Map Locations of contig_353557 (5740 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_353557

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_50055 2 2354 bp AK252473.1 Available Available None





CDS Structure of MLOC_50055






Contig Sequence (5740 bp)

>contig_353557 5740 assembly3_WGSMorex_rbca.fasta
CTTAGCTAAGAGCCCGCTTACCTTCTCTCTCCTCTTCTCTTTCCTTCAACTAAGCAAAAA
TATACTACTTTATTCCTTATAGCCAGCTGACTNNGCTCTATTGTACTTGCTCTTAGGCCG
CCTCCAATGCAAAGGTGCTAAGATGTGGTGCTAAGAGCATTAAATAGCTTAGCAACTTAA
CTTTCCAATGCATAGGTGCTTAACTTGTTGTTGCTAAGTTCACTCTGTTTAATGATTTAG
CACCTAAACTTTCTCATGTATTGGTCATCTTCTTTCATTTAAGTGGTTTGCCTAGGTTCA
TGTGTATGGCATTGATTCTTCCTGGGGTCACCAGAGTGGTCTCTTTCCTCCTTAATTGCT
ATGCCATGTCATTTTTTTGCTTATGTGACATGCTTAGCACCTGTCCACCATGGAGCATCG
GGAAGGGTCTTAGAGCAAGTACAATAAAGCTTAATCAGCTGGCTATAAGAAATAAAATGA
TATATTTATACTTAGTTGGAGAAAAAAGAAGAAGAAAGAGAATGTAAGCTAGCTCTTAGT
TAAAAACCAGTTCTACACGTTCTCTTAGGCACTTTGTAGGACTGAATGGTGGGTCATATA
GTAAGTAATACACTTTTGTTACCAACTATTTTACGTGTTAGCTATCAGATATGCTATAGG
TAACATGACAATGTCTTATAGCCAACAGCTAGCTATATTATTAATTGTGCTCTTAGAATA
GTTATATGTTAAGATGTTGGTTAACGACATTAACAATAAGCTAACCGATAACTGTTGAAG
ATGGCCTTATAGACACATCGTAGCAAGCAGTAAAGGCTACACCTGATATGGTGACCGGCC
TTTTTTCGCCGTTCGTTCGCTCTGCTTAGCTTGCTCATCACTGCAGGTTGTTGACACATT
GGATGCACATTCACGTGTGTTACCGTATGCGTGCGTTCGATCGTGTGATGGCCGCAGAAC
AAAAGAAAAGAAAAGAAAAAAAACATAGCAACCGTCACCTGCCAACCAAATCTCACATAC
ATTCGTAGGATAGGAACACGGAACAGGTAGCAACCGACCTACACATTGATCAACTCTTAC
TCCTAGTTGCAATCACCTCAGCGCAGTACAAAGCCAACAAGGATCATGGATCACAAAACA
TGACAAGTAGTACTAGTAATCAAGACAGAATTCACGGATCGAGGATTCTTCTGGTGAACT
TTATTGTGCTTTTCTTGGGCGATGACCGTGGTGCAGAGTGCGTTCATGGCTGGATGCATG
GGAGACGAGCCGCGAAGGAGCGCCATTGTTGCCCTGCCCCACAAGAACGACGACGTGCCA
CCGCCCTGCTAGCCGCCGCCGCCGCCGCCGCCGCCTCGTCGGACGTCTCCTCCACTGCCG
GATAGAAGGAGGCGACCGGCGCCGAGGCGTACCTGCGGGTCCAGTCCCTGGCCTTGTGCT
CGAAGAGACCACGCTCGCGCTTGTACAGCCGGGCGGCGTCCCGGCGGACGGGGCGGTCGA
GCAGGGGGTCGTAGAGGACGGAGACGACGGACAGGAGGGCCGTGCTTACCGTCAGAGAAG
GCCTCCACTCGCTCCCGAAGATGTCCAGCGCCATCTTCCCCTCCGGCCCGATGTTCGGAT
GGTACACCTGCACAGACACGCGTACGTCAGTCATACAGATGCATGCAGCGCAGACAGAGG
