morexGenes - Barley RNA-seq Database

Contig contig_341980
Source Contig contig_341980
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_341980 (8702 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location
Predicted Genes from contig_341980

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_49454	4	3607 bp	MLOC_49454.3	Available	Available	LOC_Os05g11980.1, FRAME:-2, EVALUE:0.0, 13105.m01298 protein timeless protein, expressed
CDS Structure of MLOC_49454

Contig Sequence (8702 bp)

>contig_341980 8702 assembly3_WGSMorex_rbca.fasta
AGAAGCAACTGTTTTTTCATACATCCCATGGCATTTCTGTCGTAATCACTGGCAACTTCA
AATAGAGTTAAGCAAAAATATCGACATTCTTTATTGATTTCAATTACATGCTGGCAAAAT
TTCCAGCCATTTTCATCAATCATACTTTCTGATATAATGGCTTTTTTAATAGCAAAACAG
TTTTTTTGTAGCACACACAAAAGCTTTGCATATCCTTTTATTAAGGGCAAAACAAACGCA
AAGAAAAAAATATCATGCCAATAAAATTAACTCATGAAAGCAACTCAATGCGGGAATTTA
CCTGGCCTTAAGTGCTTGCAATGTTTCTTCATCAGATGATACTGGATGATTATCGTTGTT
GTCATCCTTACTGCTTAACCGATGTAGTCTTTTCCTTCTGCGCCTGAAAATGCAAGCTAG
ACTTAATGACAAGTAACAACCAATTAGCTATTAAATCACACTAATTTATTTTCAGAATGT
GCTTAGGGCATTGTATGCACTAGTTCTGACATCTTTAACATGCCAAATTGAGTGTTCCAT
CTTACTGCTAACTGTGCATAACTGAATGTCAAGCTTGTAATACAGGTTCACAGCCATGGA
GGAAGAATGGCACAGCTCATCCTTTATAATACTCACCGTGTGCTTTCTGGCTGGGGATCA
TCCAGCATGTCGTTTTGCGGTTGTGCAACCAGACCTTCTGCTGAAAGAGATGCCTCTGGA
ACTTTTGTCCTCCTAGTGACATTCCTGAGACCTAGCTGTGTAAGCTTTCGAGAAATTTGA
GCCGACGATATCTTTCCACTGGGATCTAGAGCTTCAGCAATTAGATGACTGCATTTGCGG
TCATCCTTATATCTGTAACATACAAGGAATAAACATTCGGGGATCATCATGTGATTCATG
CCCAAGTACTAAACATTATTACATACTCATAAGTACAAACATCACTTCTTTCCAGTTCCA
GCTTGGCGAAGCATGTTCTATGAATTGACAGTGATCTTATCCTTTCTTGACATAAATTGA
TCACTTACTTCTCATGAAGATCTCTGATAAGCTTCTCTTGCTCTTCATTAAAAATGGATC
GCCCTCGTCTCTTTGGGGCCTCTTTATTCTGAGAGCCTCTAGATATAGTAGTCCTAAATC
AAGTCAATCTAATCAAAGAGCTAGTCTAGGGGAAGCATCTGTGTTCAAATGCAGAGCTAG
AAATAAAACAAACCTATCATTATCCTCAGCTTCACTGTCTGAAAGTGACAGTAATATGCT
CCTTTTGTCTCTGGCGCCCATGCTCTTCTGAGTATCGCCTTCCCGTTCACCAGAAGATGA
