Map Locations of contig_352491 (10101 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_352491

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_50005 1 504 bp MLOC_50005.1 Available Available None
MLOC_50007 8 5234 bp MLOC_50007.1 Available Available LOC_Os01g73580.1, FRAME:-3, EVALUE:0.0, 13101.m08029 protein glycosyl hydrolases, putative, expressed
MLOC_50006 1 357 bp None Available Available None





CDS Structure of MLOC_50005






CDS Structure of MLOC_50007






CDS Structure of MLOC_50006






Contig Sequence (10101 bp)

>contig_352491 10101 assembly3_WGSMorex_rbca.fasta
CCCGCCGCCGGCAGTGCAGAAGTCTCCCTCGCCGCTAGCAGCAGTCACTCGAGGATAGAT
CTCCTGGATCTCATCATCGGATGCAAAACCCCGGTCTCCATCCGCCGGGACGGCGATCGC
CTCGCGAGTCGCCTCTCGAGTCTCCCCCATCATCTCATCTGGATCCTCTTCTCCCTTCTG
ACGGAGATGGAAGAGAAGACTCTCCGGGTCCGGGTGCACGTGCTGCCTGTGAAGCATTGG
CTGTGTGCTCCACCGCGTTACAGATGTGAAATGTGAAATGGTGATTTGTATGCCTTACTG
ATTTCCACTGCAGATTGTTTGTGTATCTAATTTTATTCCTAGTGGAGCTTCTGAACTTCT
GTTTGATGCAGCTCCAGTGCAGATGGAGCAAAGAAGTCGCGGTCCACGTGGAAGACTTAC
GAAATACTAGTGATTTTGATGCAGCTCGAGTATCATTAAATCCTTCTCTTGTTGTGGGTG
ATCTAGCTATATATTCGGAAGCTTGGTCAGTATCTTGCCTAACCAAAGGGAAGCTATCTT
GAGAAGCAGGAAACAACCAGATCATTTGTCTACCCCAGTTGAATTTCCTGGCATGCACAA
GCTAATATTGTTTACTCCAAACCTCTGCGAATTTAAATCGTTGGTGGCAACAAGCACTAG
TCTTACTTACCAATTGCCACTACTTCAAAAGTTCAAATACACATGGTAAATATTGAAATG
AACAAGTGCGTGGCCAGTCTTTCAATCACACGACTGACTAGAATTGCTCTTTTGTGCTAA
GCATCGATCACATTTCCACCCTTCATCACATTCACTTGTGCTTTTTTCATGCTCCATGCC
CTTAGTTGCGGCACTCTGACCGTGGTACTTCCATTGTTGAAAGCATACATGTGGGTGGCG
CCGTCATCGACAAGTGCCACCGGATAAACTCTGGCCGTGATGCAGATCCTGCCACCGCTG
CCGAAGCTCTCCACGGCGGACCTATCAATCTGCACGATGGCGTCCATTTTCAGTTCCGTC
ATCGAGTGAACTACCGGAGAAATTAATGAAACAAATTAAGCCTCCCAACTCACCAGAGTC
CTGAGGGATATCTTTCTTTCCTTTTCAAGGTCAAATTCAAAGAAGCCTCCATAGGCTGGT
GTGTACAGTCCTGGTCTCAGGGAAGACCTGTGCAAATAAAACAAAATATTTCTTTTTAGT
TTCCTTCCAGGCATCAATAGATACAGACATTTATGGAAATCAAGGCTAACAAAAAATAAG
TCAATAAAGCATAAGCCCTAACCTTCTTAGGTCGGAGCACATGAGGATCATGTACTTTTG
CTGTGATTTGTAAACCCTGAAGTGCACTGCAGTGTGCTCCTCCATGTTGTCGGAGGCCAG
AATAACAAGTCCAAATGGCCCTATGCCACCATGAACCGATGCATCCGCCTCCCGGCAATG
CTTCCGGGGGTCAAAAAGCCAGGAAGGATCAAAAGGTTCGGCATCATCGATGGACGTTGG
CTCAAACTCTATCTCAACGTCAGCCTGTTATTATGTGCCCGTTAGTTACAGTTGGTCCGA
