Contig Data
morexGenes
Links



Map Locations of contig_353420 (6577 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_353420

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_50050 1 809 bp MLOC_50050.1 Available Available LOC_Os04g56480.3, FRAME:+1, EVALUE:2e-26, 13104.m05883 protein pelota, putative, expressed





CDS Structure of MLOC_50050






Contig Sequence (6577 bp)

>contig_353420 6577 assembly3_WGSMorex_rbca.fasta
TCCCAGGAAACATTAGATTAATAATTCAGATAGCTTGGTGTAGCCTGCTTTGTTCAGTTG
AAATACGTTTGCTACAGGAGCTGGTTGCTGATCCCTACTCTTGATGTTGAAGATGCTATT
GACTGTGAATCCATATTAGGCTATTTACATATAGGATTGGAAAGAATCGCATCTTGTGGT
AGTCACTATTTTTTGCATTTTCAAATTAAAAAAATTTGCAAGAAAAAATAGCAGGCTTCC
CTTTCAGTAGTCCATTTTGTTAGTCTGGGCATATCAATAGTCCATATTTGTTAGTCTGGG
CATTGCAAGGGAGGTTCCCCATATTTGATGCGTGGTTTCAAGCCAAATATATGTATGTAC
ATGTGCTTCCTATGCATCCAATATGACCTGAAAATTGAAACAGAAGTTCATGAGTTGCAA
TTTGCCTGTACAGTCTTGCTATTTATTTATTTGTTCTCCGTCTGTTTCCCCTTGTAGGAA
CACGGACATCGTTAGCAGGAGAAAGTATGTGAACTTGGTTGAGTCAGTCAAGAAATATGG
TGGTACAGTGCACATATTTTCTTCGATGCATGTCTCCGGCGACCGTGAGTATACTGCCAA
CTATTTTGAACTCGCCCACCTTGTTCATAATTGTTTACTTCACACTACAATCAATGAGAA
GTATTGAGATGCAATAAAATGCCACACCGTTGGAAATGTTGCAAAGAAAATTAAAAATTA
ACTGAATATAGTTATAGTTACATGCTATGGCAAAAATATTGAAGCAAGAAGGAAGTTCTT
TATTACACCCATCGTTTCTGCACAGTTTCTGCGTTCTGAGATTGCATTTTTTTTTTCTCC
CGATGTGTTTGTGCAGAATTGGCGCAGTTGACAGGAATAGCAGCTATACTTCGATTCCCC
CTGCCAGATTTGGAGGACATCGAGATGTGATTAGTCCAGTCCCTCCGGAGCTGCCTAACA
TTTTTCGTACCAACCTGTTAACTTATAGCTGATCAAATGTGATAATATAACAGTTTGGCT
CAAAGAAATTCTGACAACATTTTAATGTATCCTTGTTGTATTTTCTTTTGAGAAGATATC
TTTATTGTAAATGGTTAGTTATGCCACATCTATTGGTTATTTTTGACTTGATAATAAGGG
GACCCTCTCCATTTTTCCTCTTTGCGAGACAGAAGCTCATCTATGCTCCTGTGTGAAGGC
AAGCGGGCTGGGTCTTATATATGTTCATGTAGACTTCTTTGAGCGGTTTTGGGAAGTTTC
CATGGACCGGTTTCAGAAGTTTCCGTCTAATTTTTTATTTTCTTTTGTTCTCATTGTTTT
CATATCAGTTTTTCCTTGTTAATTTCTTTGCTAGGATTTTTGTTCTTCATTTTTTCAGAT
ACCTGTGGACTCTTTTTCAAATACGTGCTGAACATTTTCGGTATATAGGTCTAACATTTT
TTAAATTACTTGAATGTTTTTTATACATTGTATATATTAAAAAAACAGAATATATAACTT
CCGAACGTTCGGTTTTTTAGCATCAGATCCGAACCGATCGGATGCCATTAATTCTGGATC
CCACGACCCAAGAGTATACAGGCGTTAGTAAGCGATGCACTAGCCACCTTACCAAAGACT
TGTTGACCACGAGATGGAAAAACATCTTTTAACCATCTTTACTTTCGTAATCAAGAATGA
AAGGTATTTTTTCGTAGATTTCTCTAATGCATCATATGTTGGTGTTTTTGTGAACACTTC
GATGAGTGTTATTCATGTGGCGAGAAATTTTGGTCTCCGCAAGACACAACCCTCTCATGG
GTGTTGCATTTCAAGTGCTGAAGATGGGCTCATGTCTTTGCATACGCTTCGATAGTTTGC
AATGATGATGTTAGTGATGTAGTCGATGAAGCCTCCACGGAGGTGCAGGTAGACGACATA
