morexGenes - Barley RNA-seq Database

Contig contig_351166
Source Contig contig_351166
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_351166 (7039 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_351166

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_49936	1	1859 bp	MLOC_49936.1	Available	Available	LOC_Os06g35650.1, FRAME:-3, EVALUE:0.0, 13106.m03681 protein reticuline oxidase-like protein precursor, putative, expressed
CDS Structure of MLOC_49936

Contig Sequence (7039 bp)

>contig_351166 7039 assembly3_WGSMorex_rbca.fasta
GGGTGGGGGGGGGGGGGGGGGTGGGCTGGGGGGGGCCGGGGGGGGGGGGCCAGGGAGGGG
GCGACGCGGAGGGGGGGGGGAGGGCGGCCATAAAAGGCTGGTCATAGGGAATAGTATCAT
ATACTAATATGTATGATACTAGTGTATGATAATACACTTATAGTGCATATTATCATACAT
TGGTATTATAAGATGGTTCATTTAATTAGTGTCATACATGACACATGAGGCATATCATTT
AGGCCCTGTTTGGAACCATAATAGATTATAATAATCTAGATTATGAAGGTAGATTATATA
ATTTGATTTATAAAAATAATCTATATGGGCACGTTTGGAAGCTGTATTACATAAACTGTA
ATCCAGGTTTTACATTGCATAACGACTTGTCTGCCTTTTTTTTTAAGAAAGAGGAGGGTG
GCGGTGGCAGGAATGTAATTATCTCCAACTTTACAAGGCTAAGGGTCATTAGCAATCCAT
AATCTGATTTTAGCTGGGGTAGAGTAGATTGTGAGTTTTTAATAATCCGTCCATCTAGTT
TTTATAATCTATACCATAATCTATCCTGTTTGGAGACAAAATAAATTATAAAAACTAAAT
TATACTCCCTCTGTTTCAAAATATAAGACCTTTTAGAGATTACACTACGAGACTACATAC
GGAGCAAAATGANTGAATCTACATTCTAAAATATATCTATGTACATCTGTATGTAGTTCA
TAGTGCAATATCTAAAAGGTCTTATATTTTAAAACGGAGGGAGTATAATCTAAGTGGTTC
CAAACAGGGCCTTAATATGATACGTTGTTATGGTATGATATGGTATCATGGTATGATAGT
TGTACCTTTCTTTTTTCATTTAACTTTATGCCATCAAATTAAATTAACTAGTTGGCATTC
ATGATATATATTTTTTTCCGAGGGAGCATCCACGATACTAATTACGATGCTTCCATTGCA
GACAGCCTAAAAATCTAATTGATCAGTTGTATTCATGAATGTTGATAACCTCTCTTAGCC
CATCGGAGTTATTAGCAGTCAAAATATGATCAAACGCGCCTGATTTGCACAATTTGACAC
CTAGTTTTCATCCTCATAAGCTCATTCCCTGATCAATAGAAGTGGCGGCACACTCTGCTC
GTTCCGGAAGTAGTCGCTAGCATCCACCTTGTGCTTGATCTTGGTGAGTCTCTTAAAGTT
TGCAGGGCCGAAATACCTCTCGCCCCACACCTTGCCACTCTCGTAGCTCGTCACGCCCCC
GACCACCGTGTTCACGCCGATGTCGAGGTCCCGGTAGTTCACGTAGGCACCCCTAGGCTT
CTTGCTCACGTACGGCGCCATGAAGTCGTACAGGCCGTGGAGCCAGTTCGGCATGCCCGC