ATCTCCATTCCTGTTCAAGTTCACACATGAATGGAAATAAATTATCTACTAACACAACAT
TAATGGACAATTGGACATACACAAGACAAACTTACTTATCACCATCATATGGTTCATGTG
GTATATCATAGTCAGCTTCATCATCACCAAGAGAATCTGCTATATTTACTGAACCTCCCC
ATCCCTTACTTGAACCAACTTCACTACCCTTACTGTAACCATCTCCCTTGAGCTCATTCA
GTAGATAATCAGCATCAATGCAGTGGCATTCCTTTTTTGTCTTCCAAAAGAGTGTATCAA
CAAATAACAGTGGCTGTTTTTTCATTGCTCTCACCAACTTCCTTACAATTTTAGAAAGAA
AATTTACAATATTTGCATACTCCTTTGAACTCGAAGACTTCTGTTCAGCTAATATATCAT
AGAAAGTAGTCAGAAGCGATAGCTGCACAAGACAGAGAGTATAATGTCAGACCCCAAGAA
AATACAGCCCTGATGAAAAATATATAACAGGAAGCTATTACCTGATATAGCATTGGTGAC
ACATCTAGATCTTCACAGAATCTCCGCAGCATGCATATGATGTAATGGTTTGTTCGAAAG
GAGTTAGTCTTATAGTACTTCAACAACCAGCATATATTTTGGACAACAGAATTGTTGGCT
AGGCTGGATATTAACCGCGATACGTCAAAATCAACTTCACTTGTAGCTGGGGGGCCATCA
TCACTTGAAGAATCTGAAGCATCTTCCTCTTCATTAATGGTATTTCTTTTCTTTTCAGCA
CTGCCTGCAGAAGATGGATCACCTCCAAGCTGTGTGGTACAAGTATCTTCCTCTTCATTA
ATGGGATTTCTTTTCTTTTCACCACTGCCTGCAGAAGATGGATCACCTCCAAGCTGTGTG
GTACAAGTATCTTCCTCTTCATTAATGGGGTTTCTTTTCTTTTCACCACTGCCTGCAGAA
GATGGATCACCTCCAAGCTGTGTGGTACAAGTATCATCCTCTTCATTAATGGGATTTCTT
TCCTTTTCACCACTGCCTGCAGAAGATGGATCACCTCCAAGCTGTGTTGTGCTCTCCAGA
TTAACAGCCGTATCCACAATTGTATCTGGCAGATCTGTGCCATCGGAATCAACTTTCACT
TGCTCCGAGAGAGTAGGTTCTGCTAGAGGATCCTCACTTCCCAAATCTGGAAGTGAATCA
GATGCAGCTTTAGTCCCATCTGTTGGGTCTATATAGCTCTGCTCCACATTCTCTGTTTCA
AGTTTGGTACTCTCATGTTTGTCCTCTGACGTCTTCCTTTTTCTGCCCTTTCTTGTCCTT
TTCGCAACCTAAATTGAGGGGGTGATTAATAATCATATCAAAAAGGAAGGAGGGTCCGAT
TGCTTCAGCATGAAGCTTGTCATCTTTACATAAGCAGTTGAAATTTGGTACAATAAAACG
TAGTTGCTGAAGAATGACGATCCACACTTGATGTAACTTGTGGTGGACGACACAAGCAAG
AATATATTGATGTTGGGACTGAAACCAACATACCCTTAAAGCACCACGTGCTTGAAGCTT
CTCCATCAGCTGTAGCATGATATGAACTGTTTCTAGTAAATCCGCAAGAGCACTGATAAA
AAACAGACAAGTGAAACAATGGTTGGAAGCATATACAAGTAGAGCGTACATTTAGTTCGT
TAAATGAATAAACAAAATATTGTGGACCTCCATTGTGCAGAAATAAACTACATCAAAATC
CTTAAATACCCTTTCAAAAAACCATAGGGTGCAGGGTGCAACAACTTGTACATTCATAGA
TCCCACTTTTATCATTAGACATCACAAGAGTTGCAACTTACAATGTGCACCCATAAGCTA