AATATATATGCCTATTTTTTTGTTGCCAAAAATGTACTATCTATAAAGTAATTAATAATT
ACCAGAAGATCCTATAGCTTTTACTGCCATGACACTTTTTGAAATAAAAACAATTCTTTG
GAAGACCAAGCTAGCTCATTTTTAAATAGGGAACTACCTGCAAAGTGTCGATTCCCTTAA
TCTCAAATAAATCTCCCTTCTTCAGCTCTAGTCCTTGATGGTTGATTTCATTTATTCGAA
GAGACTCAATCTCTTCAACTGGCCATTGCAGCAACTGCTTGCCATCGCTGTCTAACCAAA
TTTTCCTGGGGATTGACTAAATGTAACAAAAACAATTATGTTAAAGATATTACACTGATT
GTTTAAATCGATTAAATTATTGTTTCAATATGACATAATTACAGGACCTATGGGTAGATT
ATCTTACATGGATTCCTGCCCAGCCTTTTGCAATATCATCTGAAGTACTGTCTGTCTCGT
TACTCCAAGCCCATATGACTCTCCTACCCTTTTTGGAGTCAAAGAATGATTTTGAAGCAT
AGAAAGTACCATAATCAATCCTCAACCACAGCCGATTGTCATCTTGGACGGTGTCTGGCA
CAAATGCATCACGTTTGAGATCATACACCCCAATTATGTACATGTCACAGGAATTGATGC
TCACTTTGAGGACATGCTTGGCGCCACTAGGAATTTCTGAAGACATGTCTAGTCCATTGT
TACTTCCCGGCAATACCGCGAAGAAATCTAGGCACTCCCACATATTGAGGGCATTGTTTG
AATACAGCGGGCGTTCAATTCTAGTCCAATTCATAAGTCTTCACTCTTGTACAAAAGTGC
AGTACCGATGCCGTTCACCTCAGCACCAACTGCAATTCTCCATAGTCCATCCGGTCCAAT
CCAACCGGTTGTCGGATCCCTGAAATGGGTCGAGTTCAAGCCTGGTATGACATGTTGGAT
CACTGGGTTATTGCCTACTTTGGCCCATTCCCTCAGGTACGGATCAGAACGGTTTTTCGG
AAGTGCAATGTTTTGGACCTGATTCGCCTTCCTGTCGATGAGACCAGTGTATACGATGAC
CGGTTGATCACTAAACAGAATTGTGGCTGAGCCGGTCCAACATCCGCATATGTCACCCGG
GGTATCTGGTTTTATTGCGGGTTCAAGACCGATCCAGTTGATGAGGTCGGTTGAAACCGA
ATGGCCCCAAACCATGTTCATGAGGGAGTCATTGGGGTCAAAGGAGCCTTCGGGGTTATA
CTGGTAGAATTCATGGTAGACGCCATTGTAGTACATTGGTCCTGAAATTTTTATAAAGGC
AGTATAAGATGTAGGATGTTTCAATTTCTTCTCCTTTTTATTTATATACGAAGTGTTTGC
GCCTGAGGTATTCATACCACATGGATCTTTTTTGTTGTCGTAGGTTTCCAAGGATCGCCA
ATCCATCGAATATATGAAAAAATTCAGAAAATGTCAACAGATGTCCAATTAATATGATAT
GGTTTTGGTAAAAAAAGGACTAATGATATTCTAGATTTCGAAACAGAGTCAGTACTTCAT
TACTTTCGTATGCGCATAACAAATCTCTCTTGGACACATGATGTGTCATCCTAGTTTCGA
GAGCAGACCATTTTTATTTTATATTTTCTGTTGTAGTTTCTTTTTCATTTTTGTGTATAA
TCAACAAGAAAAATATGTATTTTCCCATACAGCAAAGATGCATGGTTTATCTCTATGCCA
TCGATTTTATTTGCACTGCACATGATGACAATGCCACATGGTGTAGATTTTTGGGACATG
GTTGCCGGTGCACCCTACATATCATTTTTAATATCAAATAATATAAAAATCAGACAATTC
ATTATTTTATGGCGAACGTGGTCTAAGTATTCTACTCACACATGAAGTTTTATGAAGAAA
TGACTTCAGTGTTCTTTTGGGCGAAAAAACAAAACTGTAACTTCCAAACACTTGAATAAT
ACATTTTATATAGAAGAACAATACTTTTTCCACACTAAAGACAACGGAAGCCATTTCTTC
GTGAAGCTTTACACGTGGGTATAACACTAGACCAGATTCGTTACAAAAAGTTTCAGAATT