CGCCCCGGTGCCGTTCCAGAACTCGACGTACTGGACGTTGTAGAGCACGCCGCTCCGGTA
CGGGAACGGCGTGTCGGCGGCGGCGATGCGGCTCATCATTCCGCCGTGCGGCTCGAGGAT
GAGCTGCCCCACCGCCCCGCCATCGGGCCAAAGGAAGATTTTCTCCCATGTGTCCCTGGT
GAGGGCTTTCTTGACGTAGTCCGACTTGTTCTTGACGAAGGGGCCAATGGTCATGGACCG
GTTGAGAAGGAGCTCCTCCAGCGGCTTGTTGTTGCTGGCATTGCCGAAGTATAGGTACGC
CTTGTTCTGCAGCCAGCTCATTTCGAGGCAGTCATCGAGGGTTAATCCGAGCTCCGGGAA
CCGGCTGTGCATCGTCGCCACCACCGCGCTGCAGTTGCCGAGGTGCAGGGACTGGAAGCT
GGCCTGACGCTTTTGGACGACCACACGTACGCTCAGGTCGTCGGGGAGCGCCGGCGCGAT
GGTTTGCCATTTGGTCACCGCGTCGACCGCGCCCTGGTCTATGGTCTTGGTGACATCGAA
GAAGGCAACCGTGGGTGGGACCGGCACGAGCCTCAGCTTCCAAGACAGCACGATGCCGAA
GTTCCCGCCGCCGCCGCCGCGGATGGCCCAGAAGAGGTCGTCCCCCATGGCCTTCTTGTC
CTCCAGGAGGTTCCCGTCGGCGTCGACCATGGTGGCGTCGAGCACGTTGTCAGCGGATAG
GCCGTGCTTGCGCATCATCAGGCCCATGCCGCCGCCGCTGATGAGGCCCCCCACGCCGAC
GGTCGGGCACACGCCAGCCGGGAAACCCAGCCCGGGCTCCGCCGTAGCGACGCGGTAGTA
GAGCTCCCCGAGCGTGGTCCCGGAGTCGACCCAGGCGGTGGCCGCGCGCGCGTCCACGCG
CACGCCGTTGAGCTTGGCGAGGTCGATCACCGCGAACTTTTCGCGGCTGGGACGGCCCGG
CATGTACGAGAGGCCCTCGTTGTCGTGCCCGCCGCTGCGCACGCGGACGCGCACCCTGTG
GCGGCGCCCGCAGCACACTGCGTCCTGGACGTGCGACGCGTTGGTGGGCGTGACGATGCA
GAGCGGGGGGCTCGCCGTCGCCGGCGCCACCAGCCGCGCGTTCCTGATGGACGACACGAG
GAGCGGCTTGAAGGAGGGCGAGCTGGGCGTCAGCACGAGCTGGCTGGGGATTTTCCTCGA
GAGGCACCGGAAGTAGTCGCTGTGGTTGGATTTGGAGGACGTTGCCAGGGATTGGGAGAA
ACCCAAGATGCAAATTGTGAGCACGAGCGCTACCCGCGCCATTTTCGTCGTCCACTAACA
CCGATCGTGTTGTTCTGCAACTTTACCTCCTTTTATTTATAGTCCATTGTGCATTAAATC
ATGGCTAAACTTTTTAGATGGTCATCCTTATCTTGAATGGCTAGTAACTTCCATACATGA
AATATGCCTGCCTTTCTTGGCCGGTGTTTGATTATTCTCTCCCCAAATCAAGAAGGAAGT
AAATGTTGCATGGGTCTCATTCGGCTGCAAACATAAGGCCACTAAATTAATTATCAACTA
ATTAATCGAGGCCTTAGAGCATCTCCAACAGCCGCGCCAAAAAACACGTCCGCGCGCTAA
AATAAAGTTCGCGCTCCAGTGGTCGCGGCAATTTCGCGCGCGGGGAAACGCTTGGTCACG
CGAGAAAAGGCGGGCGGGCACGCGGCGTCCAACGTGCCTATAAAACGCAGCACTCGCCGC
GCGCACTTTCACCGAGTCTCAGCGCCCATGTCCCGCCACGCTCCCTCCCTCGCATTGCCA
CGCGCCCCTCTGCCTCCTTTCTCTCCACGCCGCCGCCCCGCCAACATGCCGCCACGCCGT
