| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
| No map location |  |
No map location |
Predicted Genes from contig_355646
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_50162 |
12 |
6931 bp |
MLOC_50162.7 |
Not available |
Available |
LOC_Os03g28330.4, FRAME:-1, EVALUE:0.0, 13103.m03307 protein sucrose synthase, putative, expressed |
CDS Structure of MLOC_50162
Contig Sequence (9057 bp)
>contig_355646 9057 assembly3_WGSMorex_rbca.fasta
ATTTCACTATAAACTACATACGGATGTNNNNNNNNNTATTTTAGAGTGTACATTCACTCA
ATTTGCTTTGTATGTAGTCTCTTAGTGAAATCTTTAAAAGGTCTTATATTTTGAAACGGA
GGAAGTATAAGCTAGCTATAAAGTGGACTATAAGACTGCTTATAGCAAAGAGTTGGCTAT
ACTATTAACCATGCTCTAATTGGGCTCGAGTTTCTTCAAGGCCCAAACGTCCCATCTCCC
TCCTCCGGCTCTGCTCGGACGCGTCGGTGGATGGACGACGGCCGCCGCCGCCGGTTGGGA
GGGAGCGCTACGCCGGCGACCATGTCCCGGACCACCGCGCTGGAAGGACATAAGATCTCG
GCCTCCATCGCTGGAAGCGGAAACCTCGCCGCCGGCACCCGTCGCAAGGTCCGCACGGCT
CAATCTTGCCCTCATTCCCCTCCTCTTCCTATTACTTCGCGTGGTGGATCCAATCCTGGG
TAGCAGGTTTTGAAGGAAGAACTCGAATGGAAATCAGACATCTCATTCTCGGATCAATTT
CACTTCGTTGGTTTGCTGCTTGAGAACGGAAGCCAAACATTTGTGCTAGCTATGCAATAA
AATTGCGCTATCAGAAACTGAAGCAGAACAGCTGTTTTGTTAAATTGTTACGGTTCTTAT
TGTTTTTACCATCATCCTTTCCTTTAGCCACACAAATCATGTCCCTTTAGCCATTTCTGC
TGGTATGTTCAGTATGCTCTTTTGGCCACAGAAATCATATTATTAAGATGGCCTTGCTCA
CAGCCTGAGCTCAGTCAATCAGCTAAAAAACGGGTCACCAATTTCAGCTAAATTTTCTTA
TATAAATTGAAACTGGTCTTGTTGGGTTCATATGTACTGTATTAGACATCATTGGCATTC
ACATACCAACCAGTACCAAGTATAAGTCGAACATATATCAGCTCTTTATTGTCCCATAAA
GCGGCAAGACAAACCTTCCAGTAATCATAACAAAAAATAAAAAAGCTCAGCAGTCACAGC
AATTTTCTTGGCTGTTGAAGGAAGGATGTTACTGTTATTATTTCAGAAACGACACCAAGG
CCGTTTCTATTATTCAACGGTAACATCCGAGAAACACGACAAGCACCAGCCAACTGGGCG
GCACACACCACATTTTCCTCTGTCTCGACTCACTGACTCACTCCCACTACAAAATCAAAC
TAGCACACCAACTCGATCTTAAATCTTAAAAAGAGCAGAGCCTAGGAAGCAAACCAAGGC
ATTCTCAAATCTCAATCTTTGCAGAAATCCAGGTAACCCTTCTTCCAGCCAGGAGGTGGC
CAGATCACTTGCTCGAGGACTCTCCCTCGACAGCCAATGGAACGGTGCTGGCCATGGTGC
GGTACTTGAGGGCGTACAGCATCTCAAGGTAGCGGCGGGTCTCGCGCCTCTCGAGGTTGG
