morexGenes - Barley RNA-seq Database

Contig contig_321762

Source Contig contig_321762

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_321762 (4989 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_321762

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_48344	3	1383 bp	MLOC_48344.2	Available	Available	LOC_Os01g05080.1, FRAME:+3, EVALUE:1e-91, 13101.m00481 protein thylakoid lumenal protein, putative, expressed

CDS Structure of MLOC_48344

Contig Sequence (4989 bp)

>contig_321762 4989 assembly3_WGSMorex_rbca.fasta
ATGGCCCACTCGTCGAACGATAATGTGTTGCGAGTTGCATTTGCTTTGGTGCCTTTCGAG
CACCAAGACAACTGGGAGTGGTTCATGCGTCATGTGCGGCAGAAGGTGATTTTTGATAGG
AGGTATGCATCATATCTGACCGGCATCATGGCATAGTCAAGGCAATGGACATTGTTATTC
CAGGTTGTCCAAAGCTTCACCACGGATGGTGCAGGAGGCATTTCGTGGCCAACTTTGAGA
TATCTATCCAGAACATCTCGCTGGTATTAAGTTACGAGCCCCGCCCAAAGTGTAAACTCN
AAGCAACGGACAACTGCATTAACAATTATAAGTCAAGTTACAAAGATCACAAAGATCATC
TAGTGATAAAAATATTTGAATCAGAAACAAATAGATGAAAGCACAAAAGAAGGGAAAAGC
TAACTTGGCTACTCGTGAGCTCGGCCTAAGTCAAACATTGTCGAGACAGCCCACCAGGGG
TGTCATCACCTTCCTACTGCTCCTCCCCGACGCAGTGGATGCCGTGCTCACGTCCACTGT
CGTGGATGGCCACGTGTCGTCCATCCGCTTATGCTGGCAGGGTGATAAGGTCACTCCCCC
TCCCTGCAAACCCTAGCTCATTCCCCCTCTCCTTCGCTCTCGCCTTTGCCTCCCGCAGCC
GTCACTATGCCTCTCTCGTAGAAGCTCCCCCGGCCATCGTTCGTCGTCCCAGTGTGTCCA
AGAGCTCGGGCGTGGTCGCCTTCATCGCCAACCCCCCCCGGATTGGAGCCCGGAGGCCAC
CTCGACGACGATCGCTTCTTCTTCCTCTGCCACGATAATCGCGACGCCATCGTTGAAATT
CGCCGCCCTTGCTGCTCCTAGCCACTCACTGAGCCTTCGTGTACCTCCGAGGTGAGCTCC
CTGCCCTTCCCCTCTCTCTGCGCCGGCCCGCTCGCCCCTAGATCACTCCATCGCACCCGC
GAGCTCGTCGCCGCCATTCTAGTCATCGACGAAGCCACAACCGGCAAAAATGACGTCCAA
GCTTTGTAACATTCTCCTAGGGCTGCTAGGAGCCTGACGCACACACCCACTCACCCTCAC
GTGGCACCTACCGCCGCCCGACAAGCTCCGTCTATGGTCGTCGCATCGCCTCAACGTTGG
TGTCCGCTCCGGCCAACTCAGCATGCGCCCTTGCCACGGGTCAACGCGGCTCGCTCCGCC
TGTTTGAACGGGACCGACCGCGTTCGTTTTGGCGGATCGTAGGCAATTCCTTACACTGGC
CCGACCTCCTTCGCCGTTGTCATACTTGTCGGCGCTTCACCGCCAGCGCACCACCATGTC