CATGGAACTTTTGGGTACCGCGGCGTCCGCGCGCGCCCCTCGGGCACGTTCTACTCCGAG
ATCCGATCCGGCGAGATGCGCCTTGGTCTCGGCACGTTCGACACCGCCGAGGAAGCCACC
GCGCGTACGACGCGACGGCGTGGTGCCTGAACAGACCTTGAAGGGAGATGAACTTCCCCG
AGGTGATGACGATGGAGTATCGCAGAACCTTGCGCCTCGTCCACGAGTAGTCACCGACGA
GCACCGTCGTCGGAACCGGAGGAGGGAACGTCGTCTCCGCATTGCTGAGATGAACGAGTA
TGCCATGAAGGCATGGCGCCGACAGCTCCCGCAGGACGTCCTCGACGAGCGCCAGTTCTT
CGTGCAAAGGAGGGTGGAGAGGGCGGAGCAAGCCGCCTATCGTGCAAATAGGCATACGCG
GAAGCAAGTCGCACTCTTTCAGATGGAGCTGAAGGAAGCGTCGACTTGGTCCTCCTCCGA
CGAACGCTGGTGTGATGCCTTCACCACGACGGAGGAAACGGACACCAGCGCGTCGGAGTC
CGATGACGACGATGAGTAGTTTTTTATCGGCTTTTTTATCTATGCTATGCTATGTAGTTT
TTTAAACTATCTAGACTATATACGTAAATATGTTTTATTATGTATCGTTTTTATCCTATG
TGATGAAAAATGTGCTTAATTTGCCCCGCAAGCGCCTCATTTTTAGCCGTCCGCTGGAGT
GCTGCACACGTGCCTAATTTTTGGGCTTCCGTTGTAGCCAGCACTCGACGCCGTGCTAAA
TTTTAGAATGGGCGCGCTGTAAACAGGGTATTTTGTGTGCGCCGGGTTGGACGGCCGTGT
GACATGCTCTTAATTTGGTCAAAGAATGTATTTTACTACACATAGACATAACTCTAATAG
AGTACTCTCTCTATCACGGTTTAGAAGGTATGCTTAAAATTCTCTAAAACCTTGGTGATT
ATTGATTGGTTGTGAGATAAGTTAAGATATAGCATTCACACTATGCATGCATATAGAACT
ATTATAACGAAGTACTAATTAGCTGTTGGAGTAAATGTTATGCGTCCTAAACTTTGAGTA
TTGTAAAAATGCATGTAAATTTAACTATGCCTTTTAAACTATGACGGAGGAAGTACAGTA
AGTTATTGGTTATGTGCTAAAAAGGAAGGACTTTTATAATCTTACTTTTTTTCCAGGAAA
AGGACAAGCACCATATGTTAAATAAAATCACCCTTACAAGGAGTTTGTTATAAGAATAAC
AAATTACGGTCAAGTCCTTGCAAAAATATGCATCCTCTGGTGGCACACCATGAGCAAAGC
TCGTTGTTGTCTGTCGGCCTTCGACACACCTGAGCAATCTTTTTGATACCCAAGGGCTCG
TTGAAGCAACAGTTTGGGAGTCATCGACCGTATATGAACTCGTCGAAACTCCTTGATTAC
GAATGAAAACGCGAGGCACAATTTTCTTTTTCCATCCATTCCCACTTTCAAATCTCTTCC
GTCCGTGACACATCTCAACTGCAGCAGAAGCCCACACCCCCGACCTCTTGGAGGCACCGT
ACAAGAACTCCTGGCTCGGATCTAGCTGCATGTAGACGATAGTGATTTTGGGATCAGCTG
AGACCGGGCTTAGAATAGGATTTTCGCAATGCTAGATAAATCACTACACAAGATAAGTGC
AATCTGAACTTCTTCAGTTTTACGGTAAACTACCGATCGATGATGTTGACCAAACAGGAT
TCCCGCATTTAGAAATGTTGTTCTGTTATGAGGATGAACAACAAGAAGCCTCATGACGCC
TGAAGAACGGTAGGACACAAGCGGAGGACTTGCCGATGGCTAAAATGTGGATGTTGGTTG
CTCCCACACACAATTTGCCACACCATCAGCAGTATAACGCCACGCCATTGCAACCTCCGA