TTTTGACTTCTCTTTTATATTTTTGAAATATATTTTTCAATTAGGGTGCACCTAGACCCA
GATTTCATTTTGTATTTTTGCATGAAACACCCATATGTGACTGCAAGTGCCGTAAGACAT
ACTCCTATACAAGTAGCTAGGGTGAACCTGATTTTTTCAAATACTCTTTGGATTTACTTT
TGAAACATTGCTACTACTTGCATGGCCATGACCCCACGCAACTCCACAAGACGCACCTTG
TGTGAAATTGTAAGCGCAGCAACACATGTGTCTGGAGAAACCAGAAAGATGTCAGTTGTA
AGCACGGATGGGCGTTATGCAGCTGGTTAGGGCCGCACAAGTCATCTCTCCGTAGCTATT
GTCACAATTGTAAGCGCGGATGGACGTTATGCAGCTCGTTGGGGCCGTACCAGTTGCACA
CTCCAGCTGGTGCGGCCCCAACCAGCTGCTTAACGCTCATCGGCGCGCGCAAGCATCGTA
ACCCACACGCAACTGTTGTAGGTTTTTTCTTTCTTCTTTTTTCTAGAAAATCTTTGCTAC
TTATTACACGCGTGGCATCTCAGTGCAAAACAATGCATTTTACACACTCCAAGCCCCCAG
GGCAACAATACCTGCATAGTGGTCATCCACGCACAATTGTGCATGATACATCCCATGCAG
GGGCGAACCCAGGATCAAATTTTAGAGGGGCCGAAGATGTGTTAAATAAGAAAAAATATA
TTTGCTAAGTGGGGACAAATCATTATTTAGCTTGGCATATTACAAACACAAAGAAAATTG
GGTGGGGGCAGCTTCCCCCATTGCTTGTATGCTAGATTCGCCCCTGATCCCATGTGCAAT
TACAAAAGCAGGAAAGTATAAACAACTGAATGAGCCCGAGCTTTAGAAATATAATAGGTT
TTCATGTATAAGCAGCCCGAGCTTTAAAAATATAATATGTTTTCATGTACTTTTTTTAAA
AATAGGAACAAATAAGGCCAGCTAGAAGATTTTTTTTTCCTTCACTAGAAATGTGCCTGG
ACTGTTATGAAAAAAATCCAACTAAAAAGAAGGAAATTGCAACAACTAAAATATAATTGG
CGCTTATAGCTCCCTCTCACACGCGACCTATATGGGCCGCGGCCCACGATCGCATTTAAG
CATAGATTGTTAGACTGCTGCATTGACTTTGACCATGGACCATGGATGTTAATTGTTGAC
CTTTTTAAAAACAATCCTGACCTGGAAAATACTTCACGAAACAAATAAGACAAAAAATCA
CGAATTTATCAAATATTTTTAAATCTGAAAAAGTTTGTGAAAATAAAAAAAAGTCACGAC
TTTAAGAAAACTTCATAATATTTTTTAAACAATCAAGAATTTTTAAAAAGTTAGCTAATT
TTCAAAATTTACATGTTTTATAAAAGTTCAAATTTTTTTAAAAGTTATCTAAGTCGAAAA
AGATTGAAAATTTGAGAAAACTTCACAAAAGTTTGGAAAACATAACGAATTTAAAAAAAA
GTCCATGATTTTTGAAAAGTTCATAATCTTGAAAAAGTTTTAGAATTTAAAATAAATTTC
AGAGAAGTTCAAATATCATGAATTTCGGAGAAGATGCTAAATTTGAAAAATTCATGCATT
TGAAAATAAAATAAAAGAAAAAATGAAAAAAAAACTAAAACCGGAAAAATAAAAATGGGC
CAAGAATGCAGAAAAAAACAAAGAGCAATGTGAAGCTCTAGAAGCTTCCCAAAACCCCAT
TGGAAGGTTCAGAGAAACTTGTCTATATGGGCCCGCCCAAGAAATTTACCGTTTCCCCCG
AACTGGTGCTATAGGCGTCAAACAGGAGTTGTGCCCAAACTTTTAGAACCAAAGGAAAAC
ACAATAACAGTCTTATTTTATCAACCGACTGAGCTCTGGACGCTTCGTTATTTTTTACAC
AAAATCAGTTTGTAATGATACTGCTGCAAAAATATTTTGTCCATTTTAACAAGTATATTA
CTGAATATTAGCACACCAAATTAAGGTTGGCGCTCTTTTTTTTTCCTTCTCCGGTTAGGC
ACATCGGTAACAAATCAGGTGTCTTGCTTTTTCTTGGACCAATAATAAGAAAAGCACAAA
CAAAAGTGAACAGATGACCCAGAAAATGAAACAGAGAGGAAGCTTAAAAAGGAAGCAGAG
