Map Locations of contig_353351 (5376 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_353351

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_50049 2 1892 bp AK250175.1 Available Available None





CDS Structure of MLOC_50049






Contig Sequence (5376 bp)

>contig_353351 5376 assembly3_WGSMorex_rbca.fasta
TTAGTTTGAGAAAAGATGTTCTGAGACAAGACAAAAAGATGTCAACACAGTTTGCTCGTA
CCTTTGTGGGATCAATAATACCAGCAGCCATCAAATCCTCATACTTCCCTGTAGCGGCAT
TGTAGCCGTACCTGAAGTTGTCGTTCACAAGGACCTGGACGCAGGTACGCTCCAAATTAG
AAACACACACGTTGCTGGTATCAGGTTTATATAACAGAAGAAATCTGAATCCAAACCTTC
TCAGTGACCACGCTGCCATTAACACCAGCGTTTTTCGCAATCAGTTTAAGTGGATAACTC
AAGGATTTCCTAACAATTTCAGCGCCAACCTTGAAAAGGCAAACAGACAAATTGGTTCAT
TTTGATCGAGGAAAACAGCACCTCGAACCAAAAAAGCATTTGAATGAGGAGACTTGAAGA
AAGAGCATCTCGTTTGCCTTTTCCATACCTTTTGTTCATCATTCTCAAGGGTTTCTTTAA
TGGCATCAACTTTTGATGCAAGCCTTAGAAGGGTACATCCACCACCGACAACAATACCTT
CCTCCACAGCGGCCTGTCAACAAAGCAAGGAGTCAACTAACAAGCAATGATTACATGGAG
TTCGCTGTAAAAGTAAAATCGGTACAATACTACAGTGGACCAGAAGGCTTCTCTGAGTGA
GATCATAAATCCCAAAATATAATTAGACTTGCACCAAAGGAAGCATTACCTTTGTTGCAT
TCAGCGCGTCTTCAACCCTCAGTTTCTTTTCCTTGAGCTCAGTTTCAGTCTGTGCTCCTA
CCTACAACAAACCAAGAGGTATCATTGTATAGCTGTTATATTATGCTACCACACTACTAG
TTGCCATTCTGCAATTGCAGCCCAGTGCACCAGTAGGAAGCTCAATATGAAACAGCACAA
GTACCTGAATGACAGCAACACCACCAGATAGTTTAGCTATCCTCTCGTTTAGCTTTTCTT
TTTCATATTCTTGTTCAGAAGCCTGAAAAAGAAAAGTTTGAACAAAAGATTACTTGAGGC
ATTTTCATTCACACTTCAAGTGGCACGTGCAAAACACAAAAACTAAAGCTACTCATACAT
GAAAAACAGAGCAACCAAGAGACTGGAGAAACAAAGGAGCCATGCGAAAAATAAGAAAAA
CAGAACATGGTTTCACAAATAGGAAATTGTTTTTCTCAAGCATGCATCAAAATGCGGTCT
GTGTAATGAAGTGCATCAACTGATGCTAAGATACAGCCAAACACAAAGAAAAAGGAGAAG
CAAAAGGAGAAAAATAAACAAAGATGACAAAAAAAGAGAGACAAGAAACTGCAGCCTAAC
TAACTTGATAGGATGAAAAAGGCTATAGACAGGGGCTGCATCGGGAGGCCTAGCGCATTC
GAGAAATAGGATATGAAAAACTGGAAACATGTAATAATACAAGTTTACACTACACAGACC
TCAATTTGGTTCCTGATTTGTGTAACCCTTTTGGTTACTTCCTCCTGTGTAGTACCATCT
CCAACAATTGTTGTGGAATCCTTAGTAATTACAACCTTGGCGGCATTTCCAAGGACTTCT
