morexGenes - Barley RNA-seq Database

Contig contig_358985
Source Contig contig_358985
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_358985 (6496 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_358985

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_50357	1	1585 bp	MLOC_50357.1	Available	Available	LOC_Os07g09050.1, FRAME:+3, EVALUE:0.0, 13107.m00907 protein exostosin family protein, putative, expressed
CDS Structure of MLOC_50357

Contig Sequence (6496 bp)

>contig_358985 6496 assembly3_WGSMorex_rbca.fasta
CATAACATCCTTCTTTACTTCCATATTTTTTTTCAGATTTTTTTGAAACCGAAAAGTTTG
AATTTTGAATTATTCAAAAAATTTGGCCTTCATGGAGGCCGAGCTCCAAACGTCCGTACT
CAGCCAAGTGCTGGCTATAAGCAGTCTTATAGCCCATCTTATAGCTAGCTTGTACAATAG
TTAGCTATAATAAATTACTACTTTATCATATATGACCCACCTTTCATTCTCACAAAGCAC
TTAGGAGCACGTGCAAGAGCTGGTTCTTCACGAAGAGCCCGTTTTCCTTCTCTCTCCTCT
TCTCTCTCATCCAACTCAATAAAAATATAATATTTTAATTTTTACAGTCTGACTGTACCT
TATCGTACTTGCTCTAATAGTTTTCTCTCGCATTTCTTCTATCTTCCTCACAAAACACGA
CCACGGCCACAGCTGCACACAGCAGCTAGCGAGACCACCGTGCGGCTGACTGCTGGCTGA
CTGATGTCGATCGAGCTCCATGCCGGTGATGGCGAGAGATCGGCCACACATTGACGGCGA
GAGAGCTGCGGCGGCGATCTAGCGCTTGCGCTGGTCTGCCCATATGTCTAATATCGTTTC
GTTTCTTACTCCCGTTTGGACCGCAATAATTGTTTTCTATTACTACAAGAAATGAACTGC
CGCGTACAAAATTCCCATGGATACATCAAAGAAGGAAGATTCATTAATTCCACTTTCTTC
ATTTTTTTGAGGGAGAGAACGACACGTCGAGATATTCTTGCCGTGGTGCTAGCAGGTTCA
AGTTACAAGGAAACACATTTTCGTCCCTTCCCTTGCATGGGCTTGAACTCAAGTCAGGCA
CTACGTTATGGGAATACTTCCAGACTTGTTAGAGGACCACACAACTAGTCTAGGAGTTTC
AACGGTTTTGTTCCAAATCGGCTAGAACTTGCCCTCACGCTATTTTTTGCACAAGCTTGA
AAAACAACAACTCAAATTGAATGCCGAATGGGATCCCATGCCGAATTGATTCCTCCGCAA
TGTTGGCTGGTTGCAAGGATGATCGGTGTTACTTATGCACTGGGTATTGCTCCCGAAAGT
GGAAACTTCTAATTGAGATGATGAGATCCATATATGTTTTGTTTGTGCGTGATATCGAGC
TGTCAATGCGTTTTCAATCTTTAGAAATTAAAGTACTGTATAGTATGTTTCGGACCAGCT
AAGTTACACTTCTGTTTGTATAGAGCATGATTAATTTAACAACAATGTTACAACTATACT
GGACCTAGCTTTGTTATTGTTGCTCCTGTTATAACATGCATATTGATGTTGCAAAATGCT
TTGAACTGGGCTCATCGAGTTACTTACATCTATGTATATTGTGTTGCAGGAAAGTGGATT
TGACGATGCCCCTAGCCCCGATGGCACGGTTGAAGTAAGGGTGCCGCTAATGCAGAGGAG
TGTGGATGTAAAACTGGAGAGGTTGGAACTTAGTCTCGCGAAAGCCCGTTTAGTGATAAG
GGAAGCTATCCAAAACAAGGACACGCGTCCTCCACTAACCGACAGGGATTATGTGCCGGT
TGGACCGGTGTATAGGAATGCAAATGCATTTCACAGGTACGCAAATTGCTTTCGCGTCTA
AACACTTTACCATTAGTCATTAGGGTATGAAGTGGCTAAGGAGTAGTATTGGAAAGATTA
ATCTGACATGGGCGTTGTTTGCTCATTTTGGCACGTAGGAGCTACTTGGAGATGGAAAAG
TTGTTCAAGGTATACGTGTACGAAGAAGGCGAGCCACCGGTGTTCCACGACGGTCCGTGC
