morexGenes - Barley RNA-seq Database

Contig contig_358388

Source Contig contig_358388

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_358388 (2527 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012

Predicted Genes from contig_358388

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_50316	2	1615 bp	MLOC_50316.1	Available	Available	LOC_Os12g06910.1, FRAME:+3, EVALUE:1e-94, 13112.m00716 protein nucleolar protein family 6, putative, expressed

CDS Structure of MLOC_50316

Contig Sequence (2527 bp)

>contig_358388 2527 assembly3_WGSMorex_rbca.fasta
GAAGACGCCATGGGGGAGGGGGGGGGTGGCTTTGAGAGGGCTACCGTCGGGGAGTCTACG
ATGACGAGGCTGGTGGTGGCTAGGTCAGTCGCGCGGAGCGGGAGCAGGTGGGAGGGAGAG
TGGAGCCATCCTCCTTCTCATATGCCATTTCTTGTCGAATCAACTAGCGCGCGAGGCAGT
ACAGCGCGACGCTCACATGTGCGATGGAGCAAATGTTGTGCTGGCATCATGCATGGTCAC
AGTCACATGCACGTGGGGCTGATAGCTGAATCGGGTGGCTGAATCGGGTGGCACGCATAG
TGTTGCGAAGAATGACCGGAGAACATTAGTTCCATATTATTACAGTTCTTGTCAATGTAT
CTTCTATGGTATTTGTGCATGAGAAGTATCTATATGATAATTTCAGAAATTGCAGGAGAA
GCGGTGAAGAGAAATGTCATAATCTGGGGAAATGCCATATAAGGCTTTTACCGGAGAAGC
ATCTATGCTAATTGCTAGTCAATTACTGTTTCAGAACCAAAAGAGTCTATTTTATTCATT
CACTTTCTGTTCATTTAATCACAGGTTCTTAAAAGGATAGCTTCTTACGCTAAAAGCAGC
GCTGAACTGTTAACAAATCTTATCGTCTATGGTCAATCAGGCCAATATACATGGGAGGTA
AGGTTTTTCTGTCACTACTTGATCTGTTCACTGTCTCATTAGGTTTTGATTTTCTCACTC
GCTTTCATTTGCTATAGTGCCTCTTCCGAACACCTTTAAGCAATTATGACGCTGTTATAC
TCCTCCATAAAGAGAAGCTTTGCCGTCCTCACCATCTTCTTTTTCCTGCTGAGATTCCTA
ACGGTTAGTTCACATATTAATATTTGTTGCTAACTAGAAACAAGATGAAATTCAACTCGT
GTTATGTGTTCTTAATGCAAATAACTTCCGGAAAAACCTTGCAGGTAAGTTGGTAATCCA
GGGCAAACCAAGCAGTGATTTCCACCCTTATATGCCACTCAGTAGAAGTGTTGTGAGAAG
CTTGCATGACACAAGAGATAAACTTTTGGTGAATTTTGACCCTACCGCATACTTCTTGCG
AGACTTGAAGGTAAAATAGAAACTATCAAGGTTTGACTGCATAGAGATATGTTAATCCAT
TAAGTATGATAATCCAATTTGTGTACAGTGTGCATTCCCCATGACCTTCAAACTGTGGCA
CGATTCGATTGGTGGGGACGCAATTGGTCTTACATGGGAGAGCCCAAAGGTATTTTTCTC
ACTGACTGCTTGTGTTGTAGAAGACCGTTTCTTCACTTTAACCTTCCCACAAGATCCCAT
ATACTCAAATAGTATGCAGGATTAGGCTGTGTGACCCGCATCTGTTGCCAATAATTGTTT
TATCATGCCGAGCTTTTTAGGTTGTCGCATATCACAGGTATGTAAGTTGACTTGATTTTG
TGTTATTATGACAGAAGCGTACCAGAGATGAGGTTGATGAAGGCATGCCGGATCCAACGT
CTATACTCAAGGAGGTTGGAGATGTGGGTAAAGGGTTGGTGAGGAGTGTACATCTCCTGA
AAGCACCAAAGCTTGAGTAAGCTGTGCGTGAAGGAGTTCGCTGGTGCCCAGGAGAGGAGT
CCTGGCCGATTTTCTGCCAATGGTAAGAGAAAGCAACACCCAGACCGAGTGGGCAACATG
TTATCTTCAGCAAAGCAATGTATAAAGTGGTAATGATATCATGTGGTTGTAACTCCAATT
GGACGATCAAGTCAGCAAAAATCTCTATCCAATTTTTGACTCCCGAGTTCCAGAAAAGTA
TAGCGATGTAGTTCTGTTTCCTGGTCATTTCAACAGGAAGAAATCGGCTGCAACGCTGTG
TTGATTTGAGACAAGATGGAATCAAAATTGAGCAGCTACTAAACGTAGGGTTACATGAAA
GTTGCATTTGTCTGTATGCCAAGCGGAATTCTCATGTAAAATGTGTTATACTCGGAAATG
ACCTATTTCATTTGTCTTGTAAAATTCTTCTTTATATTGAGTGCCCTTTTGAAAGACGGT
AGATGCATCTCTCTGCAATTCTAGCCCACCTCACAAACTGCACATATGCAAGCTAAGGGC
TTGGGAATCGTAGCAAAGGCAGGTGAGATCTCAGCGGTCAACCGGGCCGAACTGCCATGC
CAATTCGTTGGGGCGAGCGCCGGTGTCTAAGACATGGGTTGATTGTATGTCACTTTGTCA
GACCCGAGTTCGATACTTGACTGAATTCAAGGTCTAAACTGTGAACAGTCACACCATCTC
AGGGAGTATTAAGAGTATTTGGGTTCAAGCCATGTGGGCTGATGGGAGGATCTCAGAACT
AATGTCGCCGTTCTTCAGAGAAATTAAGAAAACACTCTTTTCATACAGGATTTGGGAAGG
TTTTCATTTAAGATCTGGGAAGACAATTAGGGTTGGGCCAGTTCACTAGTAGAAAAAGGG
CATTTAGCCCCGGTTCAGTTGGGCCATTAGTCCCGGTTCGATTCCGAAGTAATTACACAT
AATAGAA