Contig Data
morexGenes
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Map Locations of contig_359389 (4070 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_359389

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_50390 1 653 bp AK363253 Available Available None
MLOC_50391 1 580 bp None Available Available None
MLOC_50389 1 978 bp None Available Available LOC_Os05g43530.1, FRAME:+1, EVALUE:4e-41, 13105.m04585 protein CSLC7 - cellulose synthase-like family C, expressed





CDS Structure of MLOC_50390






CDS Structure of MLOC_50391






CDS Structure of MLOC_50389






Contig Sequence (4070 bp)

>contig_359389 4070 assembly3_WGSMorex_rbca.fasta
CGCGCGCGCTTCTACGGCTGCCTCAGGCTCTTCGTCGTGCTCTCCATGCTGCTGCTCGCC
GTCGAGGTCGCTGCCTACCTCCAGGGCTGGCACCTTGAGATGCCCGAGATGCCCGAGATG
CCGGGCCAGCTCGCCATGGACGGCCTCCTCGCCGTCGACGGGCTCGCAGCCGCTGCCTAC
GCGGGATGGATGCGCGTCCGCCTCCAGTACATCGCGCCGCCGCTGCAGTTCCTCACCAAC
GCCTGCGTCGTGCTCTTCATGATCCAGAGCGTCGACCGCCTCGTCCTCTGCCTCGGCTGC
CTCTGGATCAAGCTCAGGGGCATCAAGCCCGTGCCCATCGCCGCCGACAAGGACGACGTC
GAGGCCGGCGACGAAGACTTCCCCATGGTCCTCGTGCAGATGCCCATGTGCAACGAGCGA
GAGGTAAGCCCCAAGCCCAAGCTCACACTCCAATCATTCTGCTTCTTGCTTGCGTATCCA
TCCATCTTGAGCTGCAATTGGAGCTCCATGATTCAAGTAGGGCAGCCTAAATTCCAGCTA
GAGTAGGGGAAGAAGATGCTGCCGTTTCAGGATTCGGGTTAAGCGTAGACTGCATTTTGT
TCGGATCTTTGCCCCGGGCTCTCCAATCACGACTCTGATGCTCGATGACGTTGATGTGTT
CGTACTTCACATGAATCTCACAACAACACCACCACCAACAACAACAACAGATTCCGTGAT
TTGCTTTGCAAAAGGCCGAATTTGGTTTGCGGTTGGGATTCATATCACACTAACTTTCTT
TTAAGGCACACTTATTATTCCAAATCTCGGACTAGAAGTTTGTCGTCACCGGTCACAAGA
TAATAATAATTGGGAAGCCATGTGATTGATGGTCAAAGTGTCCAACTATAGCGCACTTAA
TTTGGGGCCAAGCTAAGAAACGATAAAACTCAACCACTAGTTCACTTCATTTGGGAAATC
TTATGGGTAATTTGCTCTTGTAAAAAGTTGAAGTAGTCCGGTTCAATTAAGTTATTTCAT
TTGGATGTCTGCAGGTCTACCAGCAATCCATTGGCGCAATTTGCAACCTGGACTGGCCAA
GGTCAAACTTCTTGGTGCAGGTGCTGGATGATTCCGATGATGCTACCACTTCCGCGCTCA
TCAAGGAGGAGGTTGAGAAATGGCAGCGGGAGGGCGTGCGCATAGTATACAGGCACCGGG
TGATCCGTGACGGCTACAAGGCCGGAAACCTCAAATCAGCAATGAACTGCAGCTATGTGA
AGGACTATGAATATGTTGTCATCTTCGATGCCGATTTCCAGCCACAGGCGGATTTCCTGA
AGCGCGCCATGCCCCATTTCAAGGTTTGACTCGACTGAGCAATTCTTAGTGTTGTAGTTT
GTTACGCTGCTTCATTTATCTGACAATTGGTCCTATATCGGTTATGTTCTTTTCTGACAA
ATTCAATATGCAACCTCCAGGGGAAGGACGATGTTGGGTTGGTTCAGGCAAGATGGTCTT
TCGTGAACAACGATGAGAACTTGTTGACCAGACTACAGAACGTAAACCTGTGCTTCCACT
TCGAGGTGGAGCAGCAAGTGAACGGAGCGTTTCTCAACTTCTTTGGGTTCAACGGGACTG
CCGGAGTGTGGAGAATCAAGGCACTTGAGGATTCCGGTGGTTGGATGGAGCGCACGACGG