AATGTTAGAATGTGCACGCACTGGTATTTTCAGGTGCAATGGAGGAAGAAAAACAAATGT
GCGCCCGCTGGGCCCAATGTATTCAAGATGTACATTGAACTTTTGTAAAGCAGGGAAACA
ACTAGAGAACATCCCTAATTTTCATAATGGAAAAATGTTACACGGAGAACTGCTTGAAGT
ACATGTTGGGAACAAGACTATTGTTCTAATGGATGTCTATAAGTTGCATATACATGTGGG
CATCATTTCTACCAAGCAGACAAGTATGCGCAAATTGCAAAGTAAAGTTTCTATCAAATA
CATGTCAGCAAAGCATAATAGCGATTCAGTCCCTTTAGCATATTCCAACGCGTCATGTTT
AAGCAGTAAATAAATACTGGTACATAACATATTATGAATTTCTGAAAAAGGAACTTTTGT
ATGAACCTTTTTGGTTGCTTATGAGTATCAAAAGATCTGAACAAGTTCAGGAGAAACTTA
GTGAGGCCTCTTTCTGTCTGATCATAGAACAGCTTATACAGTAAAACACGGGCTGTTTGA
GATTCCCTTGAATCTTCAGGATGAACTTTTACCACCAAATATATCATGCCAATCTGCAAA
GGAAAATTGTTTGGTGTGTGGATTCGGATAAGTCAAAGATAGAGACCATGAAAACATACT
AAAGGAACACGCTCAGGGAATTATGAAACTAAGCAAGTTCATATTTCTTAAGAAAAAAAA
AATCTCCTTTTCAGACTAGCAATGTTTTGTGATTCTCTTTGTAGACCAAGTTTAACAGAG
TTCTCAGACAACAAATGATAAATAAAAATAACCAATAGATCCTATATGCAGTTTATGAAG
CTTAACAAATTAATATCTGGTTACTAGTTAGGTGCTTGGTAGCTGATACTTGTCATTACC
ACCAACATTCAGGGAGCAGAAGTTGATAAATAAATCATACTACTTGCTGGTAGTGAAATG
GCTTCAAACTTCGCCTAGTTATGGATAAACAGTAAACAAACCACGCTCAAGCCTAGTTTC
AATGTCTACTTTTCTTTTTAATCAAGATCAAAGTTGGCAATGCAAATTTGGTTTTGGCAC
AGCTATCTGAGCAATACTCCAATTTACTTGTTATAAACCTTTTTCAGGAACAGAAACTGA
ACCAAGCTCAACCAAAACAATGGATCAAATTTTCAAAGTTAAGCCTGGCTGATTTTACTC
AGACTTCACTTGCTTAAAGCATTACTATTTTTGTTTGAGAATGTTAATGTCAATGTCAAC
ATAGTGGTATACAAACCGTTCTCAAGCTCATTGGCTAAGAAGAAAAATGGAAGAGATATA
CAAGATCTACGTATAGTGTCCCTGTCTTAAATGTACGGCATACATATTTGCTTACCATGT
TCTTCATTAAGGAGCCAGCAGCTGAAAGAGTTTTGTAATCCTTAGAATGCTTCAGGTCTT
CATAGGCATCACGCCACCTCGACAAGACTACATTGAACATGTCTTCATTTAATGTGGCTG
CAACAGGTCCACATATGTCACCACGAAACGGCAGATCATCACATTCATTGCCTGGTGAAG
TCTCGGACAGCTGGGGCCCAGCACTAGATTTCTGACCAAAAGAATGACACGTCACAAAAC
AGCGTGACAACAAGATGACAATCACATTTCTGCATGAATGGTTATAATCATGGTATTCTG
TCCAATTAAGCTAATGTATTCCCTAAAAAATAGGTAACAGACTAAAAAATCTAACAAAAA
CAAAAGATAACATAACAAAGTTGTATGTATTGCAAAAAGAAATCGCTGGCGTACAACTTA