AGGTAACCAGGGACATAAACAACATACCGTTCATCCAGTTCTTGGGAGGCTGGAAGTGAT
AGGCAGTCCTGTACCTCGCGCTGACAATGGAGGGCACCTTTGGAGAGTGGGGGTAGGAGA
AGCCTCCCTCTCCATTGCTGAAGGGCCATGCCTAAGAAATTTCGGGGCCAGTGCGAAAGC
TCAATTAAGTCAAGCCCTACTTATATTTGGAAAAAGAAATCATGCGAGACAAACTGAATA
TTTCGATAAATCATGCTCATTGCTATTATAGCAGCATGAGAATATCGATCCGTCCTGGCG
ACCATTTGTTTTGCTATTCCTAATGCATTCCAAAAACCAGTTTGTATATAGACACCTATT
GGAAAAAGACACAACCCTGCTGCAAACCTACTATATATAGTACTCCCTCTGTCCCAAAAT
GAGTGACGCAAATTTAGTACTGATCGAGTTAGTATACTAAAGCAGCGACACTTATCTTGG
GATGGAGGGAGTAGTATAGTATTTTCAATATGAAGCTTAAAGAGCAGCATAATTACGATG
GTCATGTTCTTTGTTGTTTGACCAAGTGGTTACTATAATGTTGGGTTCTCTGATTCTCAT
TTTCATGGTGCAGAGCAAGTCTCTGAATGGAACAATAATTTTTTTTAATGATTTTTGTAG
CTTGTGTGGCTTCTGCTGATTGAATTATGATGCCTCTAACTAAAGTAAACCTGAGCAGCA
ACCATGGCACAAATCTTTCACACATTCCATTCCACTCCATACATCTTGAGCACAAGTGAC
AACACATAGACAGACTAACGGCATGAACCAAGTGTAGAAATGACTAGAATGTGAAAGCAG
AGTGTCTCAGAGTTACTGAAGCGCAGGCAGCGAGTAATTAACCGAAACAAGAGTTACTGA
AGCTTACCAGGGTCTGCAAAAGAATGGTGGTGAAGAACACACACGCAAGTCGAGCGAGCC
TGCAATCAATCAATCAATCAGGCAACATTGATTCTGTGAGTGAAAGCAAGACAGAAAACA
AAACAGTCGTCGAGTGGTTACTTAAATGAAGCTGACAAACAATCGGTTAATGGACGATGG
ACTTACACTGTGAGCAGGGCACACATCAGCATCACCATCCACGCAGCAGCAGCAGCACGA
AGGAGAAGGACCAAGACCAACACATACACACACACATGCAAACAAGTCAGTCACCTTCCA
AGGGGCCGGGAGGGGAGAGGTAGGCAGCTAGCTAGGAGTCCCTCACCTTCCATGGCCATG
GCCATCGCCATCGTCGTCCTCGTCCTCCTCCTCTCGGCTTCTCGATGGGCGTCGTCTCCT
CCTGCACCGGAGGAGAGTGACAGAGATAGACGGAGGAGGAGGGGAGGGAGTTGTTGAGCT
GTTTCTGTCCGCTCCAAAAATATCTATCCGCTTTCCCTAAAAAGGATCACGTTGAGATCT
GTCTTTCCCTTAGAAAAATAGTGGTAGGGTCTTTGTCGTGGGGTGTGTTGTGTTACAGTT
AATCTCGTGCCTAACAAATGTCTCGTCCTCTAGCTGCGGCATGTCGGCAATGATAGCAAA
AATATCAGAGCTGGTCCGCAGCATAGATAGTACTCTCTTCGTCCGGAAATACTTGTTTTA
AAGATGAATGTATCTAAATTTATTTTAATTATAGATACGTTCATTATATTTATTTTTAGG
ACAAGTATTTTTGGATGAAGGAAGTAGCTACCTGTAGCGCCACAAGCTGGGCTGTAACTC
GTACTCCTTCGTTTCTTTTTCTACTTTGCGTTTTAGTATTGTCTCAAGCCATTTTTTTTG
TAAAATTTGATTAAGTTTATAAAAAAATTATCAAAGTTTTTAATATCAAATTAGTATCAT
TAGATTTATTATAGAATATTTTTTCATCTCATGTTCTTTTAATATATTAGCGCTTGCGTT
TGTATTGTGTTTAAAAAAATTAATACACAGCCAGAAAATGCCTACAAGCAAGAACATTAT
ATATTTTCTCTTCTAAATGTTACAAATATGTAAACCGTAAATACAAATATCACTCGAACC
ACGCACCTCCGTCGCCTGAGCCATCATGAAACACCGTCTTGTTTCCACACTTCGAGTGCT
CCAACAACCGTACCATATCACAACAATTTGTATACATATTTATATTCTCTTCATCCGTGA