AGACGTACTTCCAGAACCCGTACACACCGGTGAGGGTCATCAGCCTCTCGGAGTAAAGCT
TCCAGGTGTATCTGAATAAGACATGTAAAATGACTGTTAGTCGCAGGAACCTAGTTATTA
TCAGAACTAACATCTATTGGATTTTCAGCTGCATACTTCTCCTCAATACGCTGAAGCCCT
CCCTGTGAGATCTTGGTCCAGTGGCTGGGGTCGACCTCGCACTTCTCAAAGAACTCGACA
AGCAGAGCGGAGGCCTTGTCGCCCTGGTAAGGGTCAATGTGGTAGCCGGACACACCGTTC
ACGATGATCTCAGCAGGACCACCATATGCAGTTGCAAAGGTAGGAAGACCGCAGGTCATG
GCCTCGATGACAGTAAGCCCGAAAGCCTCATAGAAAGCAGGCTGCACGCAGAAGAGATAT
GCATGTGAGGACACAATTTGGTACAAGGTGAGGAACTGAGGATGTGGTTTATGCAACAAA
GTAGTTACCTGCACAAAGGCACCCTTGGTGTCGCAGATGTAACGGTAGAGCTCAGCATTA
CGGACACGGTTCATCTGGGCGGAGATCCAGCGGACATGGCCATTCAGGTTGTACTGCTCA
ATAAGGTCGAACATCTTCTTGAACTCAGCCTGCTCCTCCTTGTCCTTTGATGGATTGCCA
TGGTCACCACAGACAACCACAAGGTTAACAAGCTCCTGCAAGCGAGGGTTCTTGCCATAC
AGCTCAACCAGACCAGTCAAGTTCTTGACACGGTCCAAACGAGCCATGGAGAAGATGATT
GGCTTGTTCCTGTCCTTGAGCACATACCTGCAGAACGTATTCTAGTCAGATGAACAGCAA
TATATAATGCATCAGACCGATGCAGCTCAGGTGGTAAGAAACAATTCTCTAGTTCTCACT
TGTGCTCATTGTTGTCGACATTACTGTAGAGCAGCTCCTCAATCTCTGGGTGGAGGGAGG
TGAGCCTCCTCTGTGACTCGGAGTATGGGAAGTAGATGGACATGTCCGCACCAGGTGAGA
CTATGTTAAACTTGGGGTCGAAAACATCGATACCATGGACAACACGGTACATTCCAGGCA
TTGTGAATGCCATGTGAGACTCGTACTGACCGACGGTGTCCTTGCTGAAAAGGCAGAATT
GGCATTAGGCCATGCAAAGATAACTGCATTCTACAACAAACAAATGGATATGATCAGTGA
AAGTTTAGCTGTGAAGAAATATTACTTTCCAGCAATCTCTTGGAAGGTGCTTGTGATGAT
GAAGTCGGCATGGTTCATGGCAATCAGGTCCGTAGTGAACTGGCATGAGAAGTGGTAGTG
GTCCTCAAACTTCTTCCAGTAGAGGTCAGAGTTGGGGTACTTGGTTTTCTCAAGCGCGTG
CGCAATGGTACACTGCATGCCAACGATCATGGTAACATCAGCAAAGATCAATATGTGGTA
AATAAGCTTCCAACAACAGAAAGGCATCTTTTGAATCCATACATGAGTAACACCCATCTT
GTGCGCAAGCAGGCAAGCAACAAGGTTTCCATCGCTGTAGTTTCCGATGATGAGATCGGG
ATTGGCCTGGAGCTCTCCAGAAATCTCATGTGCCACATCCTGGTAGAAATGGGACAGAGT
TAGCAAGATATATTCGTGAATAATGACAAAGGTATTGATGGTGTCGTTAGGTATCTACTT
CAGTGAAAGTCTCCAGGTACGGCCAGACTTCAAAACGAGAGATCCACTTGCGAACAATTC
CACTTTCAGTTCTGAATGGCACACGGAGGATGTGGGTGTGCTCAGTGCCGAGGACCTTCT
CAAGACGCTGACCACAGGTCGTGCCGGTTGCATCAGGGAGAAGCCTGGTAACCTATGCAG
GGCCAAAAAAAAAGAGGTTCAGTATCATATGACAAGTTTTAATTGTCGTACGAGATGTCA