AATTGCATGCATTGCATTAGTGAAGACAAAACCAACTACATATGAGCAGATATTGGCAAT
TCCGGTCAACATTGCCTAGGTAATAAGAACATGAAACGCCAAGTAGGTATAGGAAAATGC
AGAGCATCACAGCCCATGAGTTCAGTTCCAAACCTGCGCATTTGATGCTTTCTCGTGTTG
AAAAGCTAAGACAAAGCAAACGACTTTGAAGAATGTAATGTTATCAGATGTCTCGATAGA
ATCATGCTGCTTCACGATATCATCACAAACAGACTGCATCAGGACTGAAAAGCACTGTGT
TATCTCAAGCTTATAAAAATATGGGATAGTAATAGTTTGGTAAACAGAGCGGTTAAGTTA
CCATTATATCCTCCAGATAAAAATTGATCCATGAAACTTCTTAGCATTTCCATAATACCC
TCCTTTGGTATGTAAAGAAGTTCATTATCCCATGCTATCCTTTTCTGAGGGCCTCTTTGG
ACATTACGTATTTTCCGGAGGCTATTTGCAGATGACATTGCTGAGCTGGGATTCCCTTTG
CACAATGATTTAGACCCATCCTGTAAGATCATGTACAACACAACGATTTATCCACTTATG
ATGTAGAATCTAAATAACAGCATTAGACTATATGCGCTACCACTGAAAGGCATGTAAAAA
TTCCATTGAGTGCGTGATTCTCCGCGTTTCGCTGCCTGAACATCCTTTTTTCCCTCTCTT
CCTTCTCCATCATCAATCTCAATGAATCAACTGATGTATCAATATCTCCATTGACCTGCT
CCTACGAAACATTGAAAGAGTAACATAGTTCTCATTGTAAGTCACAGGAAAGGGGTCATC
TAGAGAAATAGATTAATTCGTTTTGAAGAACAGGTATAACCTTTGAGACATCTGTACGAA
CTTTGGCGATCAATTCTGGGTCCCGGCCCAAGAAAAGATAATGAAAGATTTCCAACAAAA
GAAGGTTTTCATGCTTGAGATAACCAGAGGGCTCATCAATATGTTGAGCTAGCACTAAGA
TTAGGTCCATCATATTTTCTTTAAACATGAGCTCTAAAAAGCTGTCAGCCAGGTACAATA
ACTGGGTAGCTTCCCCAGATGCCTTCTGAGGCAATGTGATTTCTTGAATGGCCAAGACGT
TGCGGAATAAAGTAAGCACCAGCTGTACTAGCTTCCAGTCATCTTCCGCGAATGAAGTTC
TGATTGCCATTGAAAAGTAATTCATGAACGTTGAACTTACTAGAGCAAAGGAAACATGGT
GTAATTGAACTAGTAAATCAATGTGAACAGGACGGAATGAGAATTGACAGAACATGCATG
CTATTTGCACAACTGGCCTTTATGCAACAAAACAGAAAAGGATAAATATAATATATTTTA
AGGAATAAGTATAGTAGTCTTTTGGGCATTATTTACACTTTAATGGGTACATCAAATACC
TTATGTTTGGTCGCAGTTTTGATAAAAAGAAAGAAAAAAAAACAGGTGCATATTTATTTT
TGTTTCACGAGCATAGTCCAGTGCAGATGAAGATAGTAGCTAGCATCAAATTGACATGCA
GATCAGGCATAATCATCTTGCTCATGTGCCAATGACATTGATAAATTATAACTTACAAAC
ATATTACAGCATGATAAAAGCATGACCTCATCTGATACACAAGTGGAACCGAAAGTAGCA
ACGGAAGTGAATTCACCTTTCCAGATGATCCAATGGGTCCTCAAGAAGAGACACAATCAC
TGCGATTGCAACATTCCGTGTCAGTGCAGCCTTCAAATCCCACAGATACTCTATCTGTTG
AGCAACATCCTCTGACAAAGGATCGACAGGCATGGTAAGGAATACCAGCACTTTCACTTC