TTGTCTGCTTTGTCCAGGGAGAGCCCTATTTCTTCTCGGATGACAGTGCCTGGGACAATA
ATGACCTTTATAAGTGAACCAATATCAAAACGAGAAACAACAAATTTGCACCAAAGATTA
AATTTACCTCCTGTCAGAGTTGCGATATCATCCAGGTATTGACTCTTGCGCTCTCCAAAA
CCAGGGGCTTTAATAGCAGCAATCTTCAGTGCACCTCTAAGCCTATTGACCACAAGAGTT
GCAAGAGCTTCCTGCTCAATATCCTCTGCGACTATTAAAATTGGATATCCACCCTTAATA
GCGTCCTCGAGAAGAGTGATGAGATCTCTGGCGTTGTTAATTTTCTTGTCCACAAGAAGC
AGCTGGGTCATGGAAAAAAAATCAGGTCAATAGCATAGGACTCATGGAGGTGTTGATTAC
TGACATTTAAGTAGAGAAGGTGGCAAAAAGCTATAGAGAAACAGACCTTGCAATTCTCAT
ACTCCACTGACATTTTTTCACTGTCGGTTACAAAGTAGGGAGAAATATAGCCGCGGTCGA
ATTGCATCCCTTCAACCACATAGAGGTTGTTTTCGGCACTCTTGCCTTCTTCAAGTGTAA
CCACCCCCTGTCGCCCAACCTTGCTCATAGCATCAGCTATCATGTTGCCAATTTCGTAGT
TATTTCCAGCGCTTACTGCAGCAACATCAGCAAGTTCGCTATCTTCAACCTGCAACATTG
AGAGGAATTCAATAAGTTTGAGTTTTCAATAGATCGAAATGGGGATTAGTGTTCCTGAAA
ATAACTAGTTATTACATGATTATCAGGCATTTATAACATCAGCTGGAAAAGAGAGATGGT
CAATCACAGACCACATAACTTTCAGAAGAAATCCGGGGGAAATATAGACATGGAAAAACA
GAACAGAGCATGTGTATTTGGAACGGAAGAAAAAAGGAAAATACATGTGCTGATGCGGCA
CAGTTCATTGGAAAACCTGGTGATGTCATGTTCAGCACCAATTGCTGTGGACTTAATCAT
GTACAGTATATGTCCAATTGCTGAATTCACATTTATTCTGTATTATGAGAGCAGTTGGGT
AATAGAACATGTCTCATTTACGGCCTATAAAGGTAAATAAGCCATCCTGTTTATAGGTAA
CATAGTGAGGCAGAGTCACAAGAATCAGATGCATGCTAATATTGCATTAGAAGATTGGTT
TCATATTTGTGACTGCAGAACATCATAGGTCAGAGGAGGCATAATGCAAAAATTTAAAAG
ATTTTATTTCCAGAACGGAACAAAAGATTAGCGATATCTCACCTCCTTGGACATCTTCCG
GAGCTCACCGACTAGTGCTTTGGTTGTTTTCTCAATACCACGGGCAATCTGTACTGGATT
AGCACCGGCAGCTACAATCTGCAGAAAGTAATTAAACAAACTGAACATTATGTCCAGAAC
AGAATGAGAGCACTTATATGCTATAAAGTGTAGCAAGACCCACGGCTTGATGTTGCTGTA
CCTTAACACCCTCGGCAATCATCCCTTGGGCAAGGATGACAGAAGTGGTAGTCCCATCAC
CAGCCAAATCATTGGTCTTAGCAGCAGCTTGCCTGACCAATTTAGCCCCAATATTTTCAA
CAGGGTCCTCCAGCTCAACCTGTCCAGAAGCCAATCATGAGAAAAGCTCAGTCAGGATCG
AAGGGTAAAGAAATGTTGTTCTACATCTCCTGACAGAAGAGTACCTCTTTTGCCACGGTA
ACGCCATCATTGACAATCCTAGGAGAACCGTACTTGCTCTCAAGGACAACATTCCTTCCT
TTTGGGCCAAGAGTAACCCCGACGAGATCAGCAAGCTTGTTTACCCCAGTCTGATCACAG
GGTAAAATGAAGTCAGCAATATATAAGGGATCACAAACTGAAACGGAAGCGGCGGCATAT