CACTTACAATAAGGATCCGTGGTGTGATGTCGAGGCCTTGCTGCTTGATCCTCAGCAGCA
TCTCATTCTCCATTGCACGCACTTGGTCCAAAATGTAGACAACCTTTGGGAAATCACAGC
ACAAAGTTTAATGAGAAAAAGTTTACTTGTGTGATCATGTATCTGTGCCAAAACTATGCA
ACGATGTGTTACCTGGCCTCCAGTGTCAGGATACCCCAAGACATTGGCTTGGGCAAAGTA
ACCGTGTGGCGACAGGATGACAACGTTGAACACCATCGGGATTGTGCCAAGGAACTTCTC
GAGCGTGGATGGGTCGGGAGCCTCGAGAAGGTCGAGGAGAAGGTGAAGGGTCTCCTGCGC
ACGCTTGGCGCAGTCACCCCAACCCTTCTCCAGACCAAGTTCTTGGAACCTGCATTTGCC
CAATCAAAAGAATCGTTAAAAACATTACAGTGGTTCCTTGTCAGGAACATACTCCAAACC
CCAGGGCTGGTTATTTATGATGTACAACACAATAGTCAGTACTCAGTACCTGTGGTGGAA
GTCCGAGTATGGGGTGTCTGCCGGGAGCCCAGACAGATGCTCCTCGGCCTTCCTCAGAGC
TCCCTGGAGAGCACTGAGGCTGCGGATCCTGTCATTCAGCATCATTGTCTGAAGGAAACA
GAGTACAGGTTTACATGCATCTTTTTTTCTTCCGATTCTCAAAGTTGTAAAAAAAAGGAT
ACAGATTGAAAGATTGGGTTACCATGCCCTTGTAATTGTGCGCGCGGAGGAAGTTGAGCA
GGGGGTTCATGCTTTCCTTGTCATGGAAGAGCTTCGACGACAGGTGCCTGTTGAGGAACT
GCACGCCGTTGCCGATGGACTTGGACAGGGAAGGGCGAGGGAAGGAGGCGTTGAATGGCT
CAAAGTCCAGTTCAAGCACAAAGTCCTTGTTGCTGTCAAATCATAAAAATATTGTCACGC
AACAGTTGATAACATCAACAGAGTAAGTGAACGAAATCATCAGTTCCTTATCTCAATTCT
CTGTTACTGAATTTTGCTCTCCTTTTTTACCTTCCTTCCACAAGCTGTTCCTTGAACTGC
AGGTACTCAGGGACAGTCAACTCCTCGACGGCGAGCTCGCTCACGTTGACCCTCACATAC
TCCCAGACACCAGGCCTTGGACGGATGGCAAGCGCGACCCATGGCGAGATGACGATCGCC
TCCTGTATCATGTATAGAAATGCACCGATTACAGCAATGGTAAAAGTGAAAAGGGATGCT
CAGGTCCACTGAGATAACAAGTCAGAGGCCAACCTGCGCTGCCCTGAGCACATCCTCAAA
GGCGCCATCCTTGAGCTTCTCGCGCTCTGCCTCGGGGATGGCCGCGTTGTACTCAGCGAT
GATCTGGTGGGACTGCAGCATTCCATTTCCAAGGTTGACCAACCTGCACAAAGCATGGTC
ATATGCCCCCATAAGATACACCATATATCATTCAGAATTATCGCATAGGGTAAGATCCAC
CAAATATATTCGCAATTCAGAGAAGAATTTGGAATTCCATTCAAAATATTACAGTGCTGG
TTTTGACGGTTCATTTACTAAACTTGACAAAATTATATGGGATTCAGTTCGGTCAGTCAG
ATCGATGTTGTGCCACATAGATCCTGTGAGATCCAGGCATCGGCAGACCGATTAGTAGAT
CATATTCAGAAAGTCTTGATTAGCACTAGGACAAGTGCAGGGTACATTCATTCTCCGCAG
CTGCACCAGCGCACGTGCAGTCAGATCTGGCAGCTACCAACAGAGTTACAGAACCCCAGC
AGCACGAGGTGTGCCATCAGTGTTCAGTACTAGGTTTCGACAGAAACTTGTTTAAACATT
TGATTTTTGGGCCAGGTTTCTTGAGCGGGAATGAAGTTGCAGGCTAGGCCAGATCTAGTC
