Contig Data
morexGenes
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Map Locations of contig_350414 (6031 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_350414

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_49895 1 1108 bp AK358591 Not available Available None
MLOC_49894 2 1323 bp AK354465 Available Available None





CDS Structure of MLOC_49895






CDS Structure of MLOC_49894






Contig Sequence (6031 bp)

>contig_350414 6031 assembly3_WGSMorex_rbca.fasta
ATCAGGCCCCTCGTACGTGACGACATCCCCTCTCATCCGGGCACCTGACCAACGAGTTCC
AGGTTTCAATCGCTGTGCTGAATTGTGCGTTTGTTTGACGTGTGTGCAGGACATGGCGAA
GCGCCCTCGCCGGAACCGGAGGTCGCCGGCGCTCCGGGCAGCGTTCCAGGAGACCAGCAT
TACCCCCGCGAACCTCGTCCTCCCCCTGTTCATCCATGAAGGTCGGTGATTGGGATACTG
GAACATGGTTGGTGCAACCGCGCAAGCATAACTGAGATTGGTGGGTTACAGTTTGGCTCA
TTGGTAGTATTTTGGTACTGATGTGCAGGTGAAGAAGACACTCCCATTGGAGCTATGCCT
GGGTGCTTCAGGCTTGGATGGAGGCACGGGCTTCTGGAAGAGGTACCGAGCTCACCGCAA
TTTACATGATTTGGTGCCCTGAATCATGATACATTAGGTGACGAGTAAGGACATTGCTGT
CCATATATTCAGCTTCAACATCACCATACCAGAAACAATGCACGTGTATCCATAATTCCA
TATTACAATGATAGTTAGTAATGCGCTGAAAAAATAGTAACTATTGGCATATCTCTTTTT
CTAGGCTTAGTTAGCTACATCTGTCTTCAGACACATTTGTGACCGAAGAAAACAGTTCTG
TTGAGCTGCTATTTTCACAGGTTTACAAGTCACGGGATGTTGGTGTTAACAGCTTTGTGC
TATTCCCGAAGGTTCCTGATGGATTAAAGGTCTTGCCAGAAACATAAATTCTTTTCGTCT
AATTGAATTGCGTCGGCTTTATGGAATAATATTGCCTTCCTTGTCCATCAGACTCAAACA
GGAGATGAGGCATATAATGATAATGGTTTAGTGCCTCGAACAATCCGTTTGCTCAAGGAT
AAATACCCTGACATTGTGAGTCATGTGTTTCATTTGAACAGTCATTGTTTCATTACATCA
TTTATGCTAAATGCTAACATGTTCGATTCCCATCATACTACTCGTTTAGGTTATCTACAC
TGATGTTGCTTTGGATCCATATTCTTCTGATGGTCATGATGGCATTGTGAGAGAAGATGG
TCAGAATTTATTCCTTGCAGATTTGCTCTCAGAGTTCATTGCGGTAGTGATATCTTGAGA
AGTTTATTTGAGATATTAATCATATTAATGCTACTGCTGTACTGTCGTACCTATTAAAAA
AAACTCCATTATCAAATTCTATTCAGACCAGTAACTGACCTGATTTAGAAGAATGATGAT
AAAAAAAACTGTGTACCCCTTTCTGTTCATGCTTGAGTTTCACTATTAGAGTATCCCTTG
TTCACTCTGGGCCTCAGCCTCTTTTTTTTTTTGGATTGTGTTGGATGATTTTTATTGGAG
ATGGCAGTTTTTACATTTTACATCGTAGTTTGTGGGATTGATATTGATTTATGTTTTCTG
AATCAAGCAGCTTTGGTGGACTTTATGTGACTGATAGATGAGTTCGATGAACGTTCAATT
GGCCTGATGCTGTTTGTTTAAAAATGAAAGATAGAACATTGATATGTTACTTTTAAACTT
GTACATTTAAAGAAAAAGACAGTTGTAGTTTCACCCGTTTGCATATGAGATGAGGACATT
AATTTCCATGACTAATATATTTGCATGTTGAGTCACTTGGATGTGTATTCCATTTTAGTA
