Contig Data
morexGenes
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Map Locations of contig_328333 (8290 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_328333

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_48709 1 3123 bp MLOC_48709.1 Available Available LOC_Os05g44320.1, FRAME:-1, EVALUE:0.0, 13105.m04682 protein WD domain, G-beta repeat domain containing protein, expressed





CDS Structure of MLOC_48709






Contig Sequence (8290 bp)

>contig_328333 8290 assembly3_WGSMorex_rbca.fasta
CTTGGGCCTCGCCGCGTCGAGCAAGCCGCCGTCGCCCGCGTCTCTAGCCGCAGCGGCGCA
AGCCAATATCCATGGCGCCCGCCTCCCGGTCCTACCGCGCCGAGCAAGCCGTCGTCACCC
GCGCCTCCAGCCGTCGTCGCCCCCGCGCTAGGGTTCGTGTGTGTGAGTTAGGGTTCGTGT
GTGTGAGTCGGGTGGAGACGCGGTGTGGTGTGTGTGGTGTATGTATGTGTGTGAGTTGGC
TTGGTGTTTCACATGTACGTATATGTATGCGTGCACGTATAAGGGATATATATGGCTTGG
TATTGGAGAAAATGGCATGGATAAAAATACGAAAAAGTTGTAGTGGCATATGTCCAAGTT
CAGTTTTTGTAATGGCATATCTCCAACCTGTGAAAATTGAAGTGGCATAGATCCAATTAA
CCCTTAGTCTAATCAACATAGCTAAGTCCATTTCTTTCACTAATCAAGAGGATTCCTTGA
TCTAGCGGTGTTAGAGTAAAGGGATATAGTCCTCTAGAATTTTATATGCAATAATTGATT
TAGGGGGTTTCAACCCATGCACCTACCTTTGGTTTGGAAGGTTAGAGTTCCTCCTAAAAT
TCAATGTTTCCTCTGGTTATTTTCTCGAAACAAGATAATGACCTACAATATTCTGAGAAA
GAGGGGCATTGTTAAACCCTTGTAGTGTATATTCTAAAAGGAAATTAAATAAGTATACCA
TCTGTTTTTGAATGTGTTCTTGTTAAGATAATGTGGTTCTGCTTTAGATTAGTGTTTGAT
GTAGATATCCTTGGTTTTAAATCTTTGACTAAACATTGGTTATGCAAATAAAAAGAATTT
GCATTTAAATGTAGCATCTTGTGTTGTCTTGTGGGGACTATGGAATCGCATGGATGTTAT
TGTTATTAACCAGGGGTCTTGGATATCTATGAAATAGGTTTGGGGTTTGGTGGTCCAATA
TTTGAGGGAGTGGGCAAGACTGGCCCAAGATCTAAAGGGAGGAAAAGTGAGAAGATTCTA
GTAAGTATTACTAACAAAGCTAAAGATGTCACTAAAACTGGAGCCGTACGGACTGCTTAC
ACAAGCTGGTCAGGTTTATCTTCGTGGAAGGTCTTTGCTAATCGGTTTGTACAAGAGATA
ACGTGGAGTTTGAAAAGTAGTTCCACATTAGTAGGGATAAGCTATCCCATGGATTGTAAT
CTTGTTAGCCCCCTTTGATACGCTGCACTTATCTTTCCATTGAGCCAATCCACACCACAT
GTTCCGAGAACAACAAGCTGGGCGAAACCGCTGCAACAAGCAGATGGGTTCCAGCGCCGG
TCACTACCAGAAATGCGACTAAGCGTGTGGGCCAGCACCCGACAGGAAAAGGGGAAAGGC
CGTCAGGAAACTAATTTATGTCGGCTGACCGACAGGAGGAACTTACAGCCATAGTCTGTC
AGGAATAAATCTATATGCCTGACGGTCGGCGCACGGGAATATTATCGCTGACGGTTATCC
CAGTTGACTCAGAGGAAAAAAATGCTCCGTCAGATTTATCCTATCCGGAAAATACTTATT
CCTGTCATCCGCTTGTGAGGAATGACCGTCACGAAAGAATTAGACCTGATGCAATGTGCA
TGCATTCCGGTGGGCCATTGGCCGTCACTGTTGCATCATGTTTTTTTATTTTATATTCCT