CGACTCATCGGCAGGTGGCCCCCGGTGTTTAGTCCCATTAAGCCAGCCCCTAACCCTAGT
AACCCACTAACTACTCGAGCCTACCGAGTCATTAAATTGGTTTAACTAATCTACCTAATT
AACTAACCTAACTAGTCATTGCCATGCGGGCCCTAGTGGCTTTCTCAATATTTAGTTAAA
CTAAACCCCTGCTTAATTACAACTTTGTATGAGAGGTGGGTCGCCCTGTGTTTAAATGGA
TAGGCCCGGCCGAGTCAGCCGCCGAGTTAGCGGTTGGGCCCACCAGTCAGCCTCTAGTTA
ACTGGTCTGTTGACCCCGTTAACTGGTCCCACTGTCAGCCCCTTGCTGAACAGTTGGGTA
CAGTTTTCGGCGTGTTTAGCAATTTAGCTATCTTTTTTGAAATTAAATAATTTCAAAAAA
ATAAAATAAAAATTTGAAAAATCATATAAATTAATCTATAAGTGAAATGAAAATAATTTA
TGCATGAAAGTTGCTCAGAAAAATCCAACGAATCCGAATATGTTGTCCATTCATCTGTCA
CATGCCTCTAACATGATGAACATGGACATTTGGTGTTATGATCATCTGTTTGGTAATAGC
CAAAGATCCGAGAAATATTGTCAGATATTTTCCCGCTCCGTCTGTAACGTGTAGGACTGT
GTTAGCTCATCCAGAGCACTACATATTGCCATGTCATACATCGTGTTACATACGAATGTA
TACAGACATACTCTAAAGTGTAGATTCATTCATTTTGTTTCGTATGTAGTCACCTAATGA
AATCTCTTAAAAGACTTATATTTAAGAATGGAGAGAGTAATAATTAAAAACACTTGATCC
ATCGAAATTTATAAGAGAGGAAACAAATGGAAGTAGAGGGAAAATGTCCATCGTGGCAAT
CCTTTGATTGGCCAAGCAAACAGATGAAGATAAGACGGATAAACTCGTCGGCGTTAGCCC
AAAAAAGGATAGACCGCGACAAACAGCCCGCCAGGAAGCTAAGCTCGTCATGGCCATGAC
CATCCTCGGCGCTCTCAAGCTGGCCCCGTCCCCGCCGGCGACGACCACCTCCTCGCTGCC
GGCGTGGCGCGGCCCCTCCTCGCTGCACTTCCACCTCGCCAAAGCTGGCGCCGCCGCGCT
GGTCGCCGCCTCGCTGCTCGTCGCCGACCCGGCCCTCGCGTTCAGGGTTAGTCCTGTTGT
ATCTGTGTACCTGTCGATCGAGTGTGGTGGTGCGGCGATTGAGCCGGCGTTAATGGCGTG
TGGGTGGACGCAGGGAGGCGGGCCGTACGGGCAGCAGGTGACGCGGGGGCAGGACCTCAC
CGGCAAGGACTTCAGCGGCCAGACGCTCATCAAGCAGGACTTCAAGACCGTACCTACTCC
ATTTCACCTCCGACTGACCTTCCTAGCGCGTAGAAATGCAGTACAATTTTTGAGCATCTG
AAATGTCTCTGCTGATTTTTTCTGAATTTGCGTTTCTTGCTGCAGTCCATTCTGCGGCAG
ACCAACTTCAAAGGCGCAAACCTGCTCGGCGCCAGCTTCTTCGACGCGGACCTCACAGGT
AGCCTGCCGATTTACATCTCTTCTTCGTCTCCTCGGTGGTTCCAATCAGCAGACAGGCAG
ACAATAGTTGGTGTGATGCTTGTCTGCTGTCAGGTGTTCAGTTTGTGATAAAATGGGTGA
TGTTTTTGTTTTTGGCTATTTGTTGGTGAATTCAGGCGCTGATCTCTCCGACGCTGATCT
TAGAAACGCGGACTTCTCGCTGGCAAATGTAACAAAGGTAGGTACAATAGCAGATATAGA