CGCAGCATATACTCATCGGAGGGCAGATTCATATTTGCCATGGAGATGGAGAACCGGATG
CGCACGAGGGACCCCGAGCTTGCCCATGTCTTCTTCCTTCCCTTCAGCGTCGTCAAGATG
GTGAAGATGATCTACGAGCCGAGTTCGCGTGAAATGGAGCCGCTGCGCCGGACTGTCTCG
GACTACATTGACGTTCTCTCGACCAAGTACCCGTACTGGAACAGGAGCCTTGGTGCGGAC
CATTTCATGCTCTCCTGCCACGATTGGGTAAGCAACATCACTGCAGCATTTCAGGCGTTT
GTCCAAGACATGCAACCTTGGCAGGTGTATGTACTTCAGTTTTGCCATGCTCAGGTGTGC
TAACCATACCATGCATGGATCGATGATTGTGTGTCGCAGGGGCCATATGTGTCGTCGGCG
AACGACCGTCTCTTCTCCAACTCCATCCGCGTGCTGTGCAACGCCAACACCTCGGAGGGC
TTCAACCCTTCGAAGGACGTGTCGCTGCCGGAGATCAACCTCCGGACCGACATCGTTGAA
GATCAGGTTGGCGGGCCGTCAGCATCACGCCGCCCCATCTTGGCCTTCTTCGCTGGCGGT
GACCATGGCCCCGTTCGTCCACTGCTCCTGCAACACTGGAAGGGCAAGGATGCAGACGTG
CAGGTGAGCGAGTACCTGTCCCGGGGCGTGTCCTACATCAACGTGATGCGGCGGAGCAAG
TTCTGCCTGTGCCCCAGCGGGTACGAGGTGGCCAGCCCGAGGGTGGTGGAGGCCATCTAC
TTGGAGTGCGTGCCGGTGATCATCGGCGACGACTACGTGCTGCCCTTCAGCGACGTGCTC
AACTGGCCCGCCTTCTCGGTGCGGGTCGCCGTGGCGGACATACCCAACCTCAAGACCATC
CTCGCCGGCGTGTCTCCGCGGCAGTACATACGAATGCAGCGCCGGGTGAGGACCGTGCGC
CGGCACTTCATGGTCAACGGCCCGCCGCGCCGGTTCGACATCTTCCACATGATCCTGCAC
TCCATCTGGCTCAGGAGGCTCAACATCAGGCTCCATGGACAAGACTGAGATATTCTTGGG
TTTCCCTTCTTTTAGGGAGCGGTCTAACAAGCAGTCAACTGGTTTGTTTGTGTCCAGGCC
AAATTTCCTGTCCAGTTGTGATTTGACACATTTCAACCGACCTAGTTTTGCATGGTAAAT
ATTTTTGTTTGGTTTGGATAAATGTTTTACGTAATGTGTTACATGGACCAATCAAATTAA
AGTCTGGAGGATGAAGCGCCCCCACCTCCTGGAAATCAGGGGGGCAAACTTAATTAGTTA
GGAGACTTACGTTAGTTTCCGTAAAGCTTACGTAGATGCAGCATTTTCGTTTAGGGAGTG
TTTAATAACCAGTCAACTGGTTTTGCTTGGTAAAAAATTGTTAGAACTTGGAGTAAGGTG
GGGTATTGGGGAATGGAAAATCAGTTCAAATTTGTCAGGATAAATGGGTTGCTGATAAAA
TCCTTGGTCTTCTGTCACCCATCCTGCCTTTGCCAGTTTACCAAACTGTGGATGCGATAT
TCAACCCTACTACTTGTCAATGGGAAGATATGGGAAGATATTACGCTTAAGGCTTTCTTT
GCACTTACCAAACAAGATTTTGTCAATTCTTTTGGTCATAGTAAGGCTTCGCTATCTGGC
CTTGTAAGAGGAATAGAGGGGAAATTGATGGAATAATTATTGTATTGCATGAGCCTCTTG
GCCACATTCTGAAGTACTCCCTCCGTCCCAAAATAAATGTCTCGACTTTGTATTACCTCT
AGTACAAAGTTGTACTTAGCTTGAGACACTCATTTTAGGATGGAGGGAGTACAAGACAAG
GTAGAAACAAATGATATGCTATCTATGTTTCCTAACTAAGCATGATGCTTAACATTCGTT
GCAGTCACAACAGTAGCGAGGCAGAAGGTAAGACAATAATAGTGAGGTAGACGGTAAGAC
TGGAGAAGAATTTGAAGCCTACGGACCCTGCCCCCCTCCCCCATCCATTCACATATAATC
GTAACGGTTGATGCATCGTACATGCCGTGGCTGAAGTGGAAACCGATCAGATTGTTGAAG
CAATGTTGTAGTCTTTGTGCCGTTGTCGAGGTAGAAGAGAGTATAGGATGATGTATCCGT
GGTAGAGGTAGCCGTGCGAGGGATGCCATGGTTGATGTAATATGCATAATGGTATCAAGG
TAGTGGTGCGCCGGGAAAAAGGCCGATGTTGATGAGGTCTCGCTTCGGGTTTTTCAAACC
TGAAGACACGTTGTGGATAAAGGCATGCGTCGGTGTTACAAGCACCACGCATGTGTAGAT