AATGATGAGAAAATGATCAGGTGTCCTGTGGTACAAACCGACACGCCATATTTTAGTACA
CCTCTTGTGTAAATATTATAGTAATATATGCCCCACACCTCGTACCCCACGTATAAATAC
CATTGTAATTTTTTACCTGGGAAAAAATATTGAAAACATACCTCCCATAACTTATGTGTA
AACAACATGGTAATATACACACCGCGGGATGAAAACATATGCACAAAAAATGCGGTAACA
TTGTCCCCAAGTAAAATAGTTGTTTAAAATATACCAATGGAATTTGATCTTGAGTAGACA
AGTTGTTGAAAATATACACCCAACCCGGTAACTTCGGTTCAAACAACATGGTAATATACA
TATCATAGGTGTGGCAACTTGTGATCCGTACAAAAAAGTCATTGGAAAACATACCCTCGT
AACCTCTGTGTAAATAGCATGGTAATATATGCATAATAGAGTTGATAATTCACGTTGATA
ACTTTTGACACGAGATAGAAGTTGTTAAAAGATATACCCTAATAACTTATGTGTAAATAA
CATGGTAATATATGCACAATTGAGATGATAACTCATGTACAAACACCGCGGTAACTTTTT
CCCTGAACCTCATAACTTACATTCAACCACTATGGTAACTTTGAATTCAAGGAAAAAACG
TTGAAATATAACTTCTTCCACAATTTCCATGTAAATTCTTGGTAATTTAAGCACCACAGA
CTTAATATCTTAAGTGTAAACACCATGGTAACTTTCATCCAGGATTTTTTTTTATTGAAA
CATACCCCAATGTAAAGTTACCATACTGCTCCATGCTAAAGTTATCATGCTTCTCATGAT
ATAGTTAATACCCTTCTCATACTGTAGTTACCACGCTTATCATGGCAGGGGCGCTGGCTA
GAGTCTGGTGTTCCATGAAAGGCCTGGAATGCAAGGACCTGGGAGAGAATGTCTTCTTGT
TCACGTTTCATGAGCAGTCAGGAAAGCGGAAAGCGCTTGAAGATGGCCCGTAGGAGTTTG
GGAAATCAGTACTCGTGGTGGAGGATTTTGTGCCAACTAAAACAATTAAGGATTACGAGT
TGAGATAGATTCCGATATGGGTGAGGATACTTGACCTCCCCTAGGCATGATGTGTAGGGA
TGCGGGGGAGACAATCGGTAATTTCATGGGGAAGTTTGTGGACCCGGTGTGAACGGAATG
GCCGTGGGGAAGTATCTTCGATTGAAGACAATAATCAATATCTCTGAACCGCTGATGAGG
GGTTTTATGCGGGATGAGGACGAGGAGGAAGCTGCCGAAAGGGAAAAGAGGAAGGGAAGG
GAGAAGCAAGAGGAAGAGTTCTAGTGCCGTTTTGAATATGAGTTTTTACCGGACTTCTGT
TACACATGTGGCATGCTAGATCACATTGACAAAGACTGCAAGCGAACGACAATAATATGG
ATCATGGCTGAAAGCTTACATTCCAATGAAAGGAGGGGAAGGCAGCAGAGATGGGTGGGG
CAGAGCTTGGTTTGGAAGTGAAGGGAGGAACAAGTACAATTTCCATTCGTACAACCTGGG
ATCAAACAGGAATAAGTCTGGCAGTGATAGTGATAGTTCGCAAATCAGACAGAATGATCC
TCTGCGAATAAGGAGTAAAACAATGCGGATGAAGAGGTTACAAGTCCCTTGAAAGATGGA
AATGAGGGTGGGAAGAATTCTGAAAACCCAAAGCTGAGGTGGTAAAGAAGAGCTTAACCT
TTGTAGAGGGGGAGAAGGAGCATGGGAAGGACACAAACATGGTGGATCAGAACACGTCGG
AGTTTAGTAAGAGTAATGTAAAGGAAAAGGGGGTTCTAGCTGGTATGGATGAGGCTCAGA
GCAGTGCGAAGAATGGTGGTGGTATGGTCGAGAAGTGAAAGAAGGGCGAGGGAGGAGGAG
ATGGAAGGGGCAAGAGATTTGTGAGAAAAGAGAGGGAGGCTGGGTAGGGGAACCACGAGA
GGCTGGACGTCCAAGTGGGAGCAAAAAGAGGGGTGGGGCCGATGGATGTTGATGGTAAGG
AGGGGAGACAAGAAAGAAGACCAAGGGGGATGAGGAGAACAAAAACACCGGTGATGTGAA
CTCAGGGCTATCGGAACAACCCTACATAAACCAATGAAACTAGTGGCATGGAAGTACCAC
AGGCTTGGGAACCCGACGGAAGTTCGTAGTCTCCTAGAGCTCCAGGGGGAAGAAGAGCCT
GCCATTCTCTTCTTATCAGAAACAAAACTAATAGAAAAGGAATTGGACAGATTGAGGTGG
TGTTTGAGTACACCAAAGATGGTGGTAAAGGATGCGGTTGGACGGAGCGGTGGTCTCGCA
