGTAAAACCTGAATTCTTGGTGCCAATTCATGGTTCATTAACTGCATACCATAGTCTGGT
ATAAGATCAAATCAACAATGATCCATGATGTTGATTTGAAGCTTGTCTAGATTCGATTTC
TACTTCAAAATTGCACTGCGTCTTTTGCCATGATATGCCAAACTTGAATCTCCATGTCAC
ATGATAAATACATTGTTTTCGTTTGCAGCAATTTGTCAACAACCCAACTTCACTGCAATC
AAGCGCATGTCCTTTTGTTTCCATACCCTGTTACAACCAGTAGTCAACTCTGAATTTATG
ATATATCTCTGCCTCAAGTGATAGGATCTGAACTTCTCTTCAGAATAAGATATTAGAGAA
ACTTCAGATGTTGAGACAACAAAAAAATGATTTGTTCATGAAATATGGTTCATCAGAGTA
ATGTAGCAAAGGGCAAATGGATCTGATGTGAATACAACCATGTTACCAGACAAAAAATGT
AGTAGAACCTGTTGTATTCAGTGATTGCACATCTTCAATCTGTATAATTTACATATGACA
CAGAAAATGGGGTCCTCCAAAATTTATTCACTCTAAACAGTAAGCATACTGATTGTTCTG
TTTAATGATTTTTTGGGTGCCAGTCTCATTCCTATATGGAATGAATGCAGGGTACTTGCA
TCTAAAATGAAGGTCTAATTATCCAGGTTAAGTCGCTCCAGGTTCTTGTTGCAGTCTCAT
CAACTCTCAGCGTCAGTATCCAGGACAGTATCATCGCCAATTCACAGTAGTCCGATGAGA
GATTTAGATTTTGTTATAAGCTTGATGATGTTCCTCGTCGTTGGCTTATCACTGTTGAAC
AGAGACCTCTGAGCTGATACTCTGCATGTACGCACACAAACCATAATCCTATGAGACCGT
CCATCAACTCTGATCCAGAAGTTTTACGTTTCTGAGAAAATACAACCGTTCAATTGTGTC
ATTTGCCCCTTCTTTACATCGGATTAGATGATTTGCCCTGCTTTTCTGTTTTCCTTTTGA
TAATGTGTCCTTTTTAATTACTGCAGTCCTTTTTGATTTTTAATCCCTATTTTTGCCATG
CGAAAAGTCTGTATTGCCCATGTGGCAAATTTTGAATGCTTTACGGACCATTCTGTGTTG
GACTGTTGGTCTTGGTTGGATCAACCGGTTCATCACCTTTCTCCTGTTCTTCTCTCTTTC
TATCTTCGTATTGATGTGACAAACCTTCTGGAGGAGGTCGATGAGGGCACCCTTGCCCGC
ATCTTGATGTCTGCTCTTGCTGCTGCCAGAGGCGCGGCAGTGTCCGTTGCAGCACAGTGA
TCCAACGGAGAAGGCTGTCAAGAGACGGCTCATGCTGCAGCTCGGTGATAACATAACATG
GGTGGTAGACGGGCAATTTAACATCAACTGGCAAGTGACAGACCGGGTATGTGAGCCAAC
CAGTGCCAATAATTGTAAATACTTTACTTCTCAACCAAAACACTTCATAGCGTTCTTTCC
CTGGTTTCGGTGTTTATTTATACCACTGCATGCAAGAACTGTGAAAATGTGCAAGATGTC
CTAGTTTCTTTTCTGCACTTGTAGCTAGCTTGAGATTGTGTAAAGAGTAGGATAGGTAAT
ATGCACAAACCAAGGACCCCATATGACACTAATTAGTAGGCTTGGGAGGCATTAGGACAA
CCATTTGTAGCAGCGAATGAATATGTTGAGGATCGGTCATCACTATTTCTCGAGATATGT
AAGGGTGAGAATAGACCTTTGGACGGCGTTGTCTCGCTTGTGTTGGCATGCATGGACTAT
CTACGCCGAATGCCAGGAGATTGATTTTGCTTTCCTGGTTGTTTGGTTGTTTGGTGTGCT
GCGACGTGTAGCGATATGCATGGCGTTCAGGACACGGATATACCAGTTGTATTGGCTGTT
TCTCCCATGTAGATTGTCCCATGCTGGATTTAGCCTAATCGGTGAGGAGTTGACATGCGA
GGTCGCTCCCGCACGACATGGATGTTAGGGTTGTATATTACTGTTTATCAGTGAGGGAAA
CAATCTTTGTGCCTCCGAGGTCAGAACTAAGCATGGATATGTTCAACTGTCTGCAAACGA
GATGAAAATATTTGGTGAGTAGATTCATCATTGCGTTGGTTTGGCCGGACATACGTACGT
GACACTAGCAGAAATATAGGCTTCAGACCCAGTTCGTTTGGGCCACTAGCCCAGTTCAGG
AACCGGACCAGAAAAGTGGGACTAATGCTAGCCCTGGTTCGTCCTGAACCGGCGCTAATG
GTCCTCCACGTGGCGGGGCTGAGAGCGAGGGGGAGGGGTATTAGTCCCGCTTCTTGTTAC
TAACCGGGGCTATTATTTCGCTGCCTTTTTTAGCACTTTTTATGGTTTAGGGTTTTGCAT
TAAATTGCATGGGGACTATTTTGCTGCCTTTATTTGTTTGCTATTTTCGCATTTATTTGT
TTTGAACACTTTTTAATTTGTGTTTTGCACTAAATTAGATGATACATACACAACGATAAA
GGAACAACTATATTGCACANNNTCGTCACGAATATATTACACCATCTCCTCCGTCGTGCT
TTGTCGAACATA