morexGenes - Barley RNA-seq Database

Contig contig_313403

Source Contig contig_313403

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_313403 (1646 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location

Predicted Genes from contig_313403

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_47858	1	140 bp	None	Available	Available	None
MLOC_47859	1	1318 bp	MLOC_47859.1	Available	Available	LOC_Os05g45720.3, FRAME:+2, EVALUE:3e-15, 13105.m04857 protein starch synthase, putative, expressed

CDS Structure of MLOC_47858

CDS Structure of MLOC_47859

Contig Sequence (1646 bp)

>contig_313403 1646 assembly3_WGSMorex_rbca.fasta
AAACAAATAAGAGAGGAGAGGAGGGGAGAAAAGGTCTCAGGTCCTCGGTGCAAAAGGGTT
TAGCGGTGGCTCTCACGCACGCACTCTCATCACGCCAACAAACGACGTCAAACTCATAAA
GCACTAACGCCTAACAACAAGGAGTGACAAGCAACACCGACAAATAACACAGTTGACGTG
ATGTCATGCATGATGCGATGACGCAAACTACATGACGATGCAACAATCGAAAAAAAAAGA
ACCACACGACATAAACGGAAAGAAAGGGGGATCTTCTGNNNCGTCGGTCTCGGGCTGTCA
CAAATAGTCTGTCAGCTATCTGGTTCTATTGTTTGTCATTATATTTGATCGTGGCATGGC
CCATGTAGTCTGAAGTGAATTACAGCAGTTTCGTTTTTCGATTGTTTTCTTGAGTTAGCT
AATATCATTTTCTGATCCCCTGCTGTGTGTATTCAGCTCCTTTCATTTGTCTTGGAAACT
TGATATTGAATGTTAGCTAAATAACTGATTTTTTTCACAAGCAGGTTGGTTGCATTACAA
GGCTAGTTGCTCAGAAGGGTGTACATCTTATCAGGAATGCAATATACAAAACAGCTGAAT
TAGGAGGACAACTTGTCCTTCTGGGTTCAAGTCCAGTACCTGAAATTCAAGTGTGTTTAT
GCCATAGTATATCTGTGTGCAGATATTTTGATCAGACATGAATCTCCAAAGTAACAGAAG
AAAAAGACACTTCACTACCTCATGAATAGTTTATTTATCACCAAAGGAACATGAGTCTGA
AATAGTGTATTTTTGTCTGTATTTTCTATAAAGAACCTCTTTGCCTATATCTGGAACAGT
AAACATATTTGCCTTTTGTTTTGTTTCACAGAGGGAGTGCACTGAAGATCCATAAAAGTA
CCGAATTATCCTGGTTATAAGTTACCAATTCTTATTCACATGAACCACTGTTTTAACTCC
TAATCAAGAAATTTCAGGATACCATGTTACTTTAGGTTTTTAATGACACACATTGTCTTC
TAATACAGTTTCACTCCGAATGATCAACATATTGTCTTCTAATACAGTTTCACTCTGAAT
GATCAACATTTTTTATGCATGACAGTGTTACATGTCTGTTTTCATTCAGACTTTCGAGGT
ATCTAGGATATAGAGTCGATTTGATATTTTGATCCAATTAGCCAGCTGAGGGATCTAAGC
TGACAAAGTATGTGTTCCAGATCTGATGATAGAGTTTATCCAGTGAACAAAATGCTTTCA
TAACAGGATACAGCACTGATCCTAACAGCAAACGAGGGGCTGACTTCACCTAGCAGCTAG
ATAGTATTAAACCGAGTCAGTTCAGAGATGATCAGGGAAATGATGTGGCAGGAGATGCTT
CACTACCATCCTGAAGCATGTGACGAACATATTGCAGGCAGTAAACATGTGACGAACATA
CCCGGCAGGCTCACGGTTGGTGTGATACATACCTCTCGTGTAGCCGAAGCAGGTGGCATT
GGAGTGCTCCGCGGATGATCTTCTACCTCCGGCGAAGTCGACGCTTCTTTCTCCGACGAA
CTCGGAACCGACCTTGGATGTATTTACCCGATAGAGATAGTTTCGTGGCAATGGCAAATT
ACCTGATGCAGATTTCAGCCGAGGTG