GGACAAAGTTGATGTTAACAAGGCGTGACACCAGGTTTGCCAGGCCTGAGGACACGTCAT
GGATGAAGGCACGCGTCGGTGTTGCTAGCACCGGGCATGTATAGATGGTGACCTGCACGA
GCTGTACGCCATGTCGAGGAGGCTATCAGAGAAGGACTTAACGACGGTTGCAACATCAAT
CGGTGTGGGGCTGATGTCGCCCATGATGATCGGAGTAGATGAAGTGGTCGGGAAAGGTGA
GGACGACACTTGCGATGAGTTGGAGCTGTACGAAGACGATGGGTTGGAGTGGTGGTGCAT
CTCGGGTAGGTGAGCGGCATGGAGAATAAGAATCGTGATGGCAACAGCTGCTAGGTTCGA
AGCGCGACGGTTGTGCTCGAGCTAGACGAGAAAGAACCCGACAGCGTGATGAAGACCGAA
TGCGGACGGGGAGCTAATTACATAGTAACTGACAACTAATTACTTGTAATTTGGTAATTA
AATATTTTTAAACTGGACAACAAGTCAACTAGAGCTCGGCCATGTGGTGAATAGTGTTTA
TTTTTGTTCTTTTGCCGTGCCTTAAACGCATGTACTATATTGTGAGTATGCGATTTCTAT
GTTGTACCCCTCTGTAACTAATATAAGAGTGTTTAGATAACTAAAATAGTGATTTAAACG
TTTTTATATTAGTTTATGGGGAAGTAGTTTCTCTCTGTTCATTATTTTACAATTGTTTTC
TTGCGCATGCATGCACTACATACTTCCAGCGAACATAATATACAAGGAAAAGTCAATCAC
TAGCTAGCTAGTTCTTGTGTGAATAGTCACTGGTACTATTTTGGTATTATTTTTATGCTC
ATGCTAGCGCATTTAGGGGGATTAGTAGCAGCCGCCGCATGGGAGTGCACAGGTAGAGCG
CCGCTACGTAGTAAGATCCATTACTAAATCAAATAAGAAAAGGAAAAAGGAAAACAAAAG
AAAATATTCATACGAATCTCCACGTAAGATCAATGATTTGCCTGTTTGCTGTTCGCGTGA
TGTTTGTGGTAGATGTGGGAACCATGGTCATCTGGTACCGATTTCCAACACTGTGCTTCC
TTGGGATTGTGTGGCTTCAATGTGTGGATTTCATGCTGTGGGGAAGGGATTCTTCTATAT
TCATGATCATAGCGTACCAAACCAGAACATTGATAGGAATAGATTCATTGTGATATTAGT
TGTAGAAGGGCATGCCTCTGGGAGGCAGTTAGATGAATTTTTTAATGCTTACATTAATAC
TAATTGGAGATGCTCTCCTATATCTATTGGACCTAATACCTTTGTGATGAGGTTCCCTTC
TTCCAGAGATGTGGACAAGGCTTGTTTTGCTCAGAGCATGAACATAAAAAGTTCTGGTGT
TGTTATTAACCTGAGAAAGTGGTCTGAATCTGTGGGTGCCAAGGGTGTTCTTAATGTAGC
TTGGGTCAATGTCAGTAACATACCTCTAGATAAAAGACATGAGAATAATATTGCATATGT
GGGATCTCTGGTTGGGGTCACGTTGGAGATTGATAAGGCGGCGATTAATAGGCCTGAATC
TGTGAGAATTAAGCTCCGATGCAGAGATGCAGAGGATATCCCTGCTTCTGCAGAGGGAGT
GCTAGGAGGACACTTCTATGACTTCTTCTTTTCTGTTGATAAGATCCTTGTGAAAAATCC
AACCTAGGAAAAAATAACCGTGCCACAAGAAACTGATGGAGGTACCTCACCTAAAAGGGC
TAGGTTTAATGATGATAAATGTCCAAAGGGACATATTGCCTCCTCATCTACTATGGGGGA
GTCTTCGGCTCCTTCAGGGACGGCTGGGGGAAGAAATGTGAAAAATATGATTATGACTCC
ATTAGAGGAGGTGGTGGAGGAAGAAAAAACACAACATGATAGTGAAGAGGTTCAATATGA
GGATGAGAGCGAGGAAGTGGGTAATGAGCTACTCATTGATACTATGGCTGAGGAAGCAGA
AAAAATCAAGCTAAAGGGGGGAGGAGAATGTGTATCATGCTACTGTTTCCTATGATAAAA
CTGTGGTGAACTCAATGCAAATTGTCCCCAGTTCTGTTTGTGGCAAAATCTTTTCATCTT
ACTTGGAAGCATGTGTGGGGGAACCTGTGGTGACTGAAATGGATCCTAGTGATTATTCCT
GTCAGCAAAAGATGCAGATTTATTCTGTGCAATCTCCTGGTACATCTAATGAAAATGTAG
GGGTGATTCCTGATGACCCACAAATATAGGGGATCTATCATAGTCCTTTNNNNNNNNNNN
NNNNNNNAACCCAACGAGGAGTAGAAGGATGTGACAAGTGGTTTTCANNAAGGTAATATC
TGCAAGCAGTGAAATT