TTTCGTATCAACAAATGTACATTGGCACAAATATCTTCTTTTTCTCTCGTTAAATTGTAT
TTATGGATAGGCATGCTTCCACCTAATTGTTGGCCTTTATCCCATTCCAGGAGTCATCAT
GAACGATGAAACAGTTCATCAGCTGTGCAAGCAGGCAGTTTCCCAGGTTCCCTTTCTGGA
ATCTACCTTGTAGTCATGCCTTAGTATATTTTTGAAAACAAACTTATAGGAAATGTTGCT
GTTGCTAAATAGGCTCGAGCTGGTGCTGATGTTGTCAGTCCTAGTGACATGATGGATGGT
CGTGTTGGGGCGATTCGGGCTGCATTAGATGCAGAGGGTTTCCATGATGTCTCCATCATG
TCCTACACTGCAAAGTACACATCTATCCCGAAATAGAACCTATTGTCATCTTATTATCTG
ATAATTTCCTCTCTCCTGCATTTTAAAATGCAAGTGCGATGGCATGTATGATGTACGTGA
TATGTGACTGCAGGTATGCTAGTTCGTTTTATGGTCCATTCCGTGAAGCTTTGGATTCAA
ATCCACGATTTGGAGACAAGAAGACGTATGTACCTAACCTTAAAGTTCGTAGTTTCATCC
AGTGTACAATTTAAAATCATTATATCTAAGTGACCTAGTACACGTTCTGTCGATTCTTAA
GTTATCAGATGAACCCAGCCAACTACAGAGAAGCCCTTATAGAAACTGCAGCAGATGAGG
CAGAAGGAGCTGATATTCTTCTGGTAATTCCGTTACTGTGTACACAGGGTGCCAGATTAT
CAAAGTCCTTACGCTTCATTGCTTGTGTCATGTACTAAGAGCCATGTTGACATATGGCAG
GTGAAACCCGGATTACCATACCTTGATATTATCCGACTTCTACGGGATAATTCAGCCTTG
CCAATTGCTGCATACCAGGTTAATTTGCAATCTTTTTACCTGCAACTGTATCTTCCATAT
TTCACCCGAAAGTAGAAACTATTTTCTTGCCGTTAGTGCAAAGTTATCAATAAAGCCATT
TTCAGGGCTATATGTTTTTTTCCCTGAAGAGGGGATATCTTCGGCCTTCAGGGTCACATT
GTACTGCATAATACAGTCTGCTAATTGCTGCGCACAAAGATTTATCTTGTTGTTGTCTCT
TTACCCAAAGTTAGATTTAGCTTGATGATGTTTAACATTAACAAAGCACTGGCGGACAAA
TGGTCTTCAGCAATAAGCAAATCTAGGCATTTTTCGATATGGTTTTCTCATAAATAGATT
TTGGCCTTCCCTTGAACCCTGTCCATGTCTATAACACCACCCCTGGGAATCCCCTTGAAC
GTGTCAATTCTCACGTTCCCCAATGCATATTGCCTGCTCGGACATTAACGTCCGTACTAA
TCATTTGAGATGTACCACTCTGTTAAAAAGATCAATGTCACCTTGTTTGTAACCGCATGA
CGCTTGCCGTCTTCAGGTGTCAGGCGAGTACTCGATGATCAAGGCCGGCGGCGTGCTGAA
GATGGTGGACGAGGAGAAGGTGATGATGGAGTCGCTGCTGTGCCTCCGGCGCGCCGGCGC
CGACATCATCCTCACCTACTTCGCCCGCCAGGCCGCCAACGTCCTCTGCGGCACCAAGCG
GCCGTAGCTCATCACGGAAGTCAGTTTCTTGTAGTGGTACCATGGCCATGGCGTATCACT
GCATTGCAGAGCGTGGAGGCTTATCCAGTGGTGCGGCGCGGCCATGCTCTCCGGTAGATG
GAGGTTTATTACTGGCTTCGGTTCGGTGTAATTAACGAGGCTTTGTCCTGAGTACATTAT
TTTCACTCAGTTTTAGACAGTTATTAATCGACTAACTGATTTTTTGAGGGGGGTTTTAGA
ACTGATGAGAGGTTTGCAATAAGGAGACGCTCGTTCGTGATCACTGACAGACGGGCCTGG
CAGGCATGCCTGCGTGGGCTGTGCCGCCGGGTTACACGCATGCGTCAGCTTGACGTTCCG
GTGACATCACCGTCTCTTTTTTTTTAATTGCACGCGACCTGGGGGCACCGTCCCCCTGCC
CCCACTGAGTGCTCTGCTTCCATATTGTCTCTGGTATTCACACACGCACAACGGCACAAC
CCCTGCAGCGCATACAATAGCACAAGCACATCCAGAACCAGACAGCATCTGCACAATCAC