GGCAGGAAAGCAACATGCTAACCCAGATTCTACAAATGTTGAATTATTTTCCAGAAACCA
TATAAGAATAGATTTATGTGACAATATCAGACTTCATATATCATCATCAGTTTCATACAT
ATATATCATCAACAAAGTACACTACAAGGCTACAACAGTACCAACCACAAAAGGACCTGC
CAACTACAACAATACTAGCAAAATACACCGACTTGCAACTACGACCACATGTCAGTTCTC
ATAAAATACACCGACTGTCATAAAAAACTGGAGGGTATATACGTTTATAAAAAATGATGT
ATATACTTCTTCAAAAATCAGTGGGGAAAATGCATGTCGATTCCTTTGAAAAAAATATAG
TATGTAGTGCCATAAAAAACTGAAGTACATGGTTCTGTGAAAATCAGTGAGGAAAATGTA
TATTGCTTCCTTTCAAAAGAACATTATATACTCCTTTGAGAAGAAGAAAAAGTATAAGAA
TTACCAAGCAGTATATACTGCTTTAAAATATATTCCTAGATCGGCAAGTAGTATATACTT
TTAAAGAAAAGTAATTATATGTCATGAAATACTAGTAAGTACACCAAGGTTCAAACTGAA
GTAGTATATACTCGTTTGGTTTACTAGCAGGCACTATCTTTTCTTAGAGAACCACGTAGA
CGGCTCTAAAGTTAGCATCGTGTCAACGTTCCTACCTTTATGGGTGTTGTTTTGCATGCA
ACGGAGATTAACTTTTTTTTTAATTTTAATACAGTTAGTTTGTTACAACAGAGTCTTCCA
CGCCTCCACTAAGGATGGGAGTATGTACACCTAGGAGTATAAAACAACAGTCCTATTAAT
ATTATTATAACTTATGTTGTTATCCTTATCTATTCCCTTGTCGGTCTCATCAATCAATAG
GAGAATAAAGCCCCCCCCCCCTCTTCCAATTCTTAGACATGTTTTTCTTGAGGAATTTTC
ACATATCGTTAAACAAATGTCAAATTAGAACACAAATTGCACGGAAACCAATAGAGACAA
TGATAGAGGACTCATGTCTACGAACATTTGTGGGAGAACTCCCCACAAGAAGGAAACAAC
ATTGAAGCTCTCTGAGATTTATGTGACCGTCGTTCTCGCCACTTAACGTCGTCGGAGATT
GAGGTGGAGGTGAAGAAGCACCATTGCCCATGAGGGCTTTTATGAGCCGAGAATGAGGCC
CGCCGCTGACAAGGCCAGTGTCACTGTGGTGCGTCGATCGGGGTTCATCCTTGTGCTCGT
TGAAACCCGAACTCGACACATTGCCGCCGATGTCGTCGAGGCAGAATGTCATAACCGTCA
CTCTCTAGCCTCCAACCTTGTTCTTGGACCTTCGCCTTCCCCCAAAGAAAGATGGTGTTT
CACGAGACATGATCTATCACACACACAACAAAACCCACCAGATCAATCTCACCAAGGGAA
CGATGAAATAAGGCTCCCAAAGATCCCTCGAGTTCACCAACAAGGGCAGCACCGAGATGT
GGCTAGGATCAAAGAAAAAATATTCCAAACAATGGCAGCCTGGGATTCCCCATCCTTTGG
GCCTTGTTTGGTACCTAGGGGTTTTGAGGGGATTGGTGAGGATGATCCTCACAGGGATTG
GGTGAAACCCCAACCTTCATCCAATCCCTTCAAATCCCCATTTATCCCCAATTCACTAGG
TAGCAGTAGTGTATCGGGTACTGAAAAAATGCATTAGAATTTATGAGGAAATGTAGGGAT
AAAACATTTCAAATACAATAGAATCAAATGGTGTTTTGAAATATGTAAGGATTTAGAGGT
TTGACCGGAATAATTTAACCAATTCCATAAAATACACTAATACCAAACAAGGCCATGTTA
CGACCGAAGGGTGAGAAAACCCACGGCCTCAACAGTGGAGCGAGGGAGTTGGTCAGCTCC
CTGGTAATGGTTCGTATCGAGCAAACAAAGTGTCGAGAATAGAGACACATCACATGTCTA
ATCTTAAAACGAGTAGTTGCTCGAATTGTCATACCCCTTCCCTATTATTGTCATTTGCCA
AGCCAAAAAGACAATTATTGCCAAACGCACCGTGGAGGATACAGTCCATTGTCTATTGGT
CATGGTCCTCCTAGCTGGCTTATGGCGAAGGAGGACGAGGAGACCAATCAGTTTTTTTTT
CTTTTGAGGGAGTATCGGAGGCTTCAAAATTAACAGCAAACATCGGTTGTGTGTCCACAA