AAAAGATGGTACGGCGATTTCGACTGACTTGCAGCTTCTTGATAGCCGAGCCGTCCTTGT
TGAAGTAGAGCTCCTTTGCGGCGTTCGCTCGGAAACTGCACTTCCTCCCTGGCCTGATTC
TCTGCGGCAGCGAAACTGACGGGGGCGAAACGAGGGAGAGCTGCTTCTTGGCCGCGAACC
CGGTTGGGACGGCGGCGTTGATGCCGCATGTGGAGGCGCCCCCCAACGGTGAAGCCATGG
TGTGTGTGTTAACACTGTCTAAGAAATTGAAACAGTTAACTGATATGAGCAGGAGAACTG
AAACGGAAAGGCGGTGCTCCTCCGCTGGAGAACAAGTGGGTGTACAAGTGAGACTGGGTG
GCGAAGCAGAGATGAGAAAAGCTCTGTTTGCTGCGAAAGCAGAGCAGACCAGAGCAGAGC
AACAAGTTTCACATGGTTGGTCTCAAAGTAATTTTGGCCCTGATTTGACTCTGCTTGTTG
ATACGGCTGAGTGGATCTGACAACGCTGGTGGATGGTTAAGACATTGGCGACCTAATGAT
AATAATAATAATAATAATAATTGGGAGAACACGCACGGATACAGCAGCGATGCGGACCAA
GATATTCATTCAGGGTAAAAATCGACGAGGAGCGGCAAAAGTCCCCGATAGCTATGCTCT
GCTGTGATTATTGGTTGGAAACATACATAGAGGATATCGCAGCGAACGATGAGACGGCGG
TCAAAACTGATCCCTACCAAACAAGAAGCGATTGCTGCCCGTCCCGAATAGGTTGTCAAC
TCGGCCCGATCGGGCGGGTTGGAGAAGATTACATGTAAACAATTGCACGGCGTAATCGAT
GGAGGGAGGGAGGGAGGAGGAGCCGTCGATACCTGAGTGAGTGAGTGAGCGAGCGCGGAA
GAGGAGGACGGCGGGTGGCCGGCGGCTAGGGTTTAGCGGTGGTTTACCGTCGGATCTCTC
CTCGGCCTTCGGGCTTGTATAAAAATAAGAGAGCGGCGGAGGAACCAACGATGAAGGCAG
ACAGGTGGGCCGGTGATGGCGTCTGGAACCTTCTTTCCGTGGGCTCCGCTTTGCGTGGTG
GGTGGGCAAGGAATGAATGAATGTGCTTTTGTGCAAAAGTTTTGGCAAATGGCAAATTAA
CATTTTTTACGGAGAGAGTATAATTAGTATGTAATCTTCTTCGTCAGATGTTTTTTCTAA
CAAATGCAAATGTTTATATACACACATGCGCGTACATTCACTTTTGTAAATGTTTATACA
TGCACATTCTAATATGAGCATTTTTAAAAGGCTGAACCGGTGTATTATTTTAAGATTTAT
GAAATTATCGCATACGCCTCGTCGTCGAGGGAAAGCATCTCCATATCTATCATTTTTTTT
ATTTGATACATGGTTGCTTACCACATATTTCAAAGTGCTCGATAGTTAAGATCATCTTTA
CGCTCATAAATTGGTCCTAGAAACATCTACAACCGCACGTCTCAAATGATTCCTCATATA
TCCTGTGCACGGTGCCTGGTCAATAGCCGAACAGGAGAGAATGAAAAAGGTGATTCAACC
GGACCCCTCATATCATTCTATACGCAAGGGCTGTCCGCGAACCCTCGTATCCAACTCAAA
TATAGGAAAGATATAAGGGCTTGCAAACGCGTAGAATAGTCGGCCACTTTAGACGCGACC
CTACTTTGTATCATATTTTTTTCTCTCTTCCTCTCCACCAATCACGAATATATGAGAAAG
AAAATAAACAATATGGTTGCACGGACGAATAAATAGGGGATATGCCCGATCATTGTGTTG
GGTTGAGGGTGTCCCCTCCTAACAGGCTAGTCTTTTGGGGGGAGAGGGCCCAAGGCCTAT
CATAAGTCGGTGTTGCTCTCCGGTTGGGCCTGTTGA