CGCTCCTATCATTAATTTTCACACTGGCTCGTTTTTACTCTGAACTCAACTTTATACTAA
ATTTAGTATAAAGTTGAGTCATTTATTTTAGGAAAGAGAGAGTAGAACCATTTCACACTG
CCTGCTAGGAGGAGTAGTACTGCGCTATATTTTCCTCGCAGAAATGAAAATATAATCTCA
GCTCTCAGCTCTCCTCGTTTCTTGTTTGACTATTTTCATGCCATGTGTTTGGTTAACCGA
ACACACATGCCTCCTATGTCGTGCACTCGTATTCTTGCCACCATTTGCTTCATCAACAGA
TCAAAATGCCCGGATACACTTGTTGAGAAGTACTGTAGCTAAGATGGTTGTCGCTACGGG
CCGGGATCGCCAGATCAGATCATGAGAGCAAGGGCAGGTCAACACTAGTTGTTGTTGAGG
CGGACCCAGTTGACCCAAGGCCCCCCAAACCAACACCCGGTCACTGGACACTGGCTCACT
GCTTGCTTTCTTCTTCTTTACTAGCATTTGGCAAATGGCAGGTCATGACCAAATCCAAAT
GTGTATTTTGCTCCGTTGGACATGTATCTTTTTTCCTACCCATCGAACTACACATTTCCT
TTCGGAATCCCATCTGAAAACACGTGTTACTGCATGTTTACAAGATGTCCGTACTACTGT
ACAACTTATTAGTGTTATTTTTTCTTGGATCTGCCGCCGCCCCACGATGATGCCCAGCAG
GCAGCACTGCAGCAGCACCCACCAGCCACTTCCTCGCCATTCACAGTCTCGCTCGCTCGC
TCAGTCGGCCATTGTGCGTCTCCTTCCTCGCCTGTGTGTGGTGTGGATCCCATCCCATGG
ATCGATCGGCACCGACAGCGACACGACTTGTCCCTACCCCGGCTGCCTAGCCTAGCTCTT
GGCGCGTCGCCAATGGCCAATGCCGTCTACCCATGCGTGATGTGGCCGTGCCGGGCCCAC
CATGCACGTACGTACCTTGTCCTCTTCCCCCTCCCCCCCACGACAAGTACAACAACAACA
AGGTGGTGGACGGACGGATGGAATCATCATGGAATGGATGTCTGATCTATTGCAGCACGC
ATCGCCCCGCCCAGCTGCGTGAGCCCGGAAAATACCATGGCCTTTTCATGTGCAGCAGTT
GTGATGACTGATGAGGTAGGGAGCAGACCAACCCGTGTGGCGGTGTGCGACCCGCACCTG
CGCCTGCCTGCTCCCCCGCAAGCACCGCATTCTCATCTTGATCCAATTCCTCTTTCGAAC
GGGGAGCATTTCGATCTGAAGGAACGAACAAGGAGAAAGAGCAAATTGATGCCCAACATT
CTCCATATCATTTTCATCGCTGCCTTGTCCTCTACGAGCAATCAACCCATTTCCAGTTTG
GGAAGCACAGTTTTGATCATCGATCGTGATGTAATAGGCTCATTGATTACACATCCAAAT
TAATTTAATAAATCCGGGCAGAAAGAATACATAGGAGGGGGCCTCTTTCAACTCCATCCG
ATCTCTGTAAGATCGTGGATCAAACACTCGTCGCAACAAATTAAGAAGAAGGAAGAAGAG
ATGGAAAAACCCAAGGTGGAAAAAATACTACTGGCAATGGCAGTCCATGGCAGAGGGAGG
TGAGGTATTATACTGGCGGCGGTGCGGTGTGTTGGCTGCTCCGGCGATGGACCAGGAAGA
GTTAGTTGTACGGCTTCATCGGCGGCGGCGGCGACCCGTATGCCACGCCGTACACCGGCG
GGAACGGCGTCGGCGTCGGCGTCGGGTGCCCGTGCCCGTGGTCGCCGGTGCTGCTGCCCT
TGGACGGCGGCGCGCAGTGCTCGGGCGTGGACGGCGTTGTTGGCCCCGACGGGGAAGACG
GTGTGCCTGGGTGCGTCTGTGATGGAGGCGTGGTCGATGGGGTCCCTGACGAGTGGGGAG
GCAGCGCGTAGCCGGGGTACTCCGTGGGCGGCGACGGCGGCTGGTGGCTGCCGGAGGAAG
GTGGCGTCGAGCCGGAGGGCGTCGTGGGGCCGTACGAGCCCGGGGGCGGCGCGTACCGGC
CGTCTGGCTTGTCGGCCGAGGTCGGGGGAGGCGGCGCGTGGCCTCCTACTGGCGTCGGGG
TGCCTGACGAAGGAGACGGGTACGACGGGGTCCCCGGCGTGCTCTGCGGCGGTGAGTGGG
ATGATGGGGTGCTGGAGCTGGACGGAGGCGT