CACTAGACAGCAAAGCATATCATGATTGTTCGGGTTCAGAACAAGCAGTAACATAGCTCT
TCTGAATTTTGGCTTCATATCATGTAGTCGGTTCAGTGACCATCACATCTGGTCGTCAGA
GCATCAGACTAGTACTATCCTATTCTGTTTTTCTCTTTATTGAGTTTTAGCATAGTGCCT
TAATTTTGGAATATGGTTTCACAGCAATCTGGTTCCGTTCTGCAGGTAAATTTAACAAAT
GCCAACTTGGAAGGGGCACTTGTGACCGGGAACACTTCTTTCAAAGGTTCCAACATATAC
GGGGCAGGCAAGTCCTAAGTGCTAACTGCTTATCTCCATGAAGATAGTTGAACTTACTGT
CATAGTGGCATAGTGAAATCATCTTACTGTACTGTGGCATCACCATGTCATGTTTTCAAC
TGTTTTCCCTCTCCAGATTTCACTGATGTTCCACTTCGAGACGATCAACGGGACTACCTC
TGCAAAATTGCTGACGGGTGAGAAGAACACCAATGTCAATATGCAGGAACTTGTCATCCA
TTTTTTCTGAATCTGTTTGATGACATGGTTCTTAGCGATTTTGCAATTTTTGTGCGCCAG
GGTAAATACAACTACCGGAAATGCCACCAAAGAGACTCTTTTCTGCAAATAAAGAACAAG
AATGAAAGAGAATGGAGAGACTAGAGAGTTCAGAGGCTGATTTAGTTCTTGAATAGCACT
GCCAAAATTTTCTTTAACTTCCTTGTCCCCCAGGGTGCAGAGAGTTCATTCCAGTTTCTA
TAATGTGAAATGGTTGCTATAGGAAATCAGTGGGTGGTATCAGCATGTCAGGTGTGTTTG
GTTGAAGGGAAGAAATTATTAGTACATAAAATACATGTTTGTCTGGTAATATTGATACAT
GGAAATGCCATTCATCTCAGTTTTCCAATGTGCACTAGCTGGGCTGACTCAAAGACACAC
AGAGGGTTTGGGTTGTAAATCTGGGACCTTACACACATTCTATGTGATAAGCGTCAATTG
TACAACAACTTATTCAGGTAGCTAATACTACCGAAACAACAGAACTACTTCTGAGATATG
CATCCTTGATTCCATGTAGCTTGGCAGCCACCTCCTGCATGTTGATGCGTTCGCTCGGGG
ATGTCTTAGTGCAGCAAAGGCCAACATTTAGCACAGATATCAGACAATGTGCATGTTTTT
CCTTGAAGGCTATTGGAGTTTCATCCAACTCATTTAGCAGCTGTGGGTCGACAATCTCCA
ATACCCTATCAGGGAAGCTGCCCTCTGTAAACTTCACAATGCTTAGTCCGTCAGTAAACA
TGTCATCAGTTGGCCTTATCCGAATGAATATCTCGAGGAGAACAACACCAAAGCTGTAAA
CATCCGCGGCGGTTGAAACTTGACCACCCCCTGCATATTCTACAGATCAATGGATAAAAA
GACAAGTTCATTTCGCTTTTGCTGCTTAACATATAGATGCTGAAAAAAAATGTAGCAACA
CCGACTTAAAAATATTATTACCTGGAGCAGCATATCCAATCGTTCCCACTACTGAAAGTG
AAGAAGAGTCATTGTTTCCAAGAGATGACGTTGTGGAAGCAACTTTGAATCTTGCCAGGC
CAAAGTCTCCAACATGAGCCGTCATATTTAAATCCAAAAGAATGTTGCTAGGCTTGAGAT
CACAATGAACAATAGTTCCTTCGTTGTTAAATCTTTTATTTCAGCATAATAATTTGGATT
GAGCGCCATAATAATTTAGCCATAGGGCAGTCCAGAAAGAGGTGTTTAATCGTCTCATGC
GTCTGACAGAAGCTACATCTTTTATTTCCTTTCCAGTGTCTTTTAGCCAAGTTATCCTTA
GTTAAAACA