GTCCCAAAAAAGTGACGCCCACCGTGTTTTGGGTTATGTTGCCGAACCTAAATGGTTGCA
TCCAAATCGGGAAATGCAAATCCTCTTACATCCTGTTATTGTACAATGTCAGGATATGGC
CCGCAAATTAATCGACGAAAAATGAAATCAACACGGGAGACACAAGATTCTAACATGGAA
AACCCCTCCAAGGCAAAGGAAGAAAAAAAAATCATAGACTCTAGCCAACGAACTTCACTA
TATCGGAAGAGGTTATGAACATCGAGGATTTAGTTACAACTGGATGTTGGGGATTTAGTT
TTAACTGACATACTTATCCCGTGCGGCGGCTTAGAAGAGGTATATATAACATAGGTGACC
TAGGTCAATAATAATCTACTTATCCGCTTCGGTCCAAGGCTACCGGCAACGGATCACACT
CCACTCGCTTGTCAAAAGTTAACATTTATCTCTCTATTCTCTTCATTTGTGAGTGACAAA
AAAATGCCGTCCACCTCGTTCTGGATTATGTTGCCGAACCTGAACCACTGCATCCAAATC
ACGAAGTGCAAATCTTCTTGCAGCTTGTTATTGTACAATGTTAGAGATACAACACATAAA
TCAATCCACGAAGAACGAATCCACACAAGATTTTAACCAGGAAAACCCCTCCAAAGCGAA
GGGAAAAAAACAAATGACGCCAACAAACGAACTTCACTATATCGGAAGAGGTTACAAACG
TCGGAGATTTACATCTAGCCTACATATCCCGTGTGGCATTTTATAAGAGGTATATATATA
ACACATGTGATCTAAGTCAATACTCATCTACTTATCCGCTTCGGCCAAAGCGTAGCTACC
GGCGACAGGCCTCGCTCCGCTCACTCGTCAAAAGTTAGCATTTATCTTTCCATTCTCTTC
ATTCGTGAGTCACAAACAAGTGACACCCACTTCATTCTGGGTTAGGTTGCTGAAGTTGAA
CCGCTGCATCCAAATCGGGAAGTGCAAATCTTCTTGTAGCTTGTTATTGTGCAATGTTAA
GGATATGACACATAAATCAATAGACGAACAACAAAATCAACATAGGAGGCACGAGATTTT
AACATGGAAAACCCCTCCAAGGCGAAGGGAAAAACTCACGGGCGCCAGCTAGTGGACTTC
ACTATATCTGAAGAGGTTACAAACACCGGGGATTAACAACTGATCTACTTATCCCATCCT
GCGGCTTCAAGAGGTATATATAACACATGTGACCTAGGTCAATACTGATTTACTTATCCG
CTTTGGGCCGATCCTACCGGCGACGAGCCTCGCTCCGCTTGCTCGTTAGAAGTTAGCATT
TATCTTTATACTTGAATTTGGAACATAACATAACAAACTTCACCATGAGACAAAATTCCA
TCTTGTAGCATGAATGAGAACCTTCTCCCTGAACAACAAAGAAACCACTTTTAGCACCAA
ACAACCACTAGGGCTAATGATTTACACCAACTAAGTCCGAGCAACGCTCAAACTTAGTAA
TAAGAACTAACTTTGTTATCAAGATATCAGCAGGATTATCATGAGTACTAATCTTCCATA
CCTTAATTTTACGTTGCTCAACAATGTCTCGACCACAATGGTATCTGACATCAATGTGTT
TTGTTCTCTCATGGAACATTTGATCCTTAGTTTTCCAAAAAAGTCAAATGTAACCTATGT
CTGACCAATTTTATAGCAAATTATATAAAGATTTACAATAGTAATATATAAAATATAAAA
ATATACTTCATGGGGAATCTAGTGATAATGATGTGGTATTCTAGATATTGATATTTTTGT
CTATAAACTTGGTCAAAGTTAGACAAGTTTGATATTTTTATAAATATAATAGACCTTATA
TTGAAGATTGGAGGGAGTATATGGCACTCTGACTGTCACAAGATAGATTAATGCAATAAT
TATCTCCACGAAAGCTCAATATACAAATCTTTCAGCCAAACTAATTATTTACATGCTTCT
GCAATAGCCATCTATTTTGCTTCAGTGGTTGATACGCCTCCGTCGTATCTANNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAACTAACCCTGACT
AACGCTGTTTTTAGCAGAATT