CTACTCTGGAAGAGGGGAGGGGATGCACATCTAAAGTGGAAGGACAAGTATTATATCAAT
GCGGAAGTCAGGGAAGAAGATGACACGAGGTGGAGACCGACGGGCATGTACGGTGAGTCG
AGATGGGGGGAGAAGGAGAACACCTGTCAGGCTCTGAGAACCTTATGTGCTCAGTATGAT
CTGGCATGGATCTTCCTTGGGGATTTCAATAAGATCTTGTTCGCAAATGAGAAGGAAGGA
GGGCCGGCTCGGGCCCAAGGGCGCATGGATGCATTCCAGACTCGTTGGAAGCTTGTGGTT
TGGAGGACTTGGGTTTTGTTGGGGACCCGTACACATGGAGAAACAACCGGCATTCAGTGG
ATGGTTACACTAGGGAAAGGCTTGATCGTGCGGTGGCTAACATGGAGTGGAGGTGCCTTT
TCCCATTGCATAAGATCATAAATGGGGACCCGCGACACTGGGACCATAGACCACTTATTG
CGGAGATCAATGGAAGAACATATATGACACATGAGAGGACATGGCCAAGTGTGTTCTGTT
TTGAAGCACACAGGTTGCAAGAAGAGGAGTGTGCACAGGTGGTGGAGAAGGCATAGAATG
ACGCTTTCGCAGAGGAAGGGTTTCGGTGATGGAGGGCATTAGGTAGGTGGGAGGCAAGCT
ATCTAGGTGGGACAGGTAAGTGTTGGGGGAGCTGTCGGATCGGATTAGGAAAGCAAGGAG
AGAGCTGGAGAAGTGTAGGCAGAGCCCTTTGAGCCAAGAACAAGTGAACAGAGCTTTTGT
TGCGATATAAGTTGGGTAGGCTGGAAGACCAACATAACATGTACTGGAGGCAACGAGCAC
ATGTACACTGGCTAAAGTGTGGCGACGACAATACAATTTTTTTCATGACCAGGCTTTAGA
GTGGAAGAGGAAAAATGTCATAAGAAAGTTAAGAAAGGAGGATGGGAGTGTTGTGGAGGG
AGAAGATGAGATATGGCTCTTTGTTACTAACCAATACAAAAGTTTGTTCACTTCTCATGC
AGGTTTAATCACTGATGAACTCCTCTCTTATGTCCCTGCTTCGGTCACCCAAGAAATGAA
TGACAGGCTGACACAACCATATGAGGCGGAGGAGGTGAAAAAAGCTCTGGAGGCCATTGG
TGACCTCAAAGCTCCGGGAGCAGACGGAATGTCGGTTGTGTTCTATAAAAGGTTCTCGGA
GTTGGTGGGACAGAAGGTACAAGATGAAGTGCTTGTTGTCCTAAATGGGGGTGCTATGTC
AGAGACAAGGAATGATACCATCATAGTGTTGATTCCAAAGAATAAAAATCCATAAAGAGT
GATGGAGTTCAGACCCATAAGCCTCTGTAATGTGTTGTACAAGTTCATTTCGAAAGCAGT
GGCAAACAGATTGAAGGAAACACTTCCAGAGATCATATCACCAACACAATCAGCTTTTGT
CCGAGGGAGGATGATCACGGATAACGTGTGTTGGCCTATGAGATAAATCATCTAATGCAG
AAAAAGAAGGGTGGCCGGGATGGATTGGTTGCTATCAAACTTGATATGAGTAAGGCCTAT
GATCGAGTTGAGTAGGAATTCCTCGAGTGCATTATGCGCAAGATGGGGTTCGCTGAACAA
TGGACTAGAACCATAATGAACTGTGTCTCAAGTGTAAGATATAGGATGAAAGTAAACACA
AATCTCACTGAAACTATTGTGCCTGAAAGAGGCTTGCGCCAGGAGTACCCCCTCTCGCCG
TACCTATTCCTTTTATGTGCAGAACGTTTCTCGGCACTCTTGCACGAAACTGAGATTGAG
GGGTCGATTCAAGGAGTCCAGATTTGCCAAGGTGCCCCTAAGATCAACGGGCCCACAAGG
CAAATGCTCATAGGGATCACAAGTTGCAAGATATTCTTGCGCTTTATGAGGCCCAGTCTG
GCCAAATGACTAATAAAACAAGTTAGTCATCACTTTTAGTAAGGGCACTAGCAATGCTAG
AAGAGTAGCAGTGTTGCAGATCCTTGGAATCACGCATAAGTCACTAGGAAACCGATATCT
CGGCCTACCAGTGTACGTCGGAGCAACAAGAAGCAAGGAGTTAGAATACAGTAAACACAG
CATTTGGCAAATGATGCAGGGATGGGTGGAAAAAACTTTTGGCTTTGCCGGGCAAGGAGA
CGTTGGTGAAAGCAGTGGCACAAGCAATCCCAACGTGTGCCATGTCCTGCTCTGATCTAA
CTAAGAAAATGTGCGAAGAGATTGGTGTTAGGTTGATCTCTCGTTCAATGGGCCCAACGG
CCCATTGGAACCTTGACCCACGCCCTGATCGGGGGCG