TCGAAGACATGGACATTGCTGTCCGAGCACATCTCAAGGGATGGAAGTTCCTCTACCTGA
ATGATGTTGAGGTACTGGCACAATATCTCTGTCGCTTATGCAGACTTTACATTGGCATTG
GATTACAGAGTAATAATTTAACTTGAGTAACTTTCTTTTCAGTGTCAATGTGAGTTGCCA
GAATCGTATGAAGCATACAGAAAGCAGCAGCACAGGTGGCACTCAGGTCCCATGCAGCTG
TTTAGACTCTGCTTTGTGGACATCATAAAATCCAAGGTATGAGCCATTTTCTGATGGCAC
ATTGTGGAAATTAAAATGTCCAGTCATGTTTGTATATTCTGTAAAATGTGGTTTATTTGC
ATGAGGCCAGCAGTCTTCGGCAACATTTTTGGATTGTATAGGATGTACAAGATATACTAA
TTGTGAAGAGGCAACATTTTTTCTTTTTCTCTGTATAACTGTTAGCAAATTTTAGTTAAT
TTACATTCACCCTCTTATACTCAAGCAGTCATTAATTTCCACACAAAAAAACTTTTTTCA
GTTAACTTGAAGTAGAATTATTGTCATACCCTACCACACAATTCATGCCAGCACATCTTT
AGTTTTTATATTTGTCCCCTGATTTGTATGCTTGCGTCATTTTGTTGTGTGTTGTCTAAT
ACATGTATGGATAATTGGCCTAATGACGGTTCTTGCTTTGTGCTGCAGATTGGATTCTGG
AAGAAGTGCAACCTGATATTCCTATTCTTCCTCCTCCGCAAGCTCATCCTGCCATTCTAC
TCCTTCACCCTCTTCTGCGTGATCCTTCCCATGACAATGTTCGTTCCAGAGGCCGAACTT
CCAGCATGGGTCGTATGCTACATTCCAGCAGCAATGTCCATCATGAGCATCCTCCCATCC
CCAAAGTCCTTCCCGTTCATCGTCCCGTACCTCCTCTTCGAGAACACCATGTCCGTGACC
AAGTTCAACGCCATGATCTCGGGCCTGTTCCAGCTCGGGAGCGCCTACGAGTGGGTGGTC
ACCAAGAAGTCGGGCCGTTCCTCCGAGGGCGACCTCGTGGCCCTCGTCGAGAAGCACACC
GTGCAGCAGCAGCAGAGAGTCGGGTCGGCGCCGGACCTCGCAGGGCTGGCCAAGGACTCG
TCGCTTCCCAAAAAGGATGCCAAGAAGAAGCAGAAGCACAACAGGATCTACCGGAAGGAG
CTGGCGCTGTCGTTCCTCCTGCTGACGGCGGCGGCGCGCAGCGTGCTGTCGGCCCAGGGC
ATCCACTTCTACTTCCTCCTGTTCCAGGGCGTCTCGTTCCTGGTCATGGGCCTCGACCTG
ATCGGCGAGCAAGTGGAGTGATGCCATGGCGGCAGCGACGACCGGAGGTTCTCTTTATTT
TTTTCAGTCTGAAGATACTACTACTTTGCGAGCATCAAAGGAGCCCTCTGTAAAGGGAGG
CAACGTTTGGTGCTCGGTGCTTACAGGAGGAAGCTCGCTCGCTCCATCGATCTCTCTGAT
CCCTGCTGCTCCGGGGGTCCGAGGCATACAACTGAACTGTGGAGAATGTAGATAGATATA
GCTTTGGATCATCATCATCATCATCAAAATGCCTGGGAGATGGTTTTATTCTTTCAGGTC
GTCGAAATTCTTTTGTAAGAAACAAGAAAATCTAAACCCTTTGGACGGGTGGGTGCCTAG
ATGACGGGGTGGGTGGTCCTTTGTTCCTTGTTGACAGACTTTACCTTCAAATGAAGATAA
TACTTGTTTTCGCCTTGTACTTTTTGCCACGACCAATTGATTATCAGAGATACATGTTCA
GTTCTTCAACCTCTTGTCTCTCTTTTTTCTTCTTCTTCTTCTTCTACATATGCTTGCATC
CTTTGGATTTTACCGGTATCTTGTAAGTGTGAGGAACCTGGAAAGATTAACTGGCAGCTT
CACAAATGGAGGCTGCTGAATGAATGAATGGATGGAGGGATGGGACCTTGTTACATGCTG
TCTTTGGCAGTTTGGCCCTGTCATGTGCACTGGCATGGGACATATTCGTTGCTTGTTTGT
TTGTTTGATCCATGCGTGTCGCCATCGTTGAGAAGGACGTGTACCCCCGGGCTTGTCCCT
TGGCTTAGCTTGAGAGAGCAGTCCATGTGGAGGCGAGCAGGGACTCACAGTACTAGTAGG
CTTCTTGGACTGTTGCCTGACGTTGCATGTTCCTGCCTGGCTTATCTTCCAACCGGCGAA
TTGGCATGTGAGCAACTCTAGTAGACCTTGTATAATTGCAACTCCGAGCCAGCAGCACGG
GCAAAAGCCTATCCGCCTCCGTCGGAGGAAGGAAATCCTCCGGTCCGACGACGGTCCCGG
CACCGCCTCGGCCTCCGGCTCCATCTTCACCGACGGGAGCTCTTCGAGCT