morexGenes - Barley RNA-seq Database

Contig contig_310015
Source Contig contig_310015
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_310015 (5393 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location
Predicted Genes from contig_310015

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_47662	1	1592 bp	AK373847	Available	Available	None
CDS Structure of MLOC_47662

Contig Sequence (5393 bp)

>contig_310015 5393 assembly3_WGSMorex_rbca.fasta
GTGCCCCTGACCCGGGATGTGGCTCGATCGAGGCCTCCGGCTTTAGATGGTAGGCTTAGG
TGAGAGGTCTGGGTATTTGGCTCAGCTTGCACCCCTTCATCATATGGATAGAAGTAGCGG
GAAATGTCGCCAAGATGACGGATTTAGACATATTGTTGTACTACTTTGTAAAGTCCTCGA
AAATAATCGATAAAATGGTCGCATGTATCTCCTAGATGCAGAGACCGGGGGTCATCCTCC
TTTTTTTTTTAAAAAAAAAAAAAAAACTTGCCCCCTATGCTGCATGCTCGCTCCGTCGAG
GCGGTTCTGGTTGAGGTTCATGTCGCTCTTGGGATCGGCGTCATTTGCGATGCGAGATCG
GGAATACCTAGGCTAGATTGTTTTCCTTGCAAACCATGATCCAGGGTGACTAGTAGTACG
ATATATGATGATGATGATGATGGCCGAAAAAGGAGGAGATGGATCGGGACTACGAGCCCG
CTTCAGATACGCTACGCTACCGTCCGTGATGCGTTTCAGTGCAAAACAAAAATGATTCCT
CACTTCCTCAGTGTGGCTCAACATACTTAAACGGTAAGATTCCTATATGTATACCGCTCA
AGTTGTGCCTCAATATCCGCTCAAGTTGTCACAGATCAAAATAACCAATGAGAAGTGCCA
AGATACCCTTGTTCAGCTGCGGCACAAGAGATTATATTTGTCCTAGAAATAGATGTACCT
AGACTTATTTTACTTATAGATACATCCATTTTATACATTTTTAAGACAAATATTTTGGAC
GGAGAGAGTATTTGGAAAAGCACAAATCACCGCAACCGTGACACAAGAAACGTCCGCCAC
GCCGAGGATGAAAGGAGCGTGCACCGATGCCGGTCCATGAGACCAAGAGGCAAGCATCTG
TTTCTTGTGAGATTGTTCCTTCATCGGTAAACTCACATATGTAGAAACACGTATTTGGAA
AAGCACAAATCACCTTACACGTCATTGATAAACTCACATACGTAGAAACACGTATTTGAA
AAAGCACAAATCACCTTACACGCATCCATGATGAACAAGCTCACCAACTGTCACACTTGA
TAAACTTATCACCAGTTCAAGCTACTAGTACAACTTAAGAGAAGATGGTTCCCGCAATCC
ACAAACAATTTAATGACTCTGACAAGTTTAACAGTGCCAAATATGCAGCTCACAGATTCC
AGCGAGTTACTAACGCGATGTAAGGCGAACGATAATGAACTCTACTTTGATACGGAACCC
TCGCCATCTTGCGGCGTGGGGTGAACATCTGAGTTGTTGCTGCTGTCGCCTTTCACAGAC
AGTGAATCATCTGCTGCCAGTCTCTTTGAACACGGTTCAGCAGAAATAGGCTTGATATTA
GCTCGCTTGATGCCTCTGCCTACAACACCAAGGTCAGTAACAGTACCTCCAGTGCTTCCC
GATGTTGCTGCTGTAGACATTGTTGGGGAGTCAAAGCCATTGTTTACTCCAGCCATTTGT