AATTGGAGTATATAACACTTCTCTACTGGCCACCAGCAGGAAGATTTACATGCTGGCATA
AGAAATAAAAGTTAGTGACACTGCAATGGGAAACAAGGGTTGGACGACCTGGTGAAGACG
GCGACGAGCTCGTTGGGGTGCGCGGAGAGGGAGTCGCCGATGCGCTCCCTAACGCTGTGG
AGGCGGCTGAGGACGCGGTCGCCGGCGGCTTCCCCCATCGCTCAAGCTATCCTGCAGAAC
AGAACAAGATTATGGGTTGCGGGTTCTTGAGTTCAGTTGAGATCCAAGAGATGAACAGGA
GGAACCGAACAGAGTTTCCAGACGACCAGAGAGTAGAAACATCTGACGGTCGCAAAACAG
AGGATCGAGAGGCATACATACATACAAGGATCAAAATGCGGACGAAGGTTTCAGACAGAG
GGCCAGGACGGATTCCGAAGTGTCGTCCGGCGAGAATATCCAGACGACCAGAGAGTAGCC
GCCGGTGGGTTTGCATGAGCAGCAGCGGCCGTGGTCCGTCCGTTGGAACCACTCGGAAGC
TGGCGAGGAGGAGGAAGAGTGAGGCGTGCGAGCAGCTTGTAAAAGCATGAGACCGGCGTG
GGGTTTCGGGATGGGATTCGTTTCTTGCAGGCCATGCCAAGGTGGCTGTTACGAGGGCTG
GCTAATGGTGGTGACCAGGCCTTGTAAAAAGATGAATTTAACAAGAAAGGAGAACCAACC
GACAGCGCGAGTTCCGACGTGGACTGTGGCACAGACTTGTCGGCGGGAAGGGGGGAGGAT
CCATGAGTGAGTCAATATCGCCAGATCTTACAACATCCATGCACCCACTTGGTGGCTTGG
AACCTTAAACCCGTAGAAGAGAATGATGTGAACTTGGCAGCCAGGACCCCAGATCCGGCC
GGAAGACCACATCTCCGCAAGTGGATGCTGACATGCTGGTGGCTAGTTCAGCAAACCAGC
CTAGTAGTACCAATTTTAACAGCAAAAACAGAGGTAGCTGCACCGACGACGAGGAAAGCA
AAAGAAAGAAAGAAGGAACTCCATTGCCATGAGGACGACCGCACGTTGCTCTTCTTCTCC
GAGAGGAGAAGCCCGAGAAACTGTAGAGCTCAAGCGGAGAGAGGTGGGCGACGACGACGG
GGAAGGGGGAGGATCCATGAGTGAGTATCCTTCCTACCTACCAGATCTAAGGTGCATGCA
TCATCCACTTGGTGCTGAAACCTTAAACCCAGAGAAGAGAATGATGGGAGCCCCCAGATC
CGGATGCCTGCCACCCACCACATCTACGCAAGCGGGTGCCGATTGCTATCTGTCTCCTAG
CTAGTGCATGATGAAGCCGGCTTGTTTTTTCATGACAGGAGGAACAGAGGATGCTGCGCC
GACGACGCTGAAAGCAGAGCACCCAGAAGAAAGAAAGAACTCCATTGGCATGGGGAGGAG
CTCACCTTGCTCTGCTTCTCCGCAAGGAGAACGAACCCCGGGAAACCGGTTGGGTGAAAG
GTATGCTGCAGATAGGGACGACGAGGGGTGAATGCAGCGCTCTGCCCAGGGCAAGGCAGG
GTATTTGTGCTGCACGGGAGAGGTGGCTGGTGGCACGTCCCGTCAATCCTCCTTCTTTCA
CTGCCACCTCCTTCACTGTGCAAATTTTCCTTTGCTTGCGAAACAATTCAGTGTAAATGC
TCAGCCATTTCGATTTGCACTTATGGTACGAGACACTGGAATGGAGGCACGAAAGGCTAC
GTGTTTCCACATTCCAGCGTTTTAATTCGGGAAGGTTTGGGGAGCAAGACATGGACCAAG
TGGACATCGCGGCAGTTATATATTTTGAAATTTGTTTCGAAGATCCTTCCAGCTCCATGC