TGACCGCGGGCTTCAATCAACAGCTCAACGACCTAGGTTACTGACATCTTTTGATGAATT
CTAGATATTGTTTGGCGGGTTGACACATGTGTCTAATCTATATAATCTCCTGGACTCCAC
AAATTGAATCAAAAATCAGAAAACGCATTATAAACTGCTTTGCTACCTCGCAGAAGATTG
ATTTTCTAAGTCTTACTTAGTCCGACGCAAGTTGTTAACAAGGTGAGTTATTTCCACTGA
ATAATGGGCTTTGATTTGGTTTTCTCCAAATCTCACATGAACCAAACGAAAGTGAAGATG
ACGGAGTACTATCATACAAGAATAATGCAAATGACACCCATGAAGAAGGATACATATATA
AAGAGCTGTTGCATGCTAGCCAGAGTACATCATTTTGGCATGTTGCGATCATCCATTACA
CACTGAGTCAATTTATACAGGAATCTTACCAGCCTGAAAATCAAAAGCACGGGATGCATG
CGTGAAGATGTAGGCCATCTAAATTGTTTTCGCATCACAATCCACATTATGCTGGCTGGG
GCCCTTGTAAATTTGTACTTATGAACGAATTGTACCGAATAATAGGCATCCATGCAAGGA
ATGCATGAAGCAAAGCATCAAACAAATAGTAAATAGCAGATTTCAGATTCGGTGTAGCTT
CTAACGAGAAAGGCGCGGGCGCGTCAGTCATGTCGGAACAAACGATCGTAATTCACCCCA
AATAAATCACAAATCCGGACGAACACTAGATCCCATCCTCTCTCTCTCCCTCCCTTTCCT
CCCTCTCTCTCTCTCTCTCTAGTCCCCTTCCGATCTATGGCAAGCGACGACGACAGTGCT
GCTTTCTATGGCGGAACCATAATTTCTGCTTGGGCACCCGTAGCATGGTGACACATTGTA
GGCGCCGACATGGACAAGGAAGACCGAATCCGCGGCACGGGCCACACGGCACGAGCGGTA
GCGGGCAAAGGAGATTGCGGCGGCGGGTGGGCCACTCAGCAATCCACCAGGCAAGCACAT
GCCCATGGATCCAGAGGATGCAATACTCGCGTTGGTTCTCCGAGGCACTTAGGTTGTAGT
AGTTCTACGATGACCGTAAGCACATACTATAAGATGTTATCCTTCGTTCCACTTTATACT
CTTGTCACACAGAACCACTACGGCACCTTTTGAAAGAACCAATGCTAGATAAATCACTAC
ACGCAGCGGTAAGCGTGATATGAATTGTTTCTTCACTTTTATGGCAAACTATTGGTTGAT
AATCTCGAAGAAACAGAGTTCCAACATTAAGAATTAATGGTTGTTCTGTTCCAAGGATGA
ACACAAAAAAATTCTTGTGACGGACGAAGAATACTAATACGCGTGCAGGGAGGTTCGCGA
TGACTGAAATGTGGACGTCGGTTGCTCCCGCACACTCCTTGATGTTAGGAATAAGCCGTG
ATCGGAGGCGACGGGCGTGTGTGCGCTTGGTGCGGTCCGAACACGGGCATGCCCGTGCTC
TAGTGCGGTCCGCGTGAGTACGTGTGTGCGTGCGTGCGTACGGGTATGTGTGAGTTCACA
CAATAGGCGTAGGGGCGATCACGTCCATGCACGAGACCCAGCCGCGATGTGCGCGTGCGT
GCATGTGCGTGTGTGCGCGTGCGTGTGCGTGCGCGTCGGGCGCGCGAGCTGCGGAGTGTG
GGGCGTGGTGAACGTGGGAGTAGGGGGCGTTGGAGCGCGGCATGGGTTGTCCGTGCACCC
GCGTATAAGACCTTCTCCCCCCTGTGTATTGCGGCAGGGCGATTGAGTGCGTGCTCGTGG
TGAAAAATACTCCCTCCGTTTCGAAATATAAGTCTTTTTAAATTTTTTACTAAATGGCTA
CATACGAAGCAAAATGAAT