GAAGAAGTCAAAGATGCAGCTCTTGGTGGCACGGCATTGCCATCCTTCTCCATAAACGCT
ACTTTTGCAGCAATGATGTTCATAAGCTGGCTCACTGGGGTTTCCATTGCTTGCTCCAGG
TCTTCAAGCTTAACAAAAACAGTTCAGAGATCTCATTGCTCATTATGATAAACATAAACA
TTTTCACTCGTACATCAATAGGCTCAAGACGAACATCAAGTTGATAAGGTGCAGGATCTA
GATTAGTTACCTTCTTCTCAAGGTCAGGCAATATACCAGTAACAAGCTCCATCTCATCTT
CTACAGATGATTTCTTTGAGTCTCCATCAGCAGTAGATGCTTTATCAGCCAACAAGGTTT
CCTTCGCATTTTTCAGGCTCTCTAAACGTGACTTGCACAATGAAACAGCCTTTGCACAAT
ATGGGATCGCCTCTCCAATCTTAGATGCCAACTCATAGACCAAACAGATGCGGAAGTTTC
TAGCATTGATTAAGGAAATTAGCAAAGAAAGAACAACAGTCCACAAGATAACGGTACTCC
CTCCGTTCCTAAATATNNNNNNNATTAGTTTTTTAAAAAGTCAAACCTTGTCTACGTTTG
ACCAACTTTATATCAAAATATATGATGATCTACAATACTAGATATATAAAATATGAAAAT
ATATTTCATGATAAATCTAGTGATAATGATTTGATATTCTAGACCTTGATATTTTTGTTT
ACAAACCTGGTCAAAGTTAGAGAAGTTTGACCTTTTTAAAAAATAATACACCTTATATTT
AGGAATAGATGGAGTATTACATACGCCCTCCGTTCCTAAATATAAGCCTTTTCAGATATT
CCAATATGTACTACATACGGAGCAAAATGAGTGNNNNNNNACTCTAAAATACGTCTATAT
ACATCTGTGTATTGATAACCACATCAGACTTGCATGTGCATTTGTGTAGGTGAAGGTACC
CGTGAGATGTTCGAATCAGTAGGATCAATTACTTACATCATGCATGGATATGAAAATATT
AAGGATAACTTCAGCCACATAAATCTTCAGATAATAAAATATGCACCACTAAAACCAAAT
ATGCCACTTCATCATACTACTACATGGCAGACAATGACATTATTATTAGCACAAGGAGGA
TACAGTTCAACAATTCGACGATGGTCAGGCTCCACCAAATGCTCCAAGATGGCCAAAGCT
TTGAAGTAGTCACCAAGTGAGTTGTCTATGTCCTCTGCAAACAAATGTAGGGACATGAGT
ATCAAGACCACACACTCGTTTATTGCACGAGTAACTAAGATAACAGGGATTACCTCTTTC
CATGGAGACTTCAGCTAGAGCACAAAAGATTTTCACTTTCTCCAAAGTGTTTTCTGGGTT
CTTCTCCACTATACCCCTTGCAATATCTAACATTTGCCAGGCTAGATCCAAATCAGAATC
ATCTTCTTCACCTCCCATCTCATCACCATCCTTGTCACTGTCGCCATCTACATCCTCCTG
ATCTTTCTCATTTGAGTTTTGACCTAATTAATGACTATGTCAGTGTTTACCACGGTAGGA
AGAAGAGCAAGCAGCAATATAGCTAAAGTAAGTAATGAGATACATATAACTTATCAGCAT
AACATGATCACTTTTTATCAATATATATAATCATGAGCAAATAACTAGAGTTCTCATGGA
AATGTGAGACAGTTATTCACATTCTGCAACACTTACATAGCACATAACTGCAAAAGTAGG
GAACTTGCATGAACCATGAGATAAGCACGGAGGTCACCCCCGTTCAAACATGGAACCGCA
AAAGATCAAGGACTAAGGAGTAAGGGCTGAAGGCAGCTTACAAAGCATAAAACCAAGGTC
ATGCAAGTGCACTATTTAGACAGCTAGCTGCGACACATTCAAAGTTTCATGCACCCATAT