GCTTGAGCACCTTATTATTATTATTTTCAGAATAGCGTCCTATGCTTTGAGGGCGTTCCT
GTTTCTATCAAGAGTAATGGACTAGGTGCTTATACAGTACAAAAGAACAAACTAGATTAA
GCAAACTTGGCTGATGTTAGGGCAGTCAAGAAAGCTGCATGAGTGAATGTGTAACCCACG
GGAAGGGAGCTAATCCAACTAATCATGCTTGCACAATGGAAAGAGACACCACAGTTTTCG
ACAAATCAGGCTTAATAGCCGGTTTTGCATCTCCAGTCCACCATAGTTCAAAGTTTTTGA
CTTGATATTGTTGCTTGTATTTCTTCTCAATTTATTTCAGGCCTTCCATAATGTGCATTA
AATGGAAAAAAAATGTTTCCGTCAACTACAAAGGCGATGGCGTATATGATGACTTCCTCA
ATTTCAAAATAATGCGTCGATTCAGTCTTTCAAAAGTTACGCATAGAGGTAGGACGTGCA
TGTGTGCCTATGTTTATAGGGGTTAGTATATATGTGTATATATAAACGTATGTGTTTGTA
GTGTGTTAGAAACAGCCGAATTTTTCCTCCAAAAATTGAAACAACCGATTTTGTGATAAC
ACACGACTAAGATCAACTCCAGCCGTTCGGCGCATAAAATAGCGACACCTGGGCCACATC
GGCGAAAAAATCGGCGCGTGGAAGCTCCGGTTCCCCAAACTTCGTTTTTATAAACCAATC
TCGGTCAAAATTCGACCAAACACGACATAAATTTGAAAGAAATTCATACTCATTGATATT
TGCATAAACTAAACTAAAAACATAATTTAAAACAACAACAACTACTACTACTACGCTGCC
TTCTACATGCCGAGAAGCCGGTAGAAGTTGGTGTAGTTGTCGCATCAACCTGCACTCCGC
CGCCGTCGTCGTCATCGTCGTCCTGCACTACGCTGTCCGTGAGGAATCAATGGAAGAGCA
GCCTTGGCATTGTGCAAGCATCACAGTGTATGTAGGGGAGCCTGTAGGTACGTACATACG
TAGACCACGTAGGTCGTTGCACACCAACCAGCCAGGGAGCAACTTTTTTGCTTTCCGTGC
ACGATGGGGACGGGGCTCCTGTCAAAGGACGGGAAATCATCGGGATGGATGATGAGAGAG
ATGCTTGGGAGATCCATCCATCGGGTTTCGCTTGGGTTGGAAGCAAGGTGCCTCAACTTT
CTTCAGGTGGATCGTCCCTTCGTACCCTACCCACACAACCCAACCGAAATTCCCACCAAA
ACTTGTTCCTTCTTATCCACACTCTCTACCCCCCTAGCCTCACTGCTTGGGCGCTTGGCG
GTTTATGTTCAAAATTTTGCAAACTTTTACTCCCTTCGTTTTTAAATATAAGTCTTTTAA
AAGGTTTTACTAAGGGGACTACATATAGATGTATATAGACATACTTTAAANTATAGATTC
ACTCATTTTGTTTCATATGTAGTTCTTTATTAAATCTATAAAAAGACTTACATTTAGGAA
CGGAGGGAGTACATGTAGGATCTCATGGGTCCGATTCAGTGAAGCAAAATGCGTCAGTTT
TTTCTTTTAAGATAGCATCTTGGCCTCTATATCAGTTGATGCAAACATCACTGCATGGAT
TATCGCACAGTTTGCAGGATTCAAGCGTGAGAAGGTGTGGTTTTTTAGTTTCTACTGTGA
CGGCTCCATAATGATTGTTGAACATATAGTTTGCATTTATATGTGTATGGTCCGGCCTAT
CTCCTAGGCTTTGTATAATCGAGGTTGAAGCTCATATTATACTTTATATATGTGTACATG
CATCCAATTAATTCACCGTGTGTTGCATTGCCAACATCTCTTTCTACATGGTATCATACG
TAACATTCCCACCCTAACCCTACAACCACCACCGCCGCCGCAGCGTGCCTCTCCTCA