CCAGTGCCGACGACTCACCTTGGTCTTGAAGGTGAGCTTGATGGGCTTGAAGGGGTAGTC
CTTGGGGTAGGCGACGTCGACGGGGAACGTGCCGCCGGAGTAGGGGCTGCCGTCGGGGCC
GTCGATGACCACCTCCCAGTGGAACAGGTCCGTCACGGGCGCCGGGCCAGGCCGGCAGAA
CGCCGGGGGGTCGATCCAGAGCAGCTTCAGCTCCTTGCGGATCCGCCTGGTCGCCCAGTC
GGATTCCGGCATGGTCGGCGGCGGTGGTGCCCGCGCGCTGAGTCTGATCACCACCCCACT
TCCCGTTCGCCCCGCCTCCGTGGAGTAGCTGCCAACTTTGCGGTGCAAGTAAAGCTGCTA
CACTGGACTGGCTCTCCGGACCAGCTGGGGTGCTTTATATGGATCCATGACTACTGCAAA
CAGACCGCTGCGTCAGGCCACACCTCGAGTCTCCGAACTCAGATTTTTTTTTTCTCTTTC
GAAAAGGTCAAAAGACTGTATGACAGCAGAGATCAAACTACATCCAATTAACTGGCAGAA
CATAAGGCAGCTGAAGCGGATGTCGTTTAGGTCACAAGTCACACCATCATCGACGACAAT
GTTCACAGCGTCACTCGACTTAACTTGAGTCAAGGGCCTTACAACTAACTGGAGTCTAAA
CATATATGATGAGATGCACTCTACCCCAGACACAGGCTATATGCATCTGTACATTTGTTT
ATATACACATACAACGATACAACATTTATTAATTTGAATTATGCAGGTCAACTCGAGAAG
TTCCGGTTTTGGGGAGACGCCTAACTTATGCCACACCAACCATTCGGTGCAGCTGAGGGG
GAGGACAAGCAGGTCCAACATCCGCTCCGCTTTCGCCTCAAAGCAGCGAGTCATGATACC
AATTGTTATACAGGCGCCCAAACTGGAGGAGGCTACCATACGTTCTATCCCACACGCCCA
CGAAAAGGGCGTCTGTGTCCGGGCTGAAGGACATCCCAGATATCTCACCGAAGAAGTCCA
GCTCTTGCCTTCTCTTGTAGTCGCTCTTCACATCGAAGATGTGCACAAAGTCCGCTGGTT
CCGCCATCGACAGGAACTGCCCGTCCGACGTGAAGCGGATCGATCTAATGGCTCCAAGGT
TACCCTTCAATACATGGACTGCTTTCGATAGGTTCCTCGCGTCCCAGATTCGGCATGTCT
TGTCTTGGTTCCCAGTAGCAAATGTTCGGCCATCAGGGCTCCAGGCTGATGCGAATGAGA
AGTCGTGATGACCTTTCATGGAATGAAGAGTCTGTGTACAGAAAATAGAACAGGTGCACC
CACTTAATCACACATCGTATCAGCGTTTTAATTTGACACATTAATAGGGTTTGGTTAACA
TCTGGTGTTTTATGCCTGGGATCGCAAGGGGTATACCTTTCCTGAATTGGCATCAATAAG
TAAACCATTAGGATCATCCCCCACAATAACAACAAGCTTTCCATCAGGGCTCAGTGATGT
ATGCTGCATCAAGAAAACAACAGTGTAAGGCCAGAGTAATTTTAATATATAACAAGTGCA
TAAATGGTGTTTTGCTCCATTTACTATCAATACAATGTCGAAAAGGGAGCAAGCCAAAAA
CAGGAAGAAAAAAAAGTTTCTGCGGTTGGCATGTGCAAGAATAATCCTGAAGAATGCCTA
TTAGCGCAAATGTAAGAGCATCTCCAGCAGCTGCTCTATCACACAAGCTAGATGCAAAAA
TAGCAAAAGTAGGAAAGAGCAACATTAATCCTGAAGGATGCCTATTAGCACAAATGTAAA
GAGCATCTCCAGCATCTGCTCTTATCACGCACACTAGATGCAAAAAATAGCAAAAGTAGG
AAGACCTTCCTACAGCAGCCGCACGCCAACGTGCAAGATTAATCCTGAAGGATACCCATT
AGCACAAATGTAAGAGCATCTCCAGCAGTTGTTCTATCACGCAAGCTAGATGCAAAAAAT
AGCAAAAGTAGGTAAGTCCTTCCTCCAGCAGCCACGCACCCACTTGCAAGATTAATCCTG