CTGTTTAATTTTGTGTTGTCATCCATGTGTATGGACAACAATGGCAGACATAAATATTAA
AAGCAGGAAGGAAAATATCCGACAAAAGAAGAAGGCAGGCAGACAACCACACAACATATT
GTTGATCCATAACAAGCTTTTGAATGAGCAATCAAAGCACATATTTTTACTGCCTTCGAA
ATCATCTGCTATCTATAGCATAATTGTTTTAGACGTTTAACCAATTAACATAATCACTTT
CATGAAGTGGATGAGAAGTTGAGAACTCAAGAAACAACTATGAACACTACATAGCTCCTA
ATAAGACCCAGCATTTTGCAGCACAGGAGCTCATTACTGATTAATATTTTATTGTGTATA
GCCATCAGTTGGTAGGAAGAGAGGAATATAAATAAGTCTTAAATCATAATGACCATAATG
TTATTAATATAATAATATGTCCAGATTAATGTCTGTCTTCTGGTGTATAACTGCATCTGA
AACTATTTGGGCAAAGGAATAACAACACACCTTCAAGACCACCATTGTCTGAAGATGGAT
CATCACCTTTGACATTGCTACTGGATGCCTTTGAGTTTCCACTATCCTTACTGGCTGTGC
TCTTCGATGGTTCTTCATCTGGTGCACTCTTGGGAACATTACCCAAAGGATCGGTCTCCT
CCTGTGATTTGTATAGCAAGGCACATCCATATTTGTAATACGTGCTGGCACACTCTGAAG
CAAGTTCTCCATAACGTTCAACCCTGGCGAGAACAAAGCCGTACATTTTCAGTGTATCAT
TGTAAAGGTATTAAGGGTACAACATAAGAACATGGAAGGTAACGTAATCTGAGATGAAGC
AAGCCAAACAGAGTTAACCAGCACAAAGGTTCCATCAACCATTTTGATGACAGAGAATGC
TAATTATGCTTCCTCTTGGTTGCCGTTTAGAAAAAGTTAACTACTGATTGGCGCTTGCAC
AGCCTATTTAGTAAGTACAATGCTGAAGTAGGATGAATAAACTAGATAGCAGTAAAATAT
CCGTAACTAACCATTACTTAAGAGGCATGTACACATTTCTGAAAAAGGATCGCGCCTATG
CCTCACGTAATTACACTTAGATTTAATGCTCATCCTAGTACACACATCAAGCACCAATTG
CCAACGTAACCTCACAGTTAAGGGGCCTCGTGCCAAAGCAAAAAGAAAAAGAAAAAAAAA
GGGGGGGAAACCACATATAAAGCACTGCAAGTACAAGCTGAATCTACAGAACACATATAA
TCAGTTTCCAGTAGGTGAATATTGTCGCAAGGTGCTAATTATGAGCTATGTTGATTGTTT
ACAAATGACTAATAGTGCCAGTCAGAAGCACTAGCTGTACTAGAGAGCCATATAGACATT
CCTATGGAATATGGATAATACCTAGTCCCGAATTTGTTGCCCTTTCATTTTATATAGTTA
TCACAACTCACACATGGCACATCACAACAAAATGGGAAAATCCATATAATTGCTGCCAAA
TAAGAGTAGGCTCATTGGACCGAATAATCATCCCTCGCATCCTACCACATCCCATTGCGC
TGCCTGCTGAACACAATAAACGTAAATACCACAACTGGTGATCACCTTCCTGTAGAATCT
CTTAAACCATGGTAAACCCATCCAGCAAACTACATAAACCAAAAGCTCGACGGACCTACC
GCCGACGTAACTAACCCAGAAGAGAAATGGACTAAACGGATATTAAGCACACGATACATC
CGTAGGGGAATTTTCGCCGGGCTATGAGTAGGATCGGTGGGCGGGAGGAACCCTAACCTG
ATCTCGAGGGCGCGGCTGAGGCAGTCGACGGCTTCGACGAAGTCCCCCTCCTCGATGGCC
TTGGATCCCTTGTCAAACAGCTCCTCCGCCCGCTCTAGGGTTTTCTCCTCCTCCCCCTCT
TTCTTCTCGCCGCCCGCCTCCTCCTCGCTAGGGTTCGGGGGTGGCGGGTCCTG