CTCGGTGTCGAGGTGGAAAATTGATTGGTCCACGACTCGGTGCCGACTGATCAATTTAAG
GAACCAATAAATTTTCAGAATTAAACCACGGGCAGGCATCACTGAGTTTCTATCATCATA
TAATACCTCTGCTCGTTTGTAAAAAGCGTTTGAATGCATTCTTCATAACAAAATTTGGTC
ACACGGACGGACGGGTACAAACACACAACCTCAAGAGAGTAGCTATAACCCACTTCGTGG
TCCAAGAGGCAATCCTTCCTTCCTCGCCAGACAAAAATGCCAACCGTCCTCAGCTCAACT
TCAGCCCTCAACATCAAACATACTGCTTAACCAGCATACAGCCACTGCCCATGTGGATAA
CGATCGCAAGAGTGCACATTCGGCCGGCCAAACACTGGTTGGCATTAAAAAATGATACTC
AGCTGCTCATGTGCTCAGTCATCACCTTGGTGTTATAACAACCACTGCAGGAACACACGG
ATGATCTATGTCAGTTTTGATTTCGCCACCCACTCGTAAAATATGTTTGTGGCAATTACA
AACATAAAGATGAGTGAAATACTCACGAAACAAGTGCCGACCATGGCCTAACTCTTTGTC
CCAGCAGAGCTCAGATATTTGAGCATGTACTCGTTGGAGGAACAAGTGTCCGCCAGATCC
TGGTGTAGTTTTGTTATAGACTTCTGCAACGACTTGAGAGCAGGAAGCAAAGTCCTCGAA
TTTTGCTGGATGTAGCTTCCATCAACCTTGCATAGCTCCTGTAACGGGAATATATAGATC
AGAATAAGATATCCAGTGTTTCACCAAGATCATTAGCTTCAACCCCCAAAAAAAGAAAGA
GGAGAATGGTACCTGAGACCACAGAAGGATGAATTCCAGATGGGGACAGCTTTCCAGGAG
GTCAGCGAATGCATCGATCAATCTCTGAAGATACTTAAAGGGTACTGATGAGCAGATTGC
TCGTACATTGGATGGATCCACAGCAAAGATGCATTGCTTAATCAAGGAGTCTTCGTTTAA
CCGGAGGCTCAGTAAAAGGGCTCTCTGTTGTTGGTTTTCTGCAAGAGCTTCCTCCACTTT
CTGTACAAACACAAAGCACACAAATTTGTCACGGATTGATCAGCAGTATTTTGAGACAAA
AGTTCTCAAAAGGACATGAAGTAAATACCTCAGGAGTAACATCAATGTCAAGATCTGTTG
GGTCGAAGATAAATGATTCATCAACTGAGTACAACAGAACACCATCAGTGGTCGCTGCAG
CAAAAGATCTTCCTGTTGGAGCAAATTTCACACATTTTGTCCGAGCTATGGGTCTTCCAC
GATTTGCCATGGATCCAGGTAAACCATGCCCCAGGCTACCTCTTGTTTGTTGATCAATTC
CATCCTCAACATCGCTATCTTCGTCATCAATTAGATCCAGTGGACCAGCATCAGTCATAT
TCTTTGAGTTCAGGAAATCAAGAACGCCATCCAATGAAAGATTGCGAGTGATCTGGAATC
TTCGCAACAGCACCTGCATAGATGGCATTGGCAAATACATTCAATCATTAATGTGGAGAT
AAGGCGTTCTTACGAAGTTACAGTTATGTCAATCACTGAAGATAATGTCAAAGGCCACCT
AACCATATGCATCTTAGCTGTTATCACGACACGAGGGGCAACATTCAGATGTGGTTAGCT
ATTAATAGTATCTTTTTAGTTTAGGTTCGTGAGGCTACCAGGAAAATAATTCTGGTCACC
AAGTCAAGCAAACATTGGGTACAAACTAATAATAGACAAAGTTTTTACCAAACTACAGTA
ATTGACACGAGTACATGACAGTATGGCATGATAACTATAGATTGTAAAGAATGAGCATAT
ATAAGATGGGAGGCGCCTCTAAGATAGTAAAAGGAAAAGAGATGAGAAATGTGGGTATGC
TACAAAATTGTTTTATCACAAGAGATTTCCTGACCTGTTCTCCAATATCATACATGCATA
TATATTTGCTGTTTCCTCCTGCTAAAATATAGCTTCCATCAGCAGAATAGCACAGCGTCG
TGAAGTACTTTCCTATACTCGTATTAGCTGCAGATCTTCTATCAGTCATGAGCCGCCCGC
CAGAAATATCCCTGCGGCCTTCAATTGTATACATCAACAAGCCATCAAAGGGATCCCAGA
AATTGATTAGGCCATCTAGTGTGCTGCATGCAATCTGCCTTCCGTCAGGACGATAAGCCA