AAGGATGCCTATTAGCACAAATGTAAGAGCCTTCTCCGGCAGCTGTTCTATCACGCAAGC
TATATGCAAAATATAGCAGAAGTAGGCAAGACCTTCTCCAGCAGCCATCTTTGTATCCAT
CCATCCCAGCCTGGACAAACGCCATCTTTGGCGTGTGCGGTCTTCTATCCATGCTTGGAG
CTCAACCACCACATCCAGATGATTCACTTCTGCCACAACGGTCGATGGCTCAACTCCACA
CTCCGTACCCCACCCCGAAGGTCGGATCCCGCTCCCTCCCCCCTCCTTCCTAGCACAAGT
GAAACGACGGTGGCCAAGTGACAGCACAGGTTGGTGGTGGCAGACTGCCAGGAAGGGAAG
TAACCGATTGGGATGATCTGGATTGGGACTTAGGAGAGGTGGACGGGAGTTGGTGGATGA
GGAGGTGCTTGGATGTGCACGGGAGTTGGTGATGAGGCGGCGCTTGGATGTGGACGAGGA
GCGGCCGACGGGAGGATATGGATGAGGAGCTCCTTGCTGTTGCTTGCGGTGGATAATGAG
GGTGGCCAGGATGCAAGAGTGATGGAGTGGCGATGCATCTCGGGTGGGGTACATCCTACA
CAGAGTGGAGAACCCTGTTGCGACCAACTGCGTCAATGGCCCTGGCAGTTGCTGCCGAAT
TTGGAAGGCAGAGATGCATGCGCTTTGGTCGAACGAGGCATAGAGGAGAGATCAATGGGG
ATTGTGCATGTCGCGAGAGAGGCAAGAGAGATGTGTGCTTTAGTTCTCTGTACGCGTGGG
CTGATGGGCTCAGCAATGAACTGTGCCTGTTTGATTCCAATATGGTATTCGTATCTAAGT
GGTTGATTTGTAAACGCTGCTAGATGAAGAGTGATAATGTTGTGTTGCTCCGTTCCATTA
TAGTATTCAGTGGCATAAATTTGCTTTCGTAGCTACCGTAGTTGATATAATGTTTGCTCA
TGTACGACAATCGAATTTGATGCGGCTTTCTACACCTAGACGGAAAAAATAGTGACTGGC
GGATCAATACGAACGACAAACAAAAATATATAGACTAATTGCAGAAATGCACCAGAAGAT
AGTTCGAAACACAGTCGATATATATCTTGCAGTTATAATTACATTCGTCAGAAATGTTAC
CATTACAAATATACTTTTAGTTACGGGATATTGCTAACATACATGAGAGTATATGGAAGG
TGGAATTTGACTGCGTCTGTTGGAGATGTAAGAGAGAGAGAGGGGGGGTATTTTTAGGTG
GCCAGCCAAATGGAGATATAGAGGGTCAAATTTGGCTATTCTCCTCGGCATGTTCTAGCC
ACACTTCTCAGTTGTGGCAACAGTAAAAATAAATCTTGAACTGAGGCACCATCAGTTCAT
ATTCTTCTGTTTCGTTTTTACATAAAAAAAATCAAATTCAAATTTTACTAGGTTAGACAA
CAGCAAGATGCCAAAAGATCATAACCATATGCACCACGAGGAGGAAAACAGTGTGTTCCA
GGTTTCTAACACAAAGGGGAAAAGTAAAGGAAATAACCAAAGGAACTTACATTCACTGGC
CAATCAAACTGAAAGTGCTTGCATAACTGGAATCTCTCCATGTCATAGTCTCTTACACCA
GAGTCATTATTCGATGCCATGAAATGAACAGCACCGCTGGGAGAAAAACAAGAACTAGCA
TGAACACACAGTCAACAAGGTCACAACCTAATAACGGGGACATCACATTACCTAGAAGTA
TTGAATATCTCAACTGCATTAGTAATGGCATTATCATCATATGTTGTTCGACAGCAAAAG
CTTATTCCTTCTCGGTCAAGATGCTGCATTCCACATCAACAAAAGTGTAAAAAATCTATA
CTAGATCAATAGCTAAGAGTTCGAAAACAGATTAAGCATGCGAGCACATCAAAAGAGTAC
AATCTATAAAAATAAGATAATGTCATCAAAGAACTAGCCATGGACAGGGGTGCGTGGAAG
CTTGCTATNNNNGTGCCAGAACCATGAGTTGGTCGCGAGA