AAAAAAAAAGGAAGGAAAACAATAAGCCTTGTAATGTCGCATCAGTTAATCCAATTAAAA
GCACAACATGTAGCTATATAAAGGGTAAGAGACAAATATTACAGTGATAGAACTTGATAC
AAACTCAATTCCAGATGAATTACAAGTAAATAAAACTTTGACCCTTAACATATATTTAGG
TCTTCAGGGTCAAAACATGGCACGAAGGAGCGTGCATTCTTATCAGACTACCATATCCTA
ATCTATAAGACTGAATTACACCCATAACAATTTCTTATAGATTTTACCAAAATGTTATGA
CCGTAAGTAATGATCAAGTTTCTCAAGAGATTAATGCTCAAAGATTTATGGCGGAAGTTT
GCTAAAAAGAATCACCACGGAGATCATTCTAGTGGCTACAACAATGTATATTTGCGAACA
TAGGGAGTAGAGCCTGGGACCTTCCATGCATAACAAAGTTCAAAACCATTGCATATTTGT
CAATGTAGGGAGAGCAGGGATCATGATCTTCAGTCTGGTTAACAAACTCTTCCATGTAAC
CAAGTACTCCTGAAGTTCAAAACTACAGACTGATAACCTCAGATAAGAAAAACTGCCCAC
TGAAAATTAGATAGCGGATACTGTTATTTAGCAAACGGATCCGAACTGACAGCCACTACT
TGTTTTTGTTTAGCAATATATAAGTTGTACAACAGAACTGCACAGATATGCACGATAGGA
GAAATGATGACCTGGTTATGGAATGTGCAAATTCGCTTCCAAGAATCGAGGCAGCAAAAT
GTGGACAGTTTCAGAGGCTCCTCTACCCTCAAAATCAGTTCTTTTAATCTAATCTAATTG
CACTAGAGTTTCAGATCTTGTGTGGGCTCCGTCCGTGCAGAGCATCACGACAATTTCAGA
GTTTCAGGAAGGAGGGGGGATAAAAAGTGTACCTGCCGTGATGACGAGGTTGCGGTCGGA
TTGGTAGTTCTCGATGATGGGCACCAGATCCCTGGACGCGATCTTCCACTTGCAGACCTG
CTTGAAGACCTCCCGCCGCTCCGGGTCGTCCCGCCGCAGCAGCCTCTGCAGATCCTTCAG
GTTGTCTGCAGAAAACAGAAACGCGCGCGCAGCGGAGGTCAGCGAACACCGAACGGCCGG
AGGCGAACGGAAGGGAGGAGGGGCGTACCGAGGCAGTGTTCGCCCTTGACGTAGCCGACG
GCGGCCCCGTCGTCGTCCTCCTCCGCGGCCCCGAGGCCGGCGCAGGTGAGCGAGAGCATC
GCCGAGTCCATGCCGCTCCGCTAGGGCCGGTGCATGGAGGCGGGGTGGGGTGGGGTGGGA
GGTCGCGAGGAGAGGTGGATCCAATTCGTCGAGGCCTCCAATTCGCGAGTAGCATTGATA
CAGGATCAGATCCGGTGGCCTCAAATTCACCGAGGAGTCCCGCGACGGCGCGGCGGCCGA
TGGTGGCGAGTTGGGCGGCGCCATGGGATCGGATGTGGGAGGAAGGGAGGGAGGAAGGGG
CGTGGGTTTGGGGTGGCTGCGGACTCGGGATGAGGGAGGAGTGGGTGGCAGCGGGAGGGG
GGATGGAAAAATGTCCAAAGGACAAACTTAGGTTTTCAGCTAGGTAGGCGAGGCATGTCG
TTGGATCCGGGATCATCCGACAGTCTTTTATGCATGATCCGTGTGACATGCTCATTGAAC
AATCAGAACACGATATGATATTGAGACCATTTAAAGTGCCCAAAGTGGGTTTTTTGTGAA
GGACTTACCAAATGTTTGTTGCAAAATTGGACAAAATAGGAAAATGAATATTGCAGAATT
ATTTTTGAACTATGGANNNNNNNNNNNNNNNNNNNTTGAGGAATATATGATCCAAAGTAT
TT