AGGTAAGAACATCATGTGAGTGCTGAAACGTTTCCACAGCACCCTTGCTCTCAAATACAT
CCCAAAGACGAACGGTCTTGTCCCATGATGATGAAGCCAAAATAGCCTACAAAACATAAG
CTAGTTACTCTTTCTGTGGATTTACAAAATACATAGAACCACTAATAGAGCAGATTCAGC
ACAATTTCCTTAGTCAATTTGTTTCAAAAAAAATTGTACTTTTAACTACCAGGAATAGGA
ACCAAAATACAGCAAAGCATGGACTTACACTGATTGGTGAAAACATTAGACCATGAACTG
GTCCTTGGTGGCCACTGAGCACATCCAACAAACGACCAGTCTTCATTGACCAAACATAAA
TCTGCATGAATAACATTGTGGTTATCAAGGAACTAGAATTAGAGCATATAGGCAGCAAAA
GGACTGCCAGAAAAATGTTGAGTGTATACACACACCTCAAATGAATCAAGTGTTCCAGCA
CAAATTACTTCCCCGCTCTGATCTGCCGTTAAAGAAACAAATTGTCTAGGTGAAGGGGTC
GTAAATGTCTTGAAGTTACGATAACGGAACAGATCCCATGCTCGAATAGTCCCATCAAGG
GAGGCACTGAGAAGAGAATGGTTATTGGCCATAAAATGAACTGCAGTAACAGCATTTGTA
TGCTCGGAAAATGTTATGAAACAGAACCCAGAGGCAGCCGTCCAGACCTGCAGCAAGCAA
GTCACGTGTATCAAACTCAATGCAGGATAATGATATACTTAACTGTTAAAACAATATGGT
CTTAGACATAGGAAAAAGTTGTGATAGTTATAATTTCTGGTTTTCAATTCAAAGAGGTAC
TAGAAAAAATATCAATTACTTCATCATCTCAATAGCATTTCATCAAGTATCTTGGCCTAC
TTTAAGAGCACAGCCGGCCAAGCAGAAAAAGGATATAACAGAGATTGCAAATGGCACCAC
TAGTTCCAACATACCTTGACTTTGTTATCATCAGCTCCAGTAGCAATTAACTGAGAATCT
GGTGAGTATGCAATGCAGTTGACATCGAAGTAGTGACCCTGCTGCTTCAAAATGTAGCTC
TCTGACCGCCACTCCCACACCAGCAGTTGGCCAAGTTTGGCGCACCCAAAAACTAACCAA
TTCCCCAAGCTGTTGAAAATAGCTGTGGTGATCTTCTCCCTTGATATTGAGAGCTGGCAG
TGGCACACAAAGTCGGGCATCTGGTACAGCCCAAACACCCCGTTAGAAAACCCAACCACC
ACCATGTCAAGATCCCGGTGGTAATCACAGGCTGTTAGCTTAGCAGGCGCCTGCATGAAG
AAGTTCTTTTTCTGCAGCTCCCACTTTGCCAAATGAAGCGGAGTGGTGCTGGGCTCTTCC
AAGCTCTTCCTCTTCCTGCTGCTCCCAGCATCCAATTCCGGCTCACCATCCTGCTCTGGT
GTCCCGGGTGAAGGTGGAGGAGATGCGGCATCATTGCCCTCCACCAAATTCCATGTAAAG
ATAGCTCCGTCCTTTGAAACCGTGTAGACCCCGTGGACTCTGCCCGACTTCTTATCGGTG
GCGAAGAAGGCGCCAACGACAGCCGCACGGTGGCCGAGGAAGAGGAAGGGCTTGTTACCG
GTGCCCCGCTTGACGGGCAGGAGGCGGGCAGTGAGGTCCTTGCAGGCGACGAGGAGGGAG
GCGGAGTCGGGGGACCAGTCGAAGGAGGTGACCCCGGCGGCGAAGCCGGGGAAGACGCGG
AGGAGGTGGAAGGGGAAGAACTCCCTGCGGAAGGAGGGGGAGCGCCAGATCTGGACGAGC
TTGCCGACGGCGACGGCGATGAGCTGGCCGTCGGGGCTGAAGCGGACGGCGGAGGGGGCG
GCCTTGAAGGAGACGCGGTGGAGGACGGCGCGGCGGCGGAGGTTGGCGTAGAGCGCGCGG
CCCTTGTCGTCGCAGGCGAGGAGGAAGTCGCCCGAGGGGGAGGTGGCGAGGCGGGCGATG
TTGGCGGAGGACTCGAAGGGGAGGGTGAGCGAGGAGGAGGCGGCGAGGTCGGTGGTCGCC
ACGCGGTTCCCCACCGCCGAGAGGAGCACGGAGGAGTCCCCCGCGAAGACGGCGTCGCCG
CCGCGGTACGGCGCGCCTAGAAGGTTCTGGAAGCGGTAGTTCATGGCGGGGGCGGGGGTG